| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5280943 = | 35 (1.050) | 6 (0.220) | 6/222 | 2.7 | 21.6% | intergenic (+28/+110) | trmA/pcaG | tRNA/tmRNA (uridine(54)‑C5)‑methyltransferase TrmA/protocatechuate 3,4‑dioxygenase subunit alpha |
| ? | NC_002947 | 5281029 = | 15 (0.550) | intergenic (+114/+24) | trmA/pcaG | tRNA/tmRNA (uridine(54)‑C5)‑methyltransferase TrmA/protocatechuate 3,4‑dioxygenase subunit alpha | |||||
AACGCTGGCAGCGAACATTGCCCAGTTGCAGGACACCCACCGCATCGAGCGCTGTGCATTGTTTGACCAGTTCCCG‑TATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCT > NC_002947/5280795‑5281087 | aaCGCTGGCAGCGAACATTGCCCAGTTGCAGGACACCCACCGCATCGAGCGCTGTGCATTGTTTGACCAGTTCCCG‑TATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGc < 1:446865/150‑1 (MQ=255) gCTGGCAGCGAACATTGCCCAGTTGCAGGACACCCACCGCATCGAGCGCTGTGCATTGTTTGACCAGTTCCCG‑TATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCa > 1:339762/1‑150 (MQ=255) gcagccgcagcggcgtgaaaccttgattgccaagcgttgcgaagtggatgggaagacggcgtaccgctttgatatccgcattcagggggaaggggagaccgtcttcttcgacttctgaggtgaagcttggggctgctttgcaGCCCATTc < 2:391228‑M1/8‑1 (MQ=255) gccgcagcggcgtgaaaccttgattgccacgcgtcgcgcagaagataggaatacttcgtaccgctttgatatccgcattcagggggaaggggagaccgtcttcttcgacttctgaggtgaagcttggggccgctctgcgGCCCATTcgcg > 1:779941‑M1/140‑150 (MQ=255) gccgcagcggcgtgaaaccttgattgccaagcgttgcgaagtggatgggaagacggcgtaccgctttgatatccgcattcagggggaaggggagcatgtcttcttcgacttctgaggtgaagcttggggccgctctgcgGCCCATTcgcg > 1:58112‑M1/140‑150 (MQ=255) gAACATTGCCCAGTTGCAGGACACCCACCGCATCGAGCGCTGTGCATTGTTTGACCAGTTCCCG‑TATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGc < 2:339762/150‑1 (MQ=255) cagcggcgtgaaaccttgattgccaagcgttgcgaagtggatgggaagacggcgtaccgctttgatatccgcattcagggggaaggggagaccgtcttcttcgacttctgaggtgaagcttggggccgctctgcgGCCCATTCGCGGGCa < 2:589301‑M1/15‑1 (MQ=255) cggcgtgaaaccttgattgccaagcgttgcgaagtggatgggaagacggcgtaccgctttgatatccgcattcagggggaaggggagaccgtcttcttcgacttctgaggtgaagcttggggccgctctgcgGCCCATTCGCGGGCAAGc > 1:40635‑M1/133‑150 (MQ=255) tGCCCAGTTGCAGGACACCCACCGCATCGAGCGCTGTGCATTGTTTGACCAGTTCCCG‑TATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGccc < 2:372260/150‑1 (MQ=255) ccAGTTGCAGGACACCCACCGCATCGAGCGCTGTGCATTGTTTGACCAGTTCCCG‑TATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGAAGCCCATTCGCGGGCAAGACCACt > 2:373783/1‑150 (MQ=255) aaaccttgattgccaagcgttgcgaagtggatgggaagacggcgtaccgctttgatatccgcattcagggggaaggggagaccgtcttcttcgacttctgaggtgaagcttggggctgctttgcaGCCCATTCGCGGGCAAGCCCGCTcc > 1:391228‑M1/126‑150 (MQ=255) cAGGACACCCACCGCATCGAGCGCTGTGCATTGTTTGACCAGTTCCCG‑TATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACAt > 1:332007/1‑150 (MQ=255) acacCCACCGCATCGAGCGCTGTGCATTGTTTGACCAGTTCCCG‑TATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGAt < 1:788588/150‑1 (MQ=255) accGCATCGAGCGCTGTGCATTGTTTGACCAGTTCCCG‑TATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGGCAGCCCGCTCCGACATTGATCGGCGt > 1:248846/1‑150 (MQ=255) aTCGAGCGCTGTGCATTGTATGACCAGTTCCCG‑TATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGgtg > 2:172276/1‑150 (MQ=255) tgtgCATTGTTTGACCAGTTCCCGCTAT‑CCCATCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCAACATTGATCGGCGTCGGTGTACGCAGAt < 1:404885/150‑1 (MQ=39) tgtgCATTGTTTGACCAGTTCCCG‑TATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGAt > 2:141659/1‑150 (MQ=255) tgtgCATTGTTTGACCAGTTCCCG‑TATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGAt < 2:527736/150‑1 (MQ=255) cATTGTTTGACCAGTTCCCG‑TATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGtt < 1:373783/150‑1 (MQ=255) aTTGTTTGACCAGTTCCCG‑TATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTg < 1:141659/150‑1 (MQ=255) cAGTTCCCG‑TATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCggg < 2:332007/150‑1 (MQ=255) ctttgatatccgcattcagggggaaggggagaccgtcttcttccacgcctgaggtgaagcttggggccgctctgcgGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGc > 1:87966‑M1/77‑150 (MQ=255) cG‑TATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGccc < 1:554307/150‑1 (MQ=255) ttgatatccgcattcagggggaaggggagaccgtcttcttcgacttctgaggtgaagcttggggccgctctgcgGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGccc > 1:413707‑M1/75‑150 (MQ=255) cccACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGGGTCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAAt < 1:8275/150‑1 (MQ=255) ccaccaTATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGc > 1:638065/1‑133 (MQ=255) ccaccaTATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGc < 2:638065/133‑1 (MQ=255) atatGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAATGGGCCg > 2:37361/1‑150 (MQ=255) gagaGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAATGGGCCGCagag > 1:23232/1‑150 (MQ=255) gTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAACCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCaa > 2:135045/1‑150 (MQ=255) cgtcttcttcgacttctgaggtgaagcttggggccgctctgcgGCCCATTCGCGGGCAAGCCCGCTCCGACATTGAt < 1:29494‑M1/34‑1 (MQ=255) cgtcttcttcgacttctgaggtgaagcttggggccgctctgcgGCCCATTCGCGGGCAAGCCCGCTCCGACATTGAt > 2:29494‑M1/44‑77 (MQ=255) tgGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCAc > 2:22544/1‑150 (MQ=255) ttcgacttctgaggtgaagcttggggccgctctgcgGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCgg > 1:6664‑M1/37‑104 (MQ=255) ttcgacttctgaggtgaagcttggggccgctctgcgGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCgg < 2:6664‑M1/68‑1 (MQ=255) gcTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAATg < 1:546308/115‑1 (MQ=255) gcTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAATg > 2:546308/1‑115 (MQ=255) tGATCGTTGCATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCg > 2:547406/1‑150 (MQ=255) aTCGTTGTAACGCGGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCAGACATTGATCGGCGTCGGTGTCGGCAGGTCGTTGTAGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCgaa < 1:725313/150‑1 (MQ=38) ttGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGtt < 1:488249/77‑1 (MQ=255) ttGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGtt > 2:488249/1‑77 (MQ=255) gggCTGCTTTGCAGCCCATTCGCGGCCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCATAAGTCGAAGAAGACGGTCTcccc < 1:172276/150‑1 (MQ=255) ggCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCt > 1:442621/1‑150 (MQ=255) tgctTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAg > 2:37726/1‑74 (MQ=255) tgctTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAg < 1:37726/74‑1 (MQ=255) gctTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTccc < 1:22544/150‑1 (MQ=255) ttGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAAGGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCt < 2:68045/150‑1 (MQ=255) | AACGCTGGCAGCGAACATTGCCCAGTTGCAGGACACCCACCGCATCGAGCGCTGTGCATTGTTTGACCAGTTCCCG‑TATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCT > NC_002947/5280795‑5281087 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |