New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 4536247 = | NA (NA) | 29 (0.700) | 28/270 | 0.6 | 87.9% | intergenic (+730/‑85) | PP_4022/PP_4024 | hypothetical protein/transposase |
? | NC_002947 | 4965165 = | 4 (0.100) | coding (238/1476 nt) | fleQ | transcriptional regulator FleQ |
GGGCGTTCTGGACGGTCAGTACCCTGCTGCTGTACCCCATCGACCTGGTACGCGCCAGCGGCGTGGCGCGCAGCATGAACTTCGTCAGCAACATCGCGGCGCTGACGGTTTTCATCATTTCCGGGCAGGTGGACTATATCGTTGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAAGTCTACCTCTACCCCAAGCCCGTGGACTTTC > NC_002947/4536104‑4536392 | gggCGTTCTGGACGGTCAGTACCCTGCTGCTGTACCCCATCGACCTGGTACGCGCCAGCGGCGTGGCGCGCAGCATGAACTTCGTCAGCAACATCGCGGCGCTGACGGTTTTCATCATTTCCGGGCAGGTGGACTATATCGTTGTAAggg < 1:749174/150‑1 (MQ=255) gCGTTCTGGACGGTCAGTACCCTGCTGCTGTACCCCATCGACCTGGTACGCGCCAGCGGCGTGGCGCGCAGCATGAACTTCGTCAGCAACATCGCGGCGCTGACGGTTTTCATCATTTCCGGGCAGGTGGACTATATCGTTGTAAGGGAt < 1:427423/150‑1 (MQ=255) ttCTGGACGGTCAGTACCCTGCTGCTGTACCCCATCGACCTGGTACGCGCCAGCGGCGTGGCGCGCAGCATGAACTTCGTCAGCAACATCGCGGCGCTGACGGTTTTCATCATTTCCGGGCAGGTGGACTATATCGTTGTAAGGGATCca > 2:16122/1‑150 (MQ=255) ggTCAGTACCCTGCTGCTGTACCCCATCGACCTGGTACGCGCCAGCGGCGTGGCGCGCAGCATGAACTTCGTCAGCAACATCGCGGCGCTGACGGTTTTCATCATTTCCGGGCAGGTGGACTATATCGTTGTAAGGGATCCATCATcccc < 1:16122/150‑1 (MQ=255) ccTGCTGCTGTACCCCATCGACCTGGTACGCGCCAGCGGCGTGGCGCGCAGCATGAACTTCGTCAGCAACATCGCGGCGCTGACGGTTTTCATCATTTCCGGGCAGGTGGACTATATCGTTGTAAGGGAt > 2:628348/1‑130 (MQ=255) ccTGCTGCTGTACCCCATCGACCTGGTACGCGCCAGCGGCGTGGCGCGCAGCATGAACTTCGTCAGCAACATCGCGGCGCTGACGGTTTTCATCATTTCCGGGCAGGTGGACTATATCGTTGTAAGGGAt < 1:628348/130‑1 (MQ=255) ccTGCTGCTGTACCCCATCGACCTGGTACGCGCCAGCGGCGTGGCGCGCAGCATGAACTTCGTCAGCAACATCGCGGCGCTGACGGTTTTCATCATTTCCGGGCAGGTGGACTATATCGTTGTAAGGGATCCATCATCCCCACATTCCaa > 1:95223/1‑150 (MQ=255) ccTGCTGCTGTACCCCATCGACCTGGTACGCGCCAGCGGCGTGGCGCGCAGCATGAACTTCGTCAGCAACATCGCGGCGCTGACGGTTTTCATCATTTCCGGGCAGGTGGACTATATCGTTGTAAGGGATCCATCATCCCCACATTCCaa > 1:838347/1‑150 (MQ=255) ccTGCTGCTGTACCCCATCGACCTGGTACGCGCCAGCGGCGTGGCGCGCAGCATGAACTTCGTCAGCAACATCGCGGCGCTGACGGTTTTCATCATTTCCGGGCAGGTGGACTATATCGTTGTAAGGGATCCATCATCCCCACATTCCaa > 1:409957/1‑150 (MQ=255) tgctgTACCCCATCGACCTGGTACGCGCCAGCGGCGTGGCGCGCAGCATGAACTTCGTCAGCAACATCGCGGCGCTGACGGTTTTCATCATTTCCGGGCAGGTGGACTATATCGTTGTAAGGGATCcatcat < 1:613457/132‑1 (MQ=255) tgctgTACCCCATCGACCTGGTACGCGCCAGCGGCGTGGCGCGCAGCATGAACTTCGTCAGCAACATCGCGGCGCTGACGGTTTTCATCATTTCCGGGCAGGTGGACTATATCGTTGTAAGGGATCcatcat > 2:613457/1‑132 (MQ=255) gTACCCCATCGACCTGGTACGCGCCAGCGGCGTGGCGCGCAGCATGAACTTCGTCAGCAACATCGCGGCGCTGACGGTTTTCATCATTTCCGGGCAGGTGGACTATATCGTTGTAAGGGATCCATCATCCCCACATTCCAACCGTCCAcc > 1:258658/1‑150 (MQ=255) tACCCCATCGACCTGGTACGCGCCAGCGGCGTGGCGCGCAGCATGAACTTCGTCAGCAACATCGCGGCGCTGACGGTTTTCATCATTTCCGGGCAGGTGGACTATATCGTTGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCt > 2:599998/1‑150 (MQ=255) aTCGACCTGGTACGCGCCAGCGGCGTGGCGCGCAGCATGAACTTCGTCAGCAACATCGCGGCGCTGACGGTTTTCATCATTTCCGGGCAGGCGGACTATATCGTTGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACTTGCTTca > 2:180990/1‑149 (MQ=255) gACCTGGTACGCGCCAGCGGCGTGGCGCGCAGCATGAACTTCGTCAGCAACATCGCGGCGCTGACGGTTTTCATCATTTCCGGGCAGGTGGACTATATCGTTGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGa < 2:892647/150‑1 (MQ=255) tgcgcgCCAGCGGCGTGGCGCGCAGCATGAACTTCGTCAGCAACATCGCGGCGCTGACGGTTTTCATCATTTCCGGGCAGGTGGACTATATCGTTGTAAGGGATCCATCATCCCca > 1:69714/3‑116 (MQ=255) tgcgcgCCAGCGGCGTGGCGCGCAGCATGAACTTCGTCAGCAACATCGCGGCGCTGACGGTTTTCATCATTTCCGGGCAGGTGGACTATATCGTTGTAAGGGATCCATCATCCCca < 2:69714/114‑1 (MQ=255) cccATCGGCGTGCCGCGCAGCATTAACTTCGCCAGTAACATCGCGGCTCTGACGGTTTTCATCATTTCCGGGCAGGTTGACTATATCGTTGTAACGGATCCAGCATGCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTccc < 1:459741/149‑1 (MQ=25) tGGCGCGCAGCATGAACTTCGTCAGCAACATCGCGGCGCTGACGGTTTTCATCATTTCCGGGCAGGTGGACTATATCGTTGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGAtttctttc < 1:971260/150‑1 (MQ=255) ggCGCGCAGCATGAACTTCGTCAGCAACATCGCGGCGCTGACGGTTTTCATCATTTCCGGTCAGGTGGACTATATCGTTGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATttctttct < 2:387315/150‑1 (MQ=255) ggCGCGCAGCATGAACTTCGTCAGCAACATCGCGGCGCTGACGGTTTTCATCATTTCCGGGCAGGTGGACTATATCGTTGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATttctttct < 1:599998/150‑1 (MQ=255) gcgcAGCATGAACTTCGTCAGCAACATCGCGGCGCTGACGGTTTTCATCATTTCCGGGCAGGTGGACTATATCGTTGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGa > 2:153740/1‑150 (MQ=255) aTGAACTTCGTCAGCAACATCGCGGCGCTGACGGTTTTCATCATTTCCGGGCAGGTGGACTATATCGTTGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGa < 2:370610/131‑1 (MQ=255) aTGAACTTCGTCAGCAACATCGCGGCGCTGACGGTTTTCATCATTTCCGGGCAGGTGGACTATATCGTTGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGa > 1:370610/1‑131 (MQ=255) gAACTTCGTCAGCAACATCGCGGCGCTGACGGTTTTCATCATTTCCGGGCAGGTGGACTATATCGTTGTAAGGGa < 2:972665/75‑1 (MQ=255) gAACTTCGTCAGCAACATCGCGGCGCTGACGGTTTTCATCATTTCCGGGCAGGTGGACTATATCGTTGTAAGGGa > 1:972665/1‑75 (MQ=255) aCTTCGTCAGCAACATCGCGGCGCTGACGGTTTTCATCATTTCCGGGCAGGGGGACTATATCGTTGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGcc > 1:345369/1‑150 (MQ=255) gTCAGCAACATCGCGGCGCTGACGGTTTTCATCATTTCCGGGCAGGTGGACTATATCGTTGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCatgat > 1:235620/1‑150 (MQ=255) aGCAACATCGCGGCGCTGACGGTTTTCATCATTTCCGGGCAGGTGGACTATATCGTTGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATgcg > 2:668587/1‑150 (MQ=255) gCAACATCGCGGCGCTGACGGTTTTCATCATTTCCGGGCAGGTGGACTATATCGTTGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATgcgc > 1:766119/1‑150 (MQ=255) aTCGCGGCGCTGACGGTTTTCATCATTTCCGGGCAGGTGGACTATATCGTTGTAAGGGATCCATCATCCCCACATTCCACCCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGa < 1:954738/150‑1 (MQ=255) cgcgGCGCTGACGGTTTTCATCATTTCCGGGCAGGTGGACTATATCGTTGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACa < 2:235620/150‑1 (MQ=255) cgcTGACGGTTTTCATCATTTCCGGGCAGGTGGACTATATCGTTGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCaaa < 2:258658/150‑1 (MQ=255) tttCATCATTTCCGGGCAGGTGGACTATATCGTTGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTg < 1:785795/106‑1 (MQ=255) tttCATCATTTCCGGGCAGGTGGACTATATCGTTGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTg > 2:785795/1‑106 (MQ=255) catcatTTCCGGGCAGGTGGACTATATCGTTGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAAGtct > 2:157365/1‑150 (MQ=255) catcatTTCCGGGCAGGTGGACTATATCGTTGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAAGtct > 1:185087/1‑150 (MQ=255) atcatTTCCGGGCAGGTGGACTATATCGTTGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAAGtcta < 1:180990/150‑1 (MQ=255) tcatTTCCGGGCAGGTGGACTATATCGTTGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAAGtctac < 2:185087/150‑1 (MQ=255) atTTCCGGGCAGGTGGACTATATCGTTGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAAGtctacct < 2:95223/150‑1 (MQ=255) ccGGGCAGGTGGACTATATCGTTGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAAGtctacctctac < 2:728434/150‑1 (MQ=255) gACTATATCGTTGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAAGTCTACCTCTACCCCAAGCCCGt < 2:766119/150‑1 (MQ=38) aCTATATCGTTGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAAGTCTACCTCTACCCCAAGCCCGTg < 2:136067/150‑1 (MQ=38) cGTTGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAAGTCTACCTCTACCCCAAGCCCGTGGACTTTc < 2:838347/150‑1 (MQ=32) | GGGCGTTCTGGACGGTCAGTACCCTGCTGCTGTACCCCATCGACCTGGTACGCGCCAGCGGCGTGGCGCGCAGCATGAACTTCGTCAGCAACATCGCGGCGCTGACGGTTTTCATCATTTCCGGGCAGGTGGACTATATCGTTGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAAGTCTACCTCTACCCCAAGCCCGTGGACTTTC > NC_002947/4536104‑4536392 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |