New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5665145	20 (1.240)	4 (0.270)	4/238	NT	16.5%	coding (611/834 nt)	PP_4973	membrane protein
	?	NC_002947	= 5665165	22 (1.460)					coding (591/834 nt)	PP_4973	membrane protein

CACCAGGATCACGCTCAACTCCCGCAGTGCCGCCGCTTCGGCCACTGACCCCAGGTGCATGGCCCACAGCACCAGGG‑CATAGCTGAACAATACGCAGAACCCTACCGCCAACCCAAGGCGCCATTGGGTTCGCCAGAACAGTACGAATGGCGCCCGCCGCGCTACGCTCGCCAACAACGGGAATTGCCAGGCGCTGAGCAGGGTCAGCCAGACCAGGTAATCCCACGGTTTGCCCCACAGGCGCACGGCCTGCCCGTCGAACCAGGTGTAGCAACCAATGCACAGGCCAATCAA  >  NC_002947/5665021‑5665314                                                                                                                                                  |                                                                                                                                                      caccaGGATCACGCTCAACTCCCGCAGTGCCGCCGCTTCGGCCACTGACCCCAGGTGCATGGCCCACAGCACCAGGG‑CATAGCTGAACAATACGCAGAACCCTACCGCCAACCCAAGGCGCCATTGGGTTCGCCAGAACAGTACGaatgg                                                                                                                                                  <  2:193101‑M2/150‑6 (MQ=255)       gATCACGCTCAACTCCCGCAGTGCCGCCGCTTCGGCCACTGACCCCAGGTGCATGGCCCACAGCACCAGGG‑CATAGCTGAACAATACGCAGAACCCTACCGCCAACCCAAGGCGCCATTGGGTTCGCCAGAACAGTACGAATGGcgcccg                                                                                                                                            >  2:96807/1‑150 (MQ=255)             gCTCAACTCCCGCAGTGCCGCCGCTTCGGCCACTGACCCCAGGTGCATGGCCCACAGCACCAGGG‑CATAGCTGAACAATACGCAGAACCCTACCGCCAACCCAAGGCGCCATTGGGTTCGCCAGAACAGTACGAATGGCGCCCGCCgcgc                                                                                                                                      >  2:12599/1‑150 (MQ=255)                                        ggCCACTGACCCCAGGTGCATGGCCCACAGCACCAGGG‑CATAGCTGAACAATACGCAGAACCCTACCGCCAACCCAAGGCGCCATTGGGTTCGCCAGAACAGTACGAATGGCGCCCGCCGCGCTACGCTCGCCAACAACGGGAAtt                                                                                                               >  2:217924/1‑146 (MQ=255)                                        ggCCACTGACCCCAGGTGCATGGCCCACAGCACCAGGG‑CATAGCTGAACAATACGCAGAACCCTACCGCCAACCCAAGGCGCCATTGGGTTCGCCAGAACAGTACGAATGGCGCCCGCCGCGCTACGCTCGCCAACAACGGGAAtt                                                                                                               <  1:217924/146‑1 (MQ=255)                                                aCCCCAGGTGCATGGCCCACAGCACCAGGGACATGGGTG‑TGGATGCGCAGAACCCTACCGCCAACCCAAGGCGCCATTGGGTTCGCCAGAACAGTACGAATGGCGCCCGCCGCGCTACGCTCGCCAACAACGGGAATTGCCAGGCGCTGa                                                                                                   >  1:308163/1‑150 (MQ=255)                                                 ccccAGGTGCATGGCCCACAGCACCAGGG‑CATAGCTGAACAATACGCAGAACCCTACCGCCAACCCAAGGCGCCATTGGGTTCGCCAGAACAGTACGAATGGCGCCCGCCGCGCTACGCTCGCCAACAACGGGAATTGCCAGGCGCTGAg                                                                                                  >  1:149692/1‑150 (MQ=255)                                                            tGGCCGACAGCCAGAGGG‑CATAGCTGAACAACACGCAGAACCCTACGGACAACCCAAAGCGGCAGTGGGTCCGCCAGAACAGTACGAATGGCGCCCGCAGCGCTACGCTCGGGAACAACGGGAGTTGACAGGCGCTGAGCAGGGTCAGcc                                                                                       >  2:113774/1‑150 (MQ=255)                                                                                           aTACGCAGAACCCTACCGCCAACCCAAGGCGCCATTGGGTTCGCCAGAACAGTACGAATGGCGCCCGCCGCGCTACGCTCGCCAACAACGGGAATTGCCGGGCGCTGAGCAGGGTCAGCCAGACCAGGTAATCCCACGGTTTGCCCcaca                                                         <  1:193101/150‑1 (MQ=255)                                                                                             aCGCAGAACCCTACCGCCAACCCAAGGCGCCATTGGGTTCGCCAGAACAGTACGAATGGCGCCCGCCGCGCTACGCTCGCCAACAACGGGAATTGCCAGGCGCTGAGCAGGGTCAGCCAGACCAGGTAATCCCACGGTTTGCCCCACAgg                                                       <  1:96807/150‑1 (MQ=255)                                                                                             aCGCAGAACCCTACCGCCAACCCAAGGCGCCATTGGGTTCGCCAGAACAGTACGAATGGCGCCCGCCGCGCTACGCTCGCCAACAACGGGAATTGCCAGGCGCTGAGCAGGGTCAGCCAGACCAGGTAATCCCACGCTTTGCCCCACAgg                                                       >  1:133555/1‑150 (MQ=255)                                                                                               gCAGAACCCTACCGCCAACCCAAGGCGCCATTGGGTTCGCCAGAACAGTACGAATGGCGCCCGCCGCGCTACGCTCGCCAACAACGGGAATTGCCAGGCGCTGAGCa                                                                                                >  2:259654/1‑107 (MQ=255)                                                                                               gCAGAACCCTACCGCCAACCCAAGGCGCCATTGGGTTCGCCAGAACAGTACGAATGGCGCCCGCCGCGCTACGCTCGCCAACAACGGGAATTGCCAGGCGCTGAGCa                                                                                                <  1:259654/107‑1 (MQ=255)                                                                                                     cccTACCGCCAACCCAAGGCGCCATTGGGTTCGCCAGAACAGTACGAATGGCGCCCGCCGCGCTACGCTCGCCAACAACGGGAATTGCCAGGCGCTGAGCAGGGTCAGCCAGACCAGGTAATCCCACGGTTTGCCCCACAGGCGCACGGc                                               >  2:239569/1‑150 (MQ=255)                                                                                                            gCCAACCCAAGGCGCCATTGGGTTCGCCAGAACAGTACGAATGGCGCCCGCCGCGCTACGCTCGCCAACAACGGGAATTGCCAGGCGCTGAGCAGGGTCAGCCAGACCAGGTAATCCCACGGTTTGCCCCACAGGCGCACGGCCTGCCCg                                        >  1:86552/1‑150 (MQ=255)                                                                                                             ccAACCCAAGGCGCCATTGGGTTCGCCAGAACAGTACGAATGGCGCCCGCCGCGCTACGCTCGCCAACAACGGGAATTGCCAGGCGCTGAGCAGGGTCAGCCAGACCAGGTAATCCCACGGTTTGCCCCACAGGCGCACGGCCTGCCCGt                                       >  1:402756/1‑150 (MQ=255)                                                                                                              cAACCCAAGGCGCCATTGGGTTCGCCAGAACAGTACGAATGGCGCCCGCCGCGCTACGCTCGCCAACAACGGGAATTGCCAGGCGCTGAGCAGGGTCAGCCAGACCAGGTAATCCCACGGTTTGCCCCACAGGCGCACGGCCTGCCCGTc                                      <  2:402756/150‑1 (MQ=255)                                                                                                               aaCCCAAGGCGCCATTGGGTTCGCCAGAACAGTACGaatggcgccttgggttggcggtagggttctgcgtattgttcagctatgccctggtgctgtgggccatgcacctggggtcagtggccgaagcggcggcactgcg                                                <  2:249436‑M2/139‑104 (MQ=255)                                                                                                               aaCCCAAGGCGCCATTGGGTTCGCCAGAACAGTACGaatggcgccttgggttggcggtagggttctgcgtattgttcagctatgccctggtgctgtgggccatgcacctggggtcagtggccgaagcggcggcactgcg                                                >  1:249436‑M2/1‑36 (MQ=255)                                                                                                                aCCCAAGGCGCCATTGGGTTCGCCAGAACAGTACGaatggcgccttgggttggcggtagggttctgcgtattgttcagctatgccctggtgctgtgggccatgcacctgg                                                                            <  2:214100‑M2/110‑76 (MQ=255)                                                                                                                aCCCAAGGCGCCATTGGGTTCGCCAGAACAGTACGaatggcgccttgggttggcggtagggttctgcgtattgttcagctatgccctggtgctgtgggccatgcacctgg                                                                            >  1:214100‑M2/1‑35 (MQ=255)                                                                                                                    aaGGCGCCATTGGGTTCGCCAGAACAGTACGAATGGCGCCCGCCGCGCTACGCTCGCCAACAACGGGAATTGCCAGGCGCTGAGCAGGGTCAGCCAGACCAGGTAATCCCACGGTTTGCCCCACAGGCGCACGGCCTGCCCGTCGAACCa                                >  1:381425/1‑150 (MQ=255)                                                                                                                       gcgcCATTGGGTTCGCCAGAACAGTACGAATGGCGCCCGCCGCGCTACGCTCGCCAACAACGGGAATTGCCAGGCGCTGAGCAGGGTCAGCCAGACCAGGTAATCCCACGGTTTGCCCCACAGGCGCACGGCCTGCCCGTCGAACCAGgt                             >  2:100079/1‑150 (MQ=255)                                                                                                                          ccATTGGGTTCGCCAGAACAGTACGAATGGCGCCCGCCGCGCTACGCTCGCCAACAACGGGAATTGCCAGGCGCTGAGCAGGGTCAGCCAGACCAGGTAATCCCACGGTTTGCCCCACAGGCGCACGGCCTGCCCGTCGAACCAGGTGTa                          <  1:239569/150‑1 (MQ=255)                                                                                                                          ccATTGGGTTCGCCAGAACAGTACGAATGGCGCCCGCCGCGCTACGCTCGCCAACAACGGGAATTGCCAGGCGCTGAGCAGGGTCAGCCAGACCAGGTAATCCCACGGTTTGCCCCACAGGCGCACGGCCTGCCCGTCGAACCAGGTGTa                          <  1:12599/150‑1 (MQ=255)                                                                                                                                       cAGAACAGTACGAATGGCGCCCGCCGCGCTACGCTCGCCAACAACGGGAATTGCCAGGCGCTGAGCAGGGTCAGCCAGACCAGGTAATCCCACGGTTTGCCCCACAGGCGCACGGCCTGCCCGTCGAACCAGGTGTAGCAACCAATGcac             >  1:162259/1‑150 (MQ=255)                                                                                                                                           aCAGTACGAATGGCGCCCGCCGCGCTACGCTCGCCAACAACGGGAATTGCCAGGCGCTGAGCAGGGTCAGCCAGAc                                                                                   >  1:96364/1‑76 (MQ=255)                                                                                                                                           aCAGTACGAATGGCGCCCGCCGCGCTACGCTCGCCAACAACGGGAATTGCCAGGCGCTGAGCAGGGTCAGCCAGAc                                                                                   <  2:96364/76‑1 (MQ=255)                                                                                                                                                 cGAATGGCGCCCGCCGCGCTACGCTCGCCAACAACGGGAATTGCCAGGCGCTGAGCAGGGTCAGCCAGACCAGGTAATCCCACGGTTTGCCCCACAGGCGCACGGCCTGCCCGTCGaa                                   <  1:439507/118‑1 (MQ=255)                                                                                                                                                 cGAATGGCGCCCGCCGCGCTACGCTCGCCAACAACGGGAATTGCCAGGCGCTGAGCAGGGTCAGCCAGACCAGGTAATCCCACGGTTTGCCCCACAGGCGCACGGCCTGCCCGTCGaa                                   >  2:439507/1‑118 (MQ=255)                                                                                                                                                  gAATGGCGCCCGCCGCGCTACGCTCGCCAACAACGGGAATTGCCAGGCGCTGAGCAGGGTCAGCCAGACCAGGTAATCCCACGGTTTGCCCCACAGGCGCACGGCCTGCCCGTCGAACCAGGTGTAGCAACCAATGCACAGGCCAATCaa  >  2:365634/1‑150 (MQ=255)                                                                                                                                                  |                                                                                                                                                      CACCAGGATCACGCTCAACTCCCGCAGTGCCGCCGCTTCGGCCACTGACCCCAGGTGCATGGCCCACAGCACCAGGG‑CATAGCTGAACAATACGCAGAACCCTACCGCCAACCCAAGGCGCCATTGGGTTCGCCAGAACAGTACGAATGGCGCCCGCCGCGCTACGCTCGCCAACAACGGGAATTGCCAGGCGCTGAGCAGGGTCAGCCAGACCAGGTAATCCCACGGTTTGCCCCACAGGCGCACGGCCTGCCCGTCGAACCAGGTGTAGCAACCAATGCACAGGCCAATCAA  >  NC_002947/5665021‑5665314

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.