New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4536247 =	NA (NA)	29 (0.700)	28/270	0.6	87.9%	intergenic (+730/‑85)	PP_4022/PP_4024	hypothetical protein/transposase
	?	NC_002947	4965165 =	4 (0.100)					coding (238/1476 nt)	fleQ	transcriptional regulator FleQ

GAAAGTCCACGGGCTTGGGGTAGAGGTAGACTTTTTCGACTTTGCTGTCGGGGCGCATCATGGCGGGCTGGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4536392‑4536247 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAACTCATCCCAGGTAGCCACTGTCTTAAGCAGCCCAAGCAGATTGCCCGGAGCATTCACGGTGCCGATGAGCACGCACAGCACTTCGCGGCTCGAGGACAATGGCTCGACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTT  >  NC_002947/4965165‑4965312                                                                                                                                                                                                                                                                                                        GAAAGTCCACGGGCTTGGGGTAGAGGTAGACTTTTTCGACTTTGCTGTCGGGGCGCATCATGGCGGGCTGGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGGAA                                                                                                                                                  <  2:691856/150‑1  AAAGTCCACGGGCTTGGGGTAGAGGTAGACTTTTTCGACTTTGCTGTCGGGGCGCATCATGGCGGGCTGGCTCCAGAAAGAAATCGGGAGCACAGCATCGCGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGGAAC                                                                                                                                                 >  1:481706/1‑150    AGTCCACGGGCTTGGGGTAGAGGTAGACTTTTTCGACTTTGCTGTCGGGGCGCATCATGGCGGGCTGGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGGAACTC                                                                                                                                               >  1:652000/1‑150         ACGGGCTTGGGGTAGAGGTAGACTTTTTCGACTTTGCTGTCGGGGCGCATCATGGCGGGCTGGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGGGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGGAACTCATCCC                                                                                                                                          >  2:344832/1‑150                    GTAGAGGTAGACTTTTTCGACTTTGCTGTCGGGGCGCATCATGGCGGGCTGGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGGAACTCATCCCAGGTAGCCACT                                                                                                                               >  2:845159/1‑150                           TAGACTTTTTCGACTTTGCTGTCGGGGCGCATCATGGCGGGCTGGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGGAACTCATCCCAGGTAGCCACTGTCTTAA                                                                                                                        <  2:652000/150‑1                           TAGACTTTTTCGACTTTGCTGTCGGGGCGCATCATGGCGGGCTGGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGGAACTCATCCCAGGTAGCCACTGTCTTAA                                                                                                                        <  1:477068/150‑1                                TTTTTCGACTTTGCTGTCGGGGCGCATCATGGCGGGCTGGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGGAACTCATCCCAGGTAGCCACTGTCTTAAGCAGC                                                                                                                   >  1:868198/1‑150                                      GACTTTGCTGTCGGGGCGCATCATGGCGGGCTGGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGGAACTCATCCCAGGTAGCCACTGTCTTAAGCAGCCCAAGC                                                                                                             <  1:845159/150‑1                                               GTCGGGGCGCATCATGGCGGGCTGGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGGAACTCATCCCAGGTAGCCACTGTCTTCAGCAGCCCAAGCAGGTTGCCC                                                                                                    <  2:864068/150‑1                                                   GGGCGCATCATGGCGGGCTGGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGGAACTCATCCCAGGTAGCCA                                                                                                                                 >  1:285006/1‑117                                                   GGGCGCATCATGGCGGGCTGGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGGAACTCATCCCAGGTAGCCA                                                                                                                                 <  2:285006/117‑1                                                       GCATCATGGCGGGCTGGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGGAACTCATCCCAGGTAGCCACTGTCTTAAGCAGCCCAAGCAGATTGCCCGGAGCATT                                                                                            >  1:93750/1‑150                                                                     TGGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGAATCCGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGGAACTCATCCCAGGTTTCCACTGTCTTAAGCAGCCCAAGCAGATTGCCCGGAGCATTCACGGTGCCGATGA                                                                              <  1:290064/150‑1                                                                     TGGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGGAACTCATCC                                                                                                                                           <  1:370470/89‑1                                                                     TGGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGGAACTCATCC                                                                                                                                           >  2:370470/1‑89                                                                             GAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGGAACTCATCCCAGGTAGCCACTGTCTTAAGCAGCCCAAGCAGATTGCCCGGAGCATTCACGGTGCCGAT                                                                                <  2:434999/140‑1                                                                             GAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGGAACTCATCCCAGGTAGCCACTGTCTTAAGCAGCCCAAGCAGATTGCCCGGAGCATTCACGGTGCCGAT                                                                                >  1:434999/1‑140                                                                               AAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGGAACTCATCCCAGGTAGCCACTGTCTTAAGCAGCCCAAGCAGATTGCCCGGAGCATTCACGGTGCCGATGAGCACGCACAG                                                                    >  2:1017178/1‑150                                                                                                          TCAGGTGGACGGTTGGAATGTGGGGATGATGGATCGCTTACGGAACTCATCCCAGGTAGCCACTGTCTTAAGCAGCCCAAGCAGATTGCCCGGAGCATTCACGGTGCCGATGAGCACGCACAGCACTTCGCGGCTCGAGGACAATGGCTC                                         >  2:224272/1‑150                                                                                                                 GACGGTTGGAATGTGGGGATGATGGATCCCTTACGGAACTCATCCCAGGTAGCCACTGTCTTAAGCAGCCCAAGCAGATTGCCCGGAGCATTCACGGTGCCGATGAGCACGCACAGCACTTCGCGGCTCGAGGACAATGGCTCGACCGCC                                  >  2:284182/1‑150                                                                                                                         GAATGTGGGGATGATGGATCCCTTACGGAACTCATCCCAGGTAGCCACTGTCTTAAGCAGCCCAAGCAGATTGCCCGGAGCATTCACGGTGCCGATGAGCACGCACAGCACTTCGCGGCTCGAGGACAATGGCTCGACCGCCTGCTGCCA                          <  1:1017178/150‑1                                                                                                                           ATGTGGGGATGATGGATCCCTTACGGAACTCATCCCAGGTAGCCACTGTCTTAAGCAGCCCAAGCAGATTGCCCGGAGCATTCACGGTGCCGATGAGCACGCACAGCACTTCGCGGCTCGAGGACAAT                                              >  2:165926/1‑128                                                                                                                           ATGTGGGGATGATGGATCCCTTACGGAACTCATCCCAGGTAGCCACTGTCTTAAGCAGCCCAAGCAGATTGCCCGGAGCATTCACGGTGCCGATGAGCACGCACAGCACTTCGCGGCTCGAGGACAAT                                              <  1:165926/128‑1                                                                                                                               GGGGATGATGGATCCCTTACGGAACTCATCCCAGGTAGCCACTGTCTTAAGCAGCCCAAGCAGATTGCCCGGAGCATTCATGGTGCCGATGAGCACGCACAGGACTTCGCGGCTCGAGGACAATGGCTAGACCGCCTGCTGCCAGTCAgg                    >  1:173188/1‑148                                                                                                                               GGGGATGAGGGATCCCTTACGGAACTCATCCCAGGTAGCCACTGTCTTAAGCAGCCCAAGCAGATTGCCCGGAGCATTCACGGTGCCGATGAGCACGCACAGCACTTCGCGGCTCGAGGACAATGGCTCGACCGACTGCTGCCAGTCATG                    <  1:150361/150‑1                                                                                                                                        GGATCCCTTACGGAACTCATCCCAGGTAGCCACTGTCTTAAGCAGCCCAAGCAGATTGCCCGGAGCATTCACGGTGCCGATGAGCACGCACAGCACTTCGCGGCTCGAGGACAATGGCTCGACCGCCTGCTGCCAGTCATGGCTGGCACA           >  1:504292/1‑150                                                                                                                                               TTACGGAACTCATCCCAGGTAGCCACTGTCTTAAGCAGCCCAAGCAGATTGCCCGGAGCATTCACGGTGCCGATGAGCACGCACAGCACTTCGCGGCTCGAGGACAATGGCTCGACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGG    >  2:369622/1‑150                                                                                                                                                 ACGGAACTCATCCCAGGTAGCCACTGTCTTAAGCAGCCCAAGCAGATTGCCCGGAGCATTCACGGTGCCGATGAGCACGCACAGCACTTCGCGGCTCGAGGACAATGGCTCGACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTT  <  2:868198/150‑1                                                                                                                                                                                                                                                                                                        GAAAGTCCACGGGCTTGGGGTAGAGGTAGACTTTTTCGACTTTGCTGTCGGGGCGCATCATGGCGGGCTGGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4536392‑4536247 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAACTCATCCCAGGTAGCCACTGTCTTAAGCAGCCCAAGCAGATTGCCCGGAGCATTCACGGTGCCGATGAGCACGCACAGCACTTCGCGGCTCGAGGACAATGGCTCGACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTT  >  NC_002947/4965165‑4965312

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.