New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5960859	21 (1.300)	4 (0.260)	3/244	NT	17.0%	intergenic (‑166/‑74)	cyaY/PP_5226	frataxin/Lppl family lipoprotein
	?	NC_002947	= 5960878	19 (1.230)					intergenic (‑185/‑55)	cyaY/PP_5226	frataxin/Lppl family lipoprotein
Rejected: Coverage evenness skew score above cutoff.

GCTGCGTTACAGGCAAGCCGGGCAAGATACGGGCGCTTGCCGCCGAATGCAAAGGTTTAGCCGTTGCCTTCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGGGCTGCGCAGAGGCTAAGCATAGCCCGCCCGGCGGACCGGTCCTTGCATAGGCAAGCCGCCGGTCGCTCGGTATACTCGGGCGCAATACTGCATTTTTCTAAGGATTTCACCCATGAAGCGCCTGATTTCCTCCTTCGCGGCGCTGGTCGCTGTTGCCTGCCTCGTTTCGGCCTGTGGCCAGAAAGGC  >  NC_002947/5960713‑5961007                                                                                                                                                   |                                                                                                                                                     gCTGCGTTACAGGCAAGCCGGGCAAGATACGGGCGCTTGCCGCCGAATGCAAAGGTTTAGCCGTTGCCTTCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGGGCTGCGCAGAGGCTAAGCATAGCCCGCCCGGCGGACCGGTcc                                                                                                                                                   <  1:343594/150‑1 (MQ=255) gCTGCGTTACAGGCAAGCCGGGCAAGATACGGGCGCTTGCCGCCGAATGCAAAGGTTTAGCCGTTGCCTTCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGGGCTGCGCAGAGGCTAAGCATAGCCCGCCCGGCGGACCGGTcc                                                                                                                                                   <  2:203163/150‑1 (MQ=255)   tGCGTTACAGGCAAGCCGGGCAAGATACGGGCGCTTGCCGCCGAATGCAAAGGTTTAGCCGTTGCCTTCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGGGCTGCGCAGAGGCTAAGCATAGCCCGCCCGGCGGACCGGTCCtt                                                                                                                                                 <  1:359235/150‑1 (MQ=255)       ttACAGGCAAGCCGGGCAAGATACGGGCGCTTGCCGCCGAATGCAAAGGTTTAGCCGTTGCCTTCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGGGCTGCGCAGAGGCTAAGCATAGCCCGCCCGGCGGACCGGTCCTTGCAt                                                                                                                                             >  2:410388/1‑150 (MQ=255)                  ccGGGCAAGATACGGGCGCTTGCCGCCGAATGCAAAGGTTTAGCCGTTGCCTTCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGGGCTGCGCAGAGGCTAAGCATAGCCCGCCCGGCGGACCGGTCCTTGCATAGGCAAgccgc                                                                                                                                  <  1:180395/150‑1 (MQ=255)                   cGGGCAAGATACGGGCGCTTGCCGCCGAATGCAAAGGTTTAGCCGTTGCCTTCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGGGCTGCGCAGAGGCTAAGCATAGCCCGCCCGGCCGACCGCTCCTTGCATAGGCAAgccgcc                                                                                                                                 <  2:262808/150‑1 (MQ=255)                            tACGGGCGCTTGCCGCCGAATGCAAAGGTTTAGCCGTTGCCTTCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGGGCTGCGCAGAGGCTAAGCATAGCCCGCCCGGCGGACCGGTCCTTGCATAGGCAAGCCGCCGGTCGCTCg                                                                                                                        <  2:243622/150‑1 (MQ=255)                               gggCGCTTGCCGCCGAATGCAAAGGTTTAGCCGTTGCCTTCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGGGCTGCGCAGAGGCTAAGCATAGCCCGCCCGGCGGACCGGTCCTTGCATAGGCAAGCCGCCGGTCGCTCGGta                                                                                                                     >  2:58661/1‑150 (MQ=255)                                     ttGCCGCCGAATGCAAAGGTTTAGCCGTTGCCTTCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGGGCTGCGCAGAGGCTAAGCATAGCCCGCCCGGCGGACCGGTCCTTGCATAGGCAAGCCGCCGGTCGCTCGGTATACTCg                                                                                                               >  1:20915/1‑150 (MQ=255)                                              aaTGCAAAGGTTTAGCCGTTGCCTTCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGGGCTGCGCAGAGGCTAAGCATAGCCCGCCCGGCGGACCGGTCCTTGCATAGGCAAGCCGCCGGTCGCTCGGTATACTCGGGCGCAATa                                                                                                      <  2:410861/150‑1 (MQ=255)                                                    aaGGTTTAGCCGTTGCCTTCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGGGCTGCGCAGAGGCTAAGCATAGCCCGCCCGGCGGACCGGTCCTTGCATAGGCAAGCCGCCGGTCGCTCGGTATACTCGGGCGCAATACTGCAt                                                                                                >  1:60388/1‑150 (MQ=255)                                                        tttAGCCGTTGCCTTCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGGGCTGCGCAGAGGCTAAGCATAGCCCGCCCGGCGGACCGGTCCTTGCATAGGCAAGCCGCCGGTCGCTCGGTATACTCGGGCGCAATACTGCAttttt                                                                                            <  1:279670/150‑1 (MQ=255)                                                            gCCGTTGCCTTCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGGGCTGCGCAGAGGCTAAGCATAGCCCGCCCGGCGGACCGGTCCTTGCATAGGCAAGCCGCCGGTCGCTCGGTATACTCGGGCGCAATACTGCATTTTTCTaa                                                                                        <  2:60388/150‑1 (MQ=255)                                                                            gCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGGGCTGCGCAGCGGCTAAGCATAGCCCGCCCGGCGGACCGGTCCTTGCATAGGCAAGCCGCCGGTCGCTCGGTATACTCGGGCGCAATACTGCATTTTTCTAAGGATTTCACCCATGaa                                                                        >  1:400822/1‑150 (MQ=255)                                                                              ctctTCGCGGGCAAGCCCGCTCCTACAGGGGGCTGCGCAGAGGCTAAGCATAGCCCGCCCGGCGGACCGGTCCTTGCATAGGCAAGCCGCCGGTCGCTCGGTATACTCGGGCGCAATACTGCATTTTTCTAAGGCTTTCACCCATGAAgc                                                                      >  2:310103/1‑150 (MQ=255)                                                                              ctctTCGCGGGCAAGCCCGCTCCTACAGGGGGCTGCGCAGAGGCTAAGCATAGCCCGCCCGGCGGACCGGTCCTTGCATAGGCAAGCCGCCGGTCGCTCGGTATACTCGGGCGCAATACTGCATTTTTCTAAGGATTTCACCCATGAAgc                                                                      <  1:394919/150‑1 (MQ=255)                                                                                               cGCTCCTACAGGGGGCTGCGCAGAGGCTAAGCATAGCCCGCCCGGCGGACCGGTCCTTGCATAGGCAAGCCGCCGGTCGCTCGGTATACTCGGGCGCAATACTGCATTTTTCTAAGGATTTCACCCATGAAGCGCCTGATTTCCTCCTTc                                                     <  1:310103/150‑1 (MQ=255)                                                                                                            ggCTGCGCAGAGGCTAAGCATAGCCCGCCCGGCGGACCGGTCCTTGCATAGGCAAGCCGCCGGTCGCTCGGTATACTCGGGCGCAATACTGCATTTTTCTAAGGATTTCACCCATGAAGCGCCTGATTTCCTCCTTCGCGGCGCTGGTCg                                        >  1:157874/1‑150 (MQ=255)                                                                                                                      agGCTAAGCATAGCCCGCCCGGCGGACCGGTCCTTGCATAGGCAAGCCGCCGGTCGCTCGGTATACTCGGGCGCAATACTGCATTTTTCTAAGGATTTCACCCATGAAGCGCCTGATTTCCTCCTTCGCGGCGCTGGTCGCTGTtgcctg                              <  2:157874/150‑1 (MQ=255)                                                                                                                             gCATAGCCCGCCCGGCGGACCGGTCCTTGCATAGGCAAGCCGCCGGTCGCTCGGTATACTCGGGCGCAATACTGCATTTTTCTAAGGATTTCACCCATGAAGCGCCTGATTTCCTCCTTCGCGGCGCTGGTCGCTGTTGCCTGCCTCGtt                       <  2:332504/150‑1 (MQ=255)                                                                                                                                tAGCCCGCCCGGCGGACCGGTCCTTGCATAGGCAAGCCGCCGGTCGCTCGGTATACTCGGGCGCAATACTGCATTTTTCTAAGGATTTCACCCATGAAGCGCCTGATTTCCTCCTTCGCGGCGCTGGTCGCTGTTGCCTGCCTCGTTTCg                    <  1:410388/150‑1 (MQ=255)                                                                                                                                      gcccgGCGGACCGGTCCTTGCATAGGCAAGCCGCCGGTCGCTCGGTATACTCGGGCGCAATACTGCATTTTTCTCATTATTTCACCCATGACTGGCGGGATTTCCTCCTTCGCGGCGCTGGTCGCTGTTGCCTGCCTCGTTTCGGCCtgt              <  1:388801/150‑1 (MQ=255)                                                                                                                                      gcccgGCGGACCGGTCCTTGCATAGGCAAGCCGCCGGTCGCTCGGTATACTCGGGCGCAATACTGCATTTTTCTAAGGATTTCACCCATGAAGCGCCTGATTTCCTCCTTCGCGGCGCTGGTCGCTGTTGCCTGCCTCGTTTCGGCCtgt              >  2:176949/1‑150 (MQ=255)                                                                                                                                       cccgGCGGACCGGTCCTTGCATAGGCAAGCCGCCGGTCGCTCGGTATACTCGGGCGCAATACTGCATTTTTCTAAGGATTTCACCCATGAAGCGCCTGATTTCCTCCTTCGCGGCGCTGGTCGCTGTTGCCTGCCTCGTTTCGGCCtgtg             >  1:290727/1‑150 (MQ=255)                                                                                                                                                  ggTCCTTGCATAGGCAAGCCGCCGGTCGCTCGGTATACTCGGGCGCAATACTGCATTTTTCTAAGGATTTCCCCCATGAAGCGCCTGATTTCCGCCTTCGCGGCGCTGGTCGCTGTTGCCTGCCTCGTTTCGGCCTGTGGCCAGAAAGGc  <  2:20915/150‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                     GCTGCGTTACAGGCAAGCCGGGCAAGATACGGGCGCTTGCCGCCGAATGCAAAGGTTTAGCCGTTGCCTTCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGGGCTGCGCAGAGGCTAAGCATAGCCCGCCCGGCGGACCGGTCCTTGCATAGGCAAGCCGCCGGTCGCTCGGTATACTCGGGCGCAATACTGCATTTTTCTAAGGATTTCACCCATGAAGCGCCTGATTTCCTCCTTCGCGGCGCTGGTCGCTGTTGCCTGCCTCGTTTCGGCCTGTGGCCAGAAAGGC  >  NC_002947/5960713‑5961007

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.