New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5333257	25 (1.130)	3 (0.150)	3/226	NT	10.7%	intergenic (+41/‑202)	gluQ/PP_5704	glutamyl‑Q tRNA(Asp) synthetase/hypothetical protein
	?	NC_002947	= 5333287	28 (1.440)					intergenic (+71/‑172)	gluQ/PP_5704	glutamyl‑Q tRNA(Asp) synthetase/hypothetical protein

TGGCAGTCGCGCGCGCGCAATGGCGGCCGGAAGCGATCGCGCAGCGGACCACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAATTCAAACCCTTGGCGAACGCTGTGGATTCCCGCTAGCATCCCCCCTGCCATTTGCGCCAATAATAAG  >  NC_002947/5333140‑5333424                                                                                                                                                    |                                                                                                                                          tGGCAGTCGCGCGCGCGCAATGGCGGCCGGAAGCGATCGCGCAGCGGACCACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTAcc                                                                                                                                         >  1:477004‑M2/1‑148 (MQ=255)      gTCGCGCGCGCGCAATGGCGGCCGGAAGCGATCGCGCAGCGTACCACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTAcctgtgg                                                                                                                                    >  2:200582‑M2/1‑143 (MQ=255)      gTCGCGCGCGCGCAATGGCGGCCGGAAGCGATCGCGCAGCGGACCACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTAcctgtgg                                                                                                                                    >  1:157488‑M2/1‑143 (MQ=255)         gcgcgcgcgcAATGGCGGCCGGAAGCGATCGCGCAGCGGACCACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTAc                                                                                                                                          >  2:115449‑M2/1‑140 (MQ=255)         gcgcgcgcgcAATGGCGGCCGGAAGCGATCGCGCAGCGGACCACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCCCCTTCAAGGCCTGTGGGCTAc                                                                                                                                          <  1:115449‑M2/141‑2 (MQ=255)                   aaTGGCGGCCGGAAGCGATCGCGCAGCGGACCACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGcc                                                                                                                       <  1:347522/150‑1 (MQ=255)                             ggAAGCGATCGCGCAGCGGACCACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAggg                                                                                                             >  1:176778/1‑150 (MQ=255)                             ggAAGCGATCGCGCAGCGGACCACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAggg                                                                                                             >  1:498146/1‑150 (MQ=255)                                 gCGATCGCGCAGCGGACCACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCgg                                                                                                         <  1:362995/150‑1 (MQ=255)                                   gATCGCGCAGCGGACCACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTAcctgtg                                                                                                                                     <  2:95910‑M2/120‑7 (MQ=255)                                   gATCGCGCAGCGGACCACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTAcctgtg                                                                                                                                     >  1:95910‑M2/1‑114 (MQ=255)                                      cgcgCAGCGGACCACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGCACAg                                                                                                    <  1:455045/150‑1 (MQ=255)                                         gcAGCGGACCACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCAGGCATGCCCGCGAAAGGGCCGGCACAGGTa                                                                                                 >  2:188555/1‑150 (MQ=255)                                            gcccaCCACGGTGCCCGAGGCTGCTTTCCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGCACAGGTAccc                                                                                              <  1:223392/146‑1 (MQ=255)                                               gACCACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCTCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGCACAGGTAcccccc                                                                                           <  1:238799/150‑1 (MQ=255)                                                          cAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCCTACCCGCGAAAGGGCCGGCACAGGTACCCCCCCTAAAAACaaa                                                                                >  1:289592/1‑150 (MQ=255)                                                           agagGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGCACAGGTACCCCCCCTAAAAACaaaa                                                                               <  2:128085/150‑1 (MQ=255)                                                           agagGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCACCCACAGGAACCACGCCGCCTTCAAGGCCGGTGGGCTACCTGTGGGAGCGGGCATGCACGCGAAAGGGCCGGCACAGGTACCCCCCCTAAAAACaaaa                                                                               <  2:174324/150‑1 (MQ=255)                                                               gCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGCACAGGTACCCCCCCTAAAAACAAAAGccc                                                                           >  1:324437/1‑150 (MQ=255)                                                                cTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGACCCACGCCGCATTCAAGGCCTGTGGGCTACCTGGGGGAGCGGGCATGCCCGCGAAAGGGCCGGCACAGGTACCCCCCCTAAAAACAAAAGCCCa                                                                          <  2:331109/150‑1 (MQ=255)                                                                     ttGCGCTGAACCTTTCCCGGCCTCTTAGGCTGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGCACAGGTACCCCCCCTCAAAACAAAAGCCCAGTaaa                                                                     <  1:284519/150‑1 (MQ=38)                                                                          cTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAATTCaa                                                                <  2:176778/150‑1 (MQ=255)                                                                          cTGAACCTTTACCGGCCTCTTAGCGGGCGCGCCCGCTTCCAAAGGAACCACGCCGCCTTCAAGGGCTGTGGGCTACCTGTGGGAGCGGGCATGCCAGCGAAAGGGCCGGCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAATTCaa                                                                <  2:498146/150‑1 (MQ=39)                                                                               ccTTTTCCGGCCTCTTCGCCGGAGCGCCCTCTCCCACATCACCCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAATTCAAACCCt                                                           <  1:428975/150‑1 (MQ=39)                                                                                  ttACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAAACACGCCGCCTTCAAGGCCTGTGAGCTACCTGTGGGAGCGGGCATGCACGCGAAAGGGCCGGCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAATTCAAACCCTTgg                                                        <  2:537993/150‑1 (MQ=255)                                                                                     ccGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAATTCAAAccc                                                            >  1:161014/1‑143 (MQ=255)                                                                                     ccGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAATTCAAAccc                                                            <  2:161014/143‑1 (MQ=255)                                                                                        gCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAATTCAAACCCTTGGCGAACg                                                  >  1:564403/1‑150 (MQ=255)                                                                                           tctTCGCGGGCGCGCCCGATCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGGTACCTGTGGGAGCGGACATGCCCGGGAAAGGGCCGGCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAATTCAAACCCTTGGCGAACGCtg                                               <  2:334876/150‑1 (MQ=255)                                                                                                        ccccGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAATTCAAACCCTTGGCGAACGCTGTGGATTCCCGCTa                                  <  2:169474/149‑1 (MQ=255)                                                                                                                ccACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTAcctgtgggagcgggcgcgcccgcgaagaggccggtaaaggttcagcgcaaatcagcctctggcaccgtggtccgctgcgcgatcgcttccggccgccattgcgcgcgcgcgac                          <  2:547680‑M2/150‑114 (MQ=255)                                                                                                                  acaGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAATTCAAACCCTTGGCGAACGCTGTGGATTCCCGCTAGCATcccccc                        >  2:125856/1‑150 (MQ=255)                                                                                                                   caGGAACCACGCCGCCTTCAAGGCCTGTGGGCTAcctgtgggagcgggcgcgcccgcgaagaggccggtaaaggttcagcgcaaatcagcctctggcaccgtggtccgctgcgcgat                                                        >  1:433853‑M2/1‑34 (MQ=255)                                                                                                                   caGGAACCACGCCGCCTTCAAGGCCTGTGGGCTAcctgtgggagcgggcgcgcccgcgaagaggccggtaaaggttcagcgcaaatcagcctctggcaccgtggtccgctgcgcgat                                                        <  2:433853‑M2/117‑84 (MQ=255)                                                                                                                   caGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAATTCAAACCCTTGGCGAACGCTGTGGATTCCCGCTAGCATCCCCCCt                       <  1:384114/150‑1 (MQ=255)                                                                                                                   caGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAATTCAAACCCTTGGCGAACGCTGTGGATTCCCGCTAGCATCCCCCCt                       <  1:188555/150‑1 (MQ=255)                                                                                                                         ccACGCCGCCTTCAAGGCCTGTGGGCTAcctgtgg                                                                                                                                    >  2:233061‑M2/1‑28 (MQ=255)                                                                                                                         ccACGCCGCCTTCAAGGCCTGTGGGCTAcctgtgg                                                                                                                                    <  1:233061‑M2/35‑8 (MQ=255)                                                                                                                         ccACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAATTCAAACCCTTGGCGAACGCTGTGGATTCCCGCTAGCATCCCCCCTGCCAtt                 <  2:324437/150‑1 (MQ=255)                                                                                                                           aCGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGACCGCGAAAGGGCCGGCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAATTCAAACCCTTGGCGAACGCTGTGGATTCCCGCTAGCATCCCCCCTGCCATTTg               >  2:242361/1‑150 (MQ=255)                                                                                                                                        ggCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAATTCAAACCCTTGGCGAACGCTGTGGATTCCCGCTAGCATCCCCCCTGCCATTTGCGCCAATAATAAg  <  1:125856/150‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                          TGGCAGTCGCGCGCGCGCAATGGCGGCCGGAAGCGATCGCGCAGCGGACCACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAATTCAAACCCTTGGCGAACGCTGTGGATTCCCGCTAGCATCCCCCCTGCCATTTGCGCCAATAATAAG  >  NC_002947/5333140‑5333424

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.