New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5333257	25 (1.130)	3 (0.150)	3/226	NT	10.7%	intergenic (+41/‑202)	gluQ/PP_5704	glutamyl‑Q tRNA(Asp) synthetase/hypothetical protein
	?	NC_002947	= 5333287	28 (1.440)					intergenic (+71/‑172)	gluQ/PP_5704	glutamyl‑Q tRNA(Asp) synthetase/hypothetical protein

ACAGACCCGGAACTGCTGTTGGCGACGCCGGCAGAGGTGCTGGCAGTCGCGCGCGCGCAATGGCGGCCGGAAGCGATCGCGCAGCGGACCACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5333100‑5333257 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgctcccacaggTAGCCCACAGGCCTTGAAGGCGGCGTGGTTCCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGTAAAGGTTCAGCGCAAATCAGCCTCTGGCACCGTGGTCCGCTGCGCGATCGCTTCCGGCCGCCATTGCGCGCGCGCGACTGCCA  <  NC_002947/5333287‑5333140                                                                                                                                                                                                                                                                                                                    ACAGACCCGGAACTGCTGTTGGCGACGCCGGCAGAGGTGCTGGCAGTCGCGCGCGCGCAATGGCGGCCGGAAGCGATCGCGCAGCGGACCACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCT                                                                                                                                                              >  1:187756/1‑150   AGACCCGGAACTGCTGTTGGCGACGCCGGCAGAGGTGCTGGCAGTCGCGCGCGCGCAATGGCGGCCGGAAGGGATCGCGCAGCGGACCACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCCGGCGCGCCCGCTCC                                                                                                                                                            >  1:537993/1‑150    GACCCGGAACTGCTGTTGGCGACGCCGGCAGAGGTGCTGGCAGTCGCGCGCGCGCAATGGCGGCCGGAAGCGATCGCGCAGCGGACCACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCC                                                                                                                                                           >  2:157488/1‑150     ACCCGGACCTGCTGTTCGCGACGCCAACAGAGGGGCTGGCAGTCGCGCGCGCGCAATGGCGGCCACAGATCAGCGCGCAGCGGACCACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCA                                                                                                                                                          <  1:405621/150‑1      CCCGGAACTGCTGTTGGCGACGCCGGCAGAGGTGCTGGCAGTCGCGCGCGCGCAATGGCGGCCGGAAGCGATCGCGCAGCGGACCACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCAC                                                                                                                                                         <  2:84507/150‑1                                              GTCGCGCGCGCGCAATGGCGGCCGGAAGCGATCGCGCAGCGGACCACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGTAGCCCACAGGCCTTGAAGGCGGCGTGGTTCCTGTGG                                                                                                                 <  2:547680/150‑1                                                                            ATCGCGCAGCGGACCACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGTAGCCCACAGGCCTTGAAGGCGGCGTGGTTCCTG                                                                                                                    >  1:433853/1‑117                                                                            ATCGCGCAGCGGACCACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGTAGCCCACAGGCCTTGAAGGCGGCGTGGTTCCTG                                                                                                                    <  2:433853/117‑1                                                                                                                                                        CCACAGGTAGCCCACAGGCCTTGAAGGCGGCGTGGTTCCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGTAAAGGTTCAGCGCAAATCAGCCTCTGGCACCGTGGTCCGCTGCGCGATCGCTTCCGGCCGCCATTGCGCGCGCGCGAC       >  1:157488/1‑150                                                                                                                                                        CCACAGGTAGCCCACAGGCCTTGAAGGCGGCGTGGTTCCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGTAAAGGTTCAGCGCAAATCAGCCTCTGGCACCGTGGTACGCTGCGCGATCGCTTCCGGCCGCCATTGCGCGCGCGCGAC       >  2:200582/1‑150                                                                                                                                                        CCACAGGTAGCCCACAGGCCTTGAAGGCGGCGTGG                                                                                                                          <  1:233061/35‑1                                                                                                                                                        CCACAGGTAGCCCACAGGCCTTGAAGGCGGCGTGG                                                                                                                          >  2:233061/1‑35                                                                                                                                                         CACAGGTAGCCCACAGGCCTTGAAGGCGGCGTGGTTCCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGTAAAGGTTCAGCGCAAATCAGCCTCTGGCACCGTGGTCCGCTGCGCGATC                                    <  2:95910/120‑1                                                                                                                                                         CACAGGTAGCCCACAGGCCTTGAAGGCGGCGTGGTTCCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGTAAAGGTTCAGCGCAAATCAGCCTCTGGCACCGTGGTCCGCTGCGCGATC                                    >  1:95910/1‑120                                                                                                                                                             GGTAGCCCACAGGCCTTGAAGGCGGCGTGGTTCCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGTAAAGGTTCAGCGCAAATCAGCCTCTGGCACCGTGGTCCGCTGCGCGATCGCTTCCGGCCGCCATTGCGCGCGCGCGACTGCCA  >  1:477004/1‑150                                                                                                                                                              GTAGCCCACAGGCCTTGAAGGGGGCGTGGTTCCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGTAAAGGTTCAGCGCAAATCAGCCTCTGGCACCGTGGTCCGCTGCGCGATCGCTTCCGGCCGCCATTGCGCGCGCGC          <  1:115449/141‑1                                                                                                                                                              GTAGCCCACAGGCCTTGAAGGCGGCGTGGTTCCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGTAAAGGTTCAGCGCAAATCAGCCTCTGGCACCGTGGTCCGCTGCGCGATCGCTTCCGGCCGCCATTGCGCGCGCGC          >  2:115449/1‑141                                                                                                                                                                                                                                                                                                                    ACAGACCCGGAACTGCTGTTGGCGACGCCGGCAGAGGTGCTGGCAGTCGCGCGCGCGCAATGGCGGCCGGAAGCGATCGCGCAGCGGACCACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5333100‑5333257 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgctcccacaggTAGCCCACAGGCCTTGAAGGCGGCGTGGTTCCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGTAAAGGTTCAGCGCAAATCAGCCTCTGGCACCGTGGTCCGCTGCGCGATCGCTTCCGGCCGCCATTGCGCGCGCGCGACTGCCA  <  NC_002947/5333287‑5333140

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.