New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5960859	21 (1.300)	4 (0.260)	3/244	NT	17.0%	intergenic (‑166/‑74)	cyaY/PP_5226	frataxin/Lppl family lipoprotein
	?	NC_002947	= 5960878	19 (1.230)					intergenic (‑185/‑55)	cyaY/PP_5226	frataxin/Lppl family lipoprotein
Rejected: Coverage evenness skew score above cutoff.

CCGGGCAAGATACGGGCGCTTGCCGCCGAATGCAAAGGTTTAGCCGTTGCCTTCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGGGCTGCGCAGAGGCTAAGCATAGCCCGCCCGGCGGACCGGTCCTTGCATAGGCAAGCCGCCGGTCGCTCGGTATACTCGGGCGCAATACTGCATTTTTCTAAGGATTTCACCCATGAAGCGCCTGATTTCCTCCTTCGCGGCGCTGGTCGCTGTTGCCTGCCTCGTTTCGGCCTGTGGCCAGAAAGGCCCGCTGTATCTGCCT  >  NC_002947/5960730‑5961022                                                                                                                                                     |                                                                                                                                                 ccGGGCAAGATACGGGCGCTTGCCGCCGAATGCAAAGGTTTAGCCGTTGCCTTCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGGGCTGCGCAGAGGCTAAGCATAGCCCGCCCGGCGGACCGGTCCTTGCATAGGCAAgccgc                                                                                                                                                 <  1:180395/150‑1 (MQ=255)  cGGGCAAGATACGGGCGCTTGCCGCCGAATGCAAAGGTTTAGCCGTTGCCTTCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGGGCTGCGCAGAGGCTAAGCATAGCCCGCCCGGCCGACCGCTCCTTGCATAGGCAAgccgcc                                                                                                                                                <  2:262808/150‑1 (MQ=255)           tACGGGCGCTTGCCGCCGAATGCAAAGGTTTAGCCGTTGCCTTCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGGGCTGCGCAGAGGCTAAGCATAGCCCGCCCGGCGGACCGGTCCTTGCATAGGCAAGCCGCCGGTCGCTCg                                                                                                                                       <  2:243622/150‑1 (MQ=255)              gggCGCTTGCCGCCGAATGCAAAGGTTTAGCCGTTGCCTTCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGGGCTGCGCAGAGGCTAAGCATAGCCCGCCCGGCGGACCGGTCCTTGCATAGGCAAGCCGCCGGTCGCTCGGta                                                                                                                                    >  2:58661/1‑150 (MQ=255)                    ttGCCGCCGAATGCAAAGGTTTAGCCGTTGCCTTCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGGGCTGCGCAGAGGCTAAGCATAGCCCGCCCGGCGGACCGGTCCTTGCATAGGCAAGCCGCCGGTCGCTCGGTATACTCg                                                                                                                              >  1:20915/1‑150 (MQ=255)                             aaTGCAAAGGTTTAGCCGTTGCCTTCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGGGCTGCGCAGAGGCTAAGCATAGCCCGCCCGGCGGACCGGTCCTTGCATAGGCAAGCCGCCGGTCGCTCGGTATACTCGGGCGCAATa                                                                                                                     <  2:410861/150‑1 (MQ=255)                                   aaGGTTTAGCCGTTGCCTTCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGGGCTGCGCAGAGGCTAAGCATAGCCCGCCCGGCGGACCGGTCCTTGCATAGGCAAGCCGCCGGTCGCTCGGTATACTCGGGCGCAATACTGCAt                                                                                                               >  1:60388/1‑150 (MQ=255)                                       tttAGCCGTTGCCTTCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGGGCTGCGCAGAGGCTAAGCATAGCCCGCCCGGCGGACCGGTCCTTGCATAGGCAAGCCGCCGGTCGCTCGGTATACTCGGGCGCAATACTGCAttttt                                                                                                           <  1:279670/150‑1 (MQ=255)                                           gCCGTTGCCTTCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGGGCTGCGCAGAGGCTAAGCATAGCCCGCCCGGCGGACCGGTCCTTGCATAGGCAAGCCGCCGGTCGCTCGGTATACTCGGGCGCAATACTGCATTTTTCTaa                                                                                                       <  2:60388/150‑1 (MQ=255)                                                           gCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGGGCTGCGCAGCGGCTAAGCATAGCCCGCCCGGCGGACCGGTCCTTGCATAGGCAAGCCGCCGGTCGCTCGGTATACTCGGGCGCAATACTGCATTTTTCTAAGGATTTCACCCATGaa                                                                                       >  1:400822/1‑150 (MQ=255)                                                             ctctTCGCGGGCAAGCCCGCTCCTACAGGGGGCTGCGCAGAGGCTAAGCATAGCCCGCCCGGCGGACCGGTCCTTGCATAGGCAAGCCGCCGGTCGCTCGGTATACTCGGGCGCAATACTGCATTTTTCTAAGGCTTTCACCCATGAAgc                                                                                     >  2:310103/1‑150 (MQ=255)                                                             ctctTCGCGGGCAAGCCCGCTCCTACAGGGGGCTGCGCAGAGGCTAAGCATAGCCCGCCCGGCGGACCGGTCCTTGCATAGGCAAGCCGCCGGTCGCTCGGTATACTCGGGCGCAATACTGCATTTTTCTAAGGATTTCACCCATGAAgc                                                                                     <  1:394919/150‑1 (MQ=255)                                                                              cGCTCCTACAGGGGGCTGCGCAGAGGCTAAGCATAGCCCGCCCGGCGGACCGGTCCTTGCATAGGCAAGCCGCCGGTCGCTCGGTATACTCGGGCGCAATACTGCATTTTTCTAAGGATTTCACCCATGAAGCGCCTGATTTCCTCCTTc                                                                    <  1:310103/150‑1 (MQ=255)                                                                                           ggCTGCGCAGAGGCTAAGCATAGCCCGCCCGGCGGACCGGTCCTTGCATAGGCAAGCCGCCGGTCGCTCGGTATACTCGGGCGCAATACTGCATTTTTCTAAGGATTTCACCCATGAAGCGCCTGATTTCCTCCTTCGCGGCGCTGGTCg                                                       >  1:157874/1‑150 (MQ=255)                                                                                                     agGCTAAGCATAGCCCGCCCGGCGGACCGGTCCTTGCATAGGCAAGCCGCCGGTCGCTCGGTATACTCGGGCGCAATACTGCATTTTTCTAAGGATTTCACCCATGAAGCGCCTGATTTCCTCCTTCGCGGCGCTGGTCGCTGTtgcctg                                             <  2:157874/150‑1 (MQ=255)                                                                                                            gCATAGCCCGCCCGGCGGACCGGTCCTTGCATAGGCAAGCCGCCGGTCGCTCGGTATACTCGGGCGCAATACTGCATTTTTCTAAGGATTTCACCCATGAAGCGCCTGATTTCCTCCTTCGCGGCGCTGGTCGCTGTTGCCTGCCTCGtt                                      <  2:332504/150‑1 (MQ=255)                                                                                                               tAGCCCGCCCGGCGGACCGGTCCTTGCATAGGCAAGCCGCCGGTCGCTCGGTATACTCGGGCGCAATACTGCATTTTTCTAAGGATTTCACCCATGAAGCGCCTGATTTCCTCCTTCGCGGCGCTGGTCGCTGTTGCCTGCCTCGTTTCg                                   <  1:410388/150‑1 (MQ=255)                                                                                                                     gcccgGCGGACCGGTCCTTGCATAGGCAAGCCGCCGGTCGCTCGGTATACTCGGGCGCAATACTGCATTTTTCTCATTATTTCACCCATGACTGGCGGGATTTCCTCCTTCGCGGCGCTGGTCGCTGTTGCCTGCCTCGTTTCGGCCtgt                             <  1:388801/150‑1 (MQ=255)                                                                                                                     gcccgGCGGACCGGTCCTTGCATAGGCAAGCCGCCGGTCGCTCGGTATACTCGGGCGCAATACTGCATTTTTCTAAGGATTTCACCCATGAAGCGCCTGATTTCCTCCTTCGCGGCGCTGGTCGCTGTTGCCTGCCTCGTTTCGGCCtgt                             >  2:176949/1‑150 (MQ=255)                                                                                                                      cccgGCGGACCGGTCCTTGCATAGGCAAGCCGCCGGTCGCTCGGTATACTCGGGCGCAATACTGCATTTTTCTAAGGATTTCACCCATGAAGCGCCTGATTTCCTCCTTCGCGGCGCTGGTCGCTGTTGCCTGCCTCGTTTCGGCCtgtg                            >  1:290727/1‑150 (MQ=255)                                                                                                                                 ggTCCTTGCATAGGCAAGCCGCCGGTCGCTCGGTATACTCGGGCGCAATACTGCATTTTTCTAAGGATTTCCCCCATGAAGCGCCTGATTTCCGCCTTCGCGGCGCTGGTCGCTGTTGCCTGCCTCGTTTCGGCCTGTGGCCAGAAAGGc                 <  2:20915/150‑1 (MQ=255)                                                                                                                                                aaGCCGCCGGTCGCTCGGTATACTCGGGCGCAATACTGCATTTTTCTAAGGATTTCACCCATGAAGCGCCTGATTTCCTCCTTCGCGGCGCAGGTCGCTGTTGCCTGCCTCGTTTCGGCCTGTGGCCAGAAAGGCCCGCTGTATCTGCCt  >  2:377369/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                 CCGGGCAAGATACGGGCGCTTGCCGCCGAATGCAAAGGTTTAGCCGTTGCCTTCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGGGCTGCGCAGAGGCTAAGCATAGCCCGCCCGGCGGACCGGTCCTTGCATAGGCAAGCCGCCGGTCGCTCGGTATACTCGGGCGCAATACTGCATTTTTCTAAGGATTTCACCCATGAAGCGCCTGATTTCCTCCTTCGCGGCGCTGGTCGCTGTTGCCTGCCTCGTTTCGGCCTGTGGCCAGAAAGGCCCGCTGTATCTGCCT  >  NC_002947/5960730‑5961022

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.