| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4536247 = | NA (NA) | 29 (0.700) | 28/270 | 0.6 | 87.9% | intergenic (+730/‑85) | PP_4022/PP_4024 | hypothetical protein/transposase |
| ? | NC_002947 | 4965165 = | 4 (0.100) | coding (238/1476 nt) | fleQ | transcriptional regulator FleQ | |||||
ATACATTTCGCGGTAGACCTGGGCACGGTGCAGCGAGTCCAGCAATTGGCTGTAGCTTGGCGGCATTTCCAGGTTGGAAAGCACCCGGCGGCGAAGGTCTTCCGGCAGCTCGGCGGAAGAAATTTCACCTAAAAGCAAAACCGGAAGGAACTCATCCCAGGTAGCCACTGTCTTAAGCAGCCCAAGCAGATTGCCCGGAGCATTCACGGTGCCGATGAGCACGCACAGCACTTCGCGGCTCGAGGACAATGGCTCGACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTT > NC_002947/4965019‑4965312 | gaaagtccacgggcttggggtagaggtagactttttcgactttgctgtcggggcgcatcatggcgggctggctccagaaagaaatcgggagcacagcatcgggaatcaggtggacggttggaatgtggggatgatggatcccttacGGaa < 2:691856‑M2/4‑1 (MQ=255) aaagtccacgggcttggggtagaggtagactttttcgactttgctgtcggggcgcatcatggcgggctggctccagaaagaaatcgggagcacagcatcgcgaatcaggtggacggttggaatgtggggatgatggatcccttacGGAAc > 1:481706‑M2/146‑150 (MQ=255) agtccacgggcttggggtagaggtagactttttcgactttgctgtcggggcgcatcatggcgggctggctccagaaagaaatcgggagcacagcatcgggaatcaggtggacggttggaatgtggggatgatggatcccttacGGAACTc > 1:652000‑M2/144‑150 (MQ=255) ttCGCGGTAGACCTGGGCACGGTGCAGCGAGTCCAGCAATTGGCTGTAGCTTGGCGGCATTTCCAGGTTGGAAAGCACCCGGCGGCGAAGGTCTTCCGGCAGCTCGGCGGAAGAAATTTCACCTAAAAGCAAAACCGGAAGGAACTCAgt > 2:471178‑M2/1‑148 (MQ=255) acgggcttggggtagaggtagactttttcgactttgctgtcggggcgcatcatggcgggctggctccagaaagaaatcgggagcacagcatcgggaatcagggggacggttggaatgtggggatgatggatcccttacGGAACTCATccc > 2:344832‑M2/139‑150 (MQ=255) gTAGACCTGGGCACGGTGCAGCGAGTCCAGCAATTGGCTGTAGCTTGGCGGCATTTCCAGGTTGGAAAGCACCCGGCGGCGAAGGTCTTCCGGCAGCTCGGCGGAAGAAATTTCACCTAAAAGCAAAACCGGAAGGAACTCAgtaaccga > 1:477009‑M2/1‑142 (MQ=255) gtagaggtagactttttcgactttgctgtcggggcgcatcatggcgggctggctccagaaagaaatcgggagcacagcatcgggaatcaggtggacggttggaatgtggggatgatggatcccttacGGAACTCATCCCAGGTAGCCACt > 2:845159‑M2/128‑150 (MQ=255) aCGGTGCAGCGAGTCCAGCAATTGGCTGTAGCTTGGCGGCATTTCCAGGTTGGAAAGCACCCGGCGGCGAAGGTATTCCGGCAGCTCGGCTGAATAAATTTCACCTAAAAGCAAAACCGGAAGGAACTCAgtaaccgatccatgaacccc > 1:125609‑M2/1‑130 (MQ=255) tagactttttcgactttgctgtcggggcgcatcatggcgggctggctccagaaagaaatcgggagcacagcatcgggaatcaggtggacggttggaatgtggggatgatggatcccttacGGAACTCATCCCAGGTAGCCACTGTCTTaa < 2:652000‑M2/30‑1 (MQ=255) tagactttttcgactttgctgtcggggcgcatcatggcgggctggctccagaaagaaatcgggagcacagcatcgggaatcaggtggacggttggaatgtggggatgatggatcccttacGGAACTCATCCCAGGTAGCCACTGTCTTaa < 1:477068‑M2/30‑1 (MQ=255) tttttcgactttgctgtcggggcgcatcatggcgggctggctccagaaagaaatcgggagcacagcatcgggaatcaggtggacggttggaatgtggggatgatggatcccttacGGAACTCATCCCAGGTAGCCACTGTCTTAagcagc > 1:868198‑M2/116‑150 (MQ=255) aGTCCAGCAATTGGCTGTAGCTTGGCGGCATTTCCAGGTTGGAAAGCACCCGGCGGCGAAGGTCTTCCGGCAGCTCGGCGGAAGAAATTTCACCTAAAAGCAAAACCGGAAGGAACTc > 2:800020/1‑118 (MQ=255) aGTCCAGCAATTGGCTGTAGCTTGGCGGCATTTCCAGGTTGGAAAGCACCCGGCGGCGAAGGTCTTCCGGCAGCTCGGCGGAAGAAATTTCACCTAAAAGCAAAACCGGAAGGAACTc < 1:800020/118‑1 (MQ=255) aGTCCAGCAATTGGCTGTAGCTTGGCGGCATTTCCAGGTTGGAAAGCACCCGGCGGCGAAGGTCTTCCGGCAGCTCGGCGGAAGAAATTTCACCTAAAAGCAAAACCGGAAGGAACTc > 2:800113/1‑118 (MQ=255) aGTCCAGCAATTGGCTGTAGCTTGGCGGCATTTCCAGGTTGGAAAGCACCCGGCGGCGAAGGTCTTCCGGCAGCTCGGCGGAAGAAATTTCACCTAAAAGCAAAACCGGAAGGAACTc < 1:800113/118‑1 (MQ=255) aGTCCAGCAATTGGCTGTAGCTTGGCGGCATTTCCAGGTTGGAAAGCACCCGGCGGCGAAGGTCTTCCGGCAGCTCGGCGGAAGAAATTTCACCTAAAAGCAAAACCGGAAGGAACTCAgtaaccgatccatgtaccccacctaccacaa > 2:42913‑M2/1‑119 (MQ=255) gTCCAGCAATTGGCTGTAGCTTGGCGGCATTTCCAGGTTGGAAAGCACCCGGCGGCGAAGGTCTTCCGGCAGCTCGGCGGAAGAAATTTCACCTAAAAGCAACACCGGAAGGAACTCAgtatccgatccatgaaccccacctaccacaag > 2:378069‑M2/1‑118 (MQ=255) gactttgctgtcggggcgcatcatggcgggctggctccagaaagaaatcgggagcacagcatcgggaatcaggtggacggttggaatgtggggatgatggatcccttacGGAACTCATCCCAGGTAGCCACTGTCTTAAGCAGCCCAAGc < 1:845159‑M2/41‑1 (MQ=255) aGCAATTGGCTGTAGCTTGGCGGCATTTCCAGGTTGGAAAGCACCCGGCGGCGAAGGTCTTCCGGCAGCTCGGCGGAAGAAATTTCACCTAAAAGCAAAACCAAGATGAACTCAgtaaccgatccatgaaccccacctaccacaaggtgg < 1:880294‑M2/150‑37 (MQ=255) aTTGGCTGTAGCTTGGCGGCATTTCCAGGTTGGAAAGCACCCGGCGGCGAAGGTCTTCCGGCAGCTCGGCGGAAGAAATTTCACCTAAAAGCAAAACCGGAAGGAACTCAgtaaccgatccatgaaccccacctaccacaaggtggaagc > 2:252608‑M2/1‑110 (MQ=255) gtcggggcgcatcatggcgggctggctccagaaagaaatcgggagcacagcatcgggaatcaggtggacggttggaatgtggggatgatggatcccttacGGAACTCATCCCAGGTAGCCACTGTCTTCAGCAGCCCAAGCAGGTTGccc < 2:864068‑M2/50‑1 (MQ=255) gCTGTAGCTTGGCGGCATTTCCAGGTTGGAAAGCACCCGGCGGCGAAGGTCTTCCGGCAGCTCGGCGGAAGAAATTTCACCTAAAAGCAAAACCGGAAGGAACTCAgtaaccgatccat < 1:618875‑M2/119‑14 (MQ=255) gCTGTAGCTTGGCGGCATTTCCAGGTTGGAAAGCACCCGGCGGCGAAGGTCTTCCGGCAGCTCGGCGGAAGAAATTTCACCTAAAAGCAAAACCGGAAGGAACTCAgtaaccgatccat > 2:618875‑M2/1‑106 (MQ=255) gggcgcatcatggcgggctggctccagaaagaaatcgggagcacagcatcgggaatcaggtggacggttggaatgtggggatgatggatcccttacGGAACTCATCCCAGGTAGCCa < 2:285006‑M2/21‑1 (MQ=255) gggcgcatcatggcgggctggctccagaaagaaatcgggagcacagcatcgggaatcaggtggacggttggaatgtggggatgatggatcccttacGGAACTCATCCCAGGTAGCCa > 1:285006‑M2/97‑117 (MQ=255) tAGCTTGGCGGCATTTCCAGGTTGACACGTGTCCGGCGGCGAAGGTCTTCCGGCAGCTCGGCGGAAGAAATTTCACCTAAAAGCAAAACCGGAAGGAACTCAgtaaccgatccatgaaccccacctaccacaaggtggaagccaaagtta > 1:770319‑M2/1‑102 (MQ=255) gcatcatggcgggctggctccagaaagaaatcgggagcacagcatcgggaatcaggtggacggttggaatgtggggatgatggatcccttacGGAACTCATCCCAGGTAGCCACTGTCTTAAGCAGCCCAAGCAGATTGCCCGGAGCAtt > 1:93750‑M2/93‑150 (MQ=255) tttCCAGGTTGGAAAGCACCCGGCGGCGAAGGTCTTCCGGCAGCTCGGCGGAAGAAATTTCACCTAAAAGCAAAACCGGAAGGAACTCAgtaaccgatccatgaaccccacctaccacaaggtggaagccaaagttaccgtggcatctct < 1:513751‑M2/150‑62 (MQ=255) tttCCAGGTTGGAAAGCACCCGGCGGCGAAGGTCTTCCGGCAGCTCGGCGGAAGAAATTTCACCTAAAAGCAAAACCGGAAGGAACTCAgtaaccgatccatgaaccccacctaccacaaggtggaagccaaagttacc > 1:712123‑M2/1‑89 (MQ=255) tttCCAGGTTGGAAAGCACCCGGCGGCGAAGGTCTTCCGGCAGCTCGGCGGAAGAAATTTCACCTAAAAGCAAAACCGGAAGGAACTCAgtaaccgatccatgaaccccacctaccacaaggtggaagccaaagctacc < 2:712123‑M2/139‑51 (MQ=255) tggctccagaaagaaatcgggagcacagcatcgggaatccggtggacggttggaatgtggggatgatggatcccttacGGAACTCATCCCAGGTTTCCACTGTCTTAAGCAGCCCAAGCAGATTGCCCGGAGCATTCACGGTGCCGATGa < 1:290064‑M2/72‑1 (MQ=255) tggctccagaaagaaatcgggagcacagcatcgggaatcaggtggacggttggaatgtggggatgatggatcccttacGGAACTCATcc > 2:370470‑M2/79‑89 (MQ=255) tggctccagaaagaaatcgggagcacagcatcgggaatcaggtggacggttggaatgtggggatgatggatcccttacGGAACTCATcc < 1:370470‑M2/11‑1 (MQ=255) ccAGGTTGGAAAGCACCCGGCGGCGAAGGTCTTCCGGCAGTTCGGCGGAAGAAATTTCACCTAAAAGCAAAACCGGAAGGAACTCAgtaaccgatccatgaaccccacctaccacaaggtggaagccaaagttaccgtggcatctctggc < 1:1004943‑M2/150‑65 (MQ=255) gaaagaaatcgggagcacagcatcgggaatcaggtggacggttggaatgtggggatgatggatcccttacGGAACTCATCCCAGGTAGCCACTGTCTTAAGCAGCCCAAGCAGATTGCCCGGAGCATTCACGGTGCCGAt > 1:434999‑M2/71‑140 (MQ=255) gaaagaaatcgggagcacagcatcgggaatcaggtggacggttggaatgtggggatgatggatcccttacGGAACTCATCCCAGGTAGCCACTGTCTTAAGCAGCCCAAGCAGATTGCCCGGAGCATTCACGGTGCCGAt < 2:434999‑M2/70‑1 (MQ=255) aagaaatcgggagcacagcatcgggaatcaggtggacggttggaatgtggggatgatggatcccttacGGAACTCATCCCAGGTAGCCACTGTCTTAAGCAGCCCAAGCAGATTGCCCGGAGCATTCACGGTGCCGATGAGCACGCACAg > 2:1017178‑M2/69‑150 (MQ=255) cACCCGGCGGCGAAGGTCTTCCGGCAGCTCGGCGGAAGAAATTTCACCTAAAAGCAAAACCGGAAGGAACTCAgtaaccgatccatgaaccccacctaccacaaggtggaagccaaagtta < 2:306659‑M2/121‑49 (MQ=255) cACCCGGCGGCGAAGGTCTTCCGGCAGCTCGGCGGAAGAAATTTCACCTAAAAGCAAAACCGGAAGGAACTCAgtaaccgatccatgaaccccacctaccacaaggtggaagccaaagtta > 1:306659‑M2/1‑73 (MQ=255) cccGGCGGCGAAGGTCTTCCGGCAGCTCGGCGGAAGAAATTTCACCTAAAAGCAAAACCGGAAGGAACTCAgtaaccgatccatgaaccccacctaccacaaggtggaagccaaagttaccgtggcatctctggcgaacagttccatggc > 1:153634‑M2/1‑71 (MQ=255) tCTTCCGGCAGCTCGGCGGAAGAAATTTCACCTAAAAGCAAAACCGGAAGGAACTCAgtaaccgatccatgaaccccacctaccacaaggtggaagccaaagttaccgtggcatctctggcgaacagttccatggcagcagcgcttcgta < 1:965604‑M2/150‑94 (MQ=255) ccGGCAGCTCGGCGGAAGAAATTTCACCTAAAAGCAAAACCGGAAGGAACTCAgtaaccgatccatgaaccccacctaccacaaggtggaagccaaagttaccgtggcatctctggcgaacagttccatggcagcagcgcttcgtagtct > 1:848293‑M2/1‑53 (MQ=255) gCAGCTCGGCGGAAGAAATTTCACCTAAAAGCAAAACCGGAAGGAACTCAgtaaccgatccatgaaccccacctaccacaaggtggaagccaaagttaccgtggcatctctggcgaacagttccatggcagcagcgcttcgtagtctgct < 1:418760‑M2/150‑101 (MQ=255) tcaggtggacggttggaatgtggggatgatggatcgcttacGGAACTCATCCCAGGTAGCCACTGTCTTAAGCAGCCCAAGCAGATTGCCCGGAGCATTCACGGTGCCGATGAGCACGCACAGCACTTCGCGGCTCGAGGACAATGGCTc > 2:224272‑M2/42‑150 (MQ=255) gacggttggaatgtggggatgatggatcccttacGGAACTCATCCCAGGTAGCCACTGTCTTAAGCAGCCCAAGCAGATTGCCCGGAGCATTCACGGTGCCGATGAGCACGCACAGCACTTCGCGGCTCGAGGACAATGGCTCGACCGcc > 2:284182‑M2/35‑150 (MQ=255) gaatgtggggatgatggatcccttacGGAACTCATCCCAGGTAGCCACTGTCTTAAGCAGCCCAAGCAGATTGCCCGGAGCATTCACGGTGCCGATGAGCACGCACAGCACTTCGCGGCTCGAGGACAATGGCTCGACCGCCTGCTGCCa < 1:1017178‑M2/124‑1 (MQ=255) aTTTCACCTAAAAGCAAAACCGGAAGGAACTCAgtaaccgatccatgaaccccacctaccacaaggtggaagccaaagttaccgtggcatctctggcgaacagttccatggcagcagcgcttcgtagtctgctaccgatgaggcgtgc > 2:345011‑M2/1‑33 (MQ=255) aTTTCACCTAAAAGCAAAACCGGAAGGAACTCAgtaaccgatccatgaaccccacctaccacaaggtggaagccaaagttaccgtggcatctctggcgaacagttccatggcagcagcgcttcgtagtctgctaccgatgaggcgtgc < 1:345011‑M2/148‑116 (MQ=255) atgtggggatgatggatcccttacGGAACTCATCCCAGGTAGCCACTGTCTTAAGCAGCCCAAGCAGATTGCCCGGAGCATTCACGGTGCCGATGAGCACGCACAGCACTTCGCGGCTCGAGGACAAt > 2:165926‑M2/25‑128 (MQ=255) atgtggggatgatggatcccttacGGAACTCATCCCAGGTAGCCACTGTCTTAAGCAGCCCAAGCAGATTGCCCGGAGCATTCACGGTGCCGATGAGCACGCACAGCACTTCGCGGCTCGAGGACAAt < 1:165926‑M2/104‑1 (MQ=255) ggggatgatggatcccttacGGAACTCATCCCAGGTAGCCACTGTCTTAAGCAGCCCAAGCAGATTGCCCGGAGCATTCATGGTGCCGATGAGCACGCACAGGACTTCGCGGCTCGAGGACAATGGCTAGACCGCCTGCTGCCAGtcagg > 1:173188‑M2/21‑148 (MQ=255) ggggatgagggatcccttacGGAACTCATCCCAGGTAGCCACTGTCTTAAGCAGCCCAAGCAGATTGCCCGGAGCATTCACGGTGCCGATGAGCACGCACAGCACTTCGCGGCTCGAGGACAATGGCTCGACCGACTGCTGCCAGTCAtg < 1:150361‑M2/130‑1 (MQ=255) cTAAAAGCAAAACCGGAAGGAACTCAgtaaccgatccatgaaccccacctaccacaaggtggaagccaaagttaccgtggcatctctgg > 2:303739‑M2/1‑26 (MQ=255) cTAAAAGCAAAACCGGAAGGAACTCAgtaaccgatccatgaaccccacctaccacaaggtggaagccaaagttaccgtggcatctctgg < 1:303739‑M2/89‑64 (MQ=255) ggatcccttacGGAACTCATCCCAGGTAGCCACTGTCTTAAGCAGCCCAAGCAGATTGCCCGGAGCATTCACGGTGCCGATGAGCACGCACAGCACTTCGCGGCTCGAGGACAATGGCTCGACCGCCTGCTGCCAGTCATGGCTGGcaca > 1:504292‑M2/12‑150 (MQ=255) aaCCGGAAGGAACTCAgtaaccgatccatgaaccccacctaccacaaggtggaagccaaagttaccgtggcatctctggcgaacagttccatggcagcagcgcttcgtagtctgctaccgatgaggcgtgcggcagtcgctccaggacgt > 2:132099‑M2/1‑16 (MQ=255) ttacGGAACTCATCCCAGGTAGCCACTGTCTTAAGCAGCCCAAGCAGATTGCCCGGAGCATTCACGGTGCCGATGAGCACGCACAGCACTTCGCGGCTCGAGGACAATGGCTCGACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAgg > 2:369622‑M2/5‑150 (MQ=255) ggaaggaaCTCAgtaaccgatccatgaaccccacctaccacaaggtggaagccaaagttaccgtggcatctctggcgaacagttccatggcagcagcgcttcgtagtctgctaccgatgaggcgtgcggcagtcgctccaggacgtggcg < 1:794395‑M2/150‑139 (MQ=255) acGGAACTCATCCCAGGTAGCCACTGTCTTAAGCAGCCCAAGCAGATTGCCCGGAGCATTCACGGTGCCGATGAGCACGCACAGCACTTCGCGGCTCGAGGACAATGGCTCGACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGtt < 2:868198‑M2/148‑1 (MQ=255) | ATACATTTCGCGGTAGACCTGGGCACGGTGCAGCGAGTCCAGCAATTGGCTGTAGCTTGGCGGCATTTCCAGGTTGGAAAGCACCCGGCGGCGAAGGTCTTCCGGCAGCTCGGCGGAAGAAATTTCACCTAAAAGCAAAACCGGAAGGAACTCATCCCAGGTAGCCACTGTCTTAAGCAGCCCAAGCAGATTGCCCGGAGCATTCACGGTGCCGATGAGCACGCACAGCACTTCGCGGCTCGAGGACAATGGCTCGACCGCCTGCTGCCAGTCATGGCTGGCACACGCGAGGTT > NC_002947/4965019‑4965312 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |