New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5724339	28 (0.850)	7 (0.260)	7/218	2.3	20.0%	intergenic (‑185/+109)	PP_5024/opgH	amino acid ABC transporter substrate‑binding protein/glucans biosynthesis glucosyltransferase H
	?	NC_002947	= 5724358	33 (1.230)					intergenic (‑204/+90)	PP_5024/opgH	amino acid ABC transporter substrate‑binding protein/glucans biosynthesis glucosyltransferase H

GCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAGGGTGCAACGGCAACAGCGGC  >  NC_002947/5724213‑5724505                                                                                                                                                  |                                                                                                                                                    gCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGTCGGCCCGTGGACCTAGAGCCGCAGGGGGACCTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCCCCTACACGGGCATGTGTATCCCTAgtac                                                                                                                                                 <  2:124173‑M2/150‑5 (MQ=255)     aaGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCTGgtaggagc                                                                                                                                             >  2:461449‑M2/1‑142 (MQ=255)          tcgtATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAAGCGGGACCGACAAGGGCATGTGTATCCCTGgtaggagcgggtt                                                                                                                                        <  1:657554‑M2/150‑14 (MQ=255)                                         gcCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCg                                                                                                         >  2:762327/1‑150 (MQ=255)                                                gACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGc                                                                                                                         <  2:752171/127‑1 (MQ=255)                                                gACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGc                                                                                                                         >  1:752171/1‑127 (MQ=255)                                                         ccGCAGGGGGACTTTGTTGGCCAAAATGAGAGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCCCCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCg                                                                                         <  1:124173/150‑1 (MQ=255)                                                             aGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCTGGTATGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAg                                                                                                      >  2:366720/1‑133 (MQ=255)                                                             aGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCTGGTATGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAg                                                                                                      <  1:366720/133‑1 (MQ=255)                                                                gggACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCTGgtaggagc                                                                                                                                             >  1:752750‑M2/1‑83 (MQ=255)                                                                gggACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCTGgtaggagc                                                                                                                                             <  2:752750‑M2/91‑9 (MQ=255)                                                                gggACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCTGgtagga                                                                                                                                               >  2:790194‑M2/1‑83 (MQ=255)                                                                gggACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCTGgtagga                                                                                                                                               <  1:790194‑M2/89‑7 (MQ=255)                                                                            gCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGa                                                                      >  1:268573/1‑150 (MQ=255)                                                                              cAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAAc                                                                    >  2:810326/1‑150 (MQ=255)                                                                              cAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAAc                                                                    >  2:570264/1‑150 (MQ=255)                                                                               aaaaTGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACa                                                                   <  1:53282/150‑1 (MQ=255)                                                                               aaaaTGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCTGGTAGGAGCGGGTCCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACa                                                                   <  1:762327/150‑1 (MQ=255)                                                                               aaaaTGAGGGGGTTAGGACAAAAAGAATCGCGGGTGCACCCGCTCCTACAAGGGCATGTGTATCGCTGGTAGGAGCGTTTTCTCCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACa                                                                   <  2:657554/150‑1 (MQ=255)                                                                                aaaTGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGaa                                                                               >  1:66033/1‑137 (MQ=255)                                                                                aaaTGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGaa                                                                               <  2:66033/137‑1 (MQ=255)                                                                                      gggggTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGa                                                            <  1:266807/150‑1 (MQ=255)                                                                                       ggggTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCAGAt                                                           >  1:180073/1‑150 (MQ=255)                                                                                              ggCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAgcgc                                                    <  1:810326/150‑1 (MQ=255)                                                                                                    aaaGCGTCGCGGGTAAAGCCGCTGCTACAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCcgacga                                              <  2:268573/150‑1 (MQ=255)                                                                                                                gTGAACCCGCTCCTACAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCACGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGc                                  >  2:641161/1‑150 (MQ=255)                                                                                                                 tGAACCCGCTCCTACAAGGGCATGTGTATCCCTGgtaggagcgggttcacccgcgaagctttttggcctaaccccctcattttggccaacaaagtccccctgcggctctaggtcc                                                                    <  1:689925‑M2/115‑82 (MQ=255)                                                                                                                 tGAACCCGCTCCTACAAGGGCATGTGTATCCCTGgtaggagcgggttcacccgcgaagctttttggcctaaccccctcattttggccaacaaagtccccctgcggctctaggtcc                                                                    >  2:689925‑M2/1‑34 (MQ=255)                                                                                                                    aCCCGCTCCTACAAGGGCATGTGTATCCCTGgtaggagcgggttcacccgcgaagctttttggcctaaccccctcattttactcaacaaagtccccctgcggctctaggtccacgggccgccatgcgttagcatccctctccgatacgac                              <  1:50784‑M2/150‑120 (MQ=255)                                                                                                                     cccGCTCCTACAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCg                             >  1:328735/1‑150 (MQ=255)                                                                                                                      ccGCTCCTACAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGt                            >  1:577081/1‑150 (MQ=255)                                                                                                                          tCCTACAAGGGCATGTGTATCCCTGgtaggagcgggttcacccgcgaagctttttggcctaaccccctcattttggccaacaaagtcccc                                                                                    <  2:245065‑M2/90‑66 (MQ=255)                                                                                                                          tCCTACAAGGGCATGTGTATCCCTGgtaggagcgggttcacccgcgaagctttttggcctaaccccctcattttggccaacaaagtcccc                                                                                    >  1:245065‑M2/1‑25 (MQ=255)                                                                                                                            cTACAAGGGCATGTGTATCCCTGgtaggagcgggttcacccgcgaagctttttggc                                                                                                                    >  2:747975‑M2/1‑23 (MQ=255)                                                                                                                            cTACAAGGGCATGTGTATCCCTGgtaggagcgggttcacccgcgaagctttttggc                                                                                                                    <  1:747975‑M2/56‑34 (MQ=255)                                                                                                                            cTACAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGa                                                            >  2:204975/1‑112 (MQ=255)                                                                                                                            cTACAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGa                                                            <  1:204975/112‑1 (MQ=255)                                                                                                                             tACAAGGGCATGTGTATTCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACATACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAgg                     <  1:61643/150‑1 (MQ=255)                                                                                                                                aaGGGCATGTGTATCCCTGGGAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAGGGTg                  <  1:570264/150‑1 (MQ=255)                                                                                                                                  gggCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAGGGTGCa                >  1:507509/1‑150 (MQ=255)                                                                                                                                  gggCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAGGGTGCa                >  2:783110/1‑150 (MQ=255)                                                                                                                                    gCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAGGGTGCAAc              >  1:56334/1‑150 (MQ=255)                                                                                                                                              cccTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGAccc                                                              >  1:119570/1‑92 (MQ=255)                                                                                                                                              cccTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGAccc                                                              <  2:119570/92‑1 (MQ=255)                                                                                                                                                cTGGTAGGAGCGGGTTCACCCGCGAAGAGAACCCGCCATACGCCCCTAAGTGCGGGTTCATTGGGGCGCCGAATTGCCGGGAACTCATCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAGGGTGCAACGGCAACAgcggc  >  1:593923/1‑150 (MQ=255)                                                                                                                                                 tGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAGGGTGCAACGGCAACAgcg    >  2:201998/1‑147 (MQ=255)                                                                                                                                                 tGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAGGGTGCAACGGCAACAgcg    <  1:201998/147‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                    GCCGAAGCGTCGTATCGGAGAGGGATGCTAACGCATGGCGGCCCGTGGACCTAGAGCCGCAGGGGGACTTTGTTGGCCAAAATGAGGGGGTTAGGCCAAAAAGCTTCGCGGGTGAACCCGCTCCTACAAGGGCATGTGTATCCCTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGTCATGCGCCCCGTAGGGCGGGTTCATCGGGGCGCCGAACCGCCGCGAACAGACCCGATCAAGCGCCGACGAGGCTCGGTTGGCCTGCGTTTTCAGGGTGCAACGGCAACAGCGGC  >  NC_002947/5724213‑5724505

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.