| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5333257 | 25 (1.130) | 3 (0.150) | 3/226 | NT | 10.7% | intergenic (+41/‑202) | gluQ/PP_5704 | glutamyl‑Q tRNA(Asp) synthetase/hypothetical protein |
| ? | NC_002947 | = 5333287 | 28 (1.440) | intergenic (+71/‑172) | gluQ/PP_5704 | glutamyl‑Q tRNA(Asp) synthetase/hypothetical protein | |||||
AACTGCTGTTGGCGACGCCGGCAGAGGTGCTGGCAGTCGCGCGCGCGCAATGGCGGCCGGAAGCGATCGCGCAGCGGACCACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAATTCAAACCCTTGGCGAACGCTGTGGATTCCCGCTAGCATCCCCCCTGC > NC_002947/5333110‑5333405 | aaCTGCTGTTGGCGACGCCGGCAGAGGTGCTGGCAGTCGCGCGCGCGCAATGGCGGCCGGAAGCGATCGCGCAGCGGACCACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCTCGGGCGCGCCCGCTCCCACAGGaa > 2:238799/1‑150 (MQ=255) aCTGCTGTTGGCGACGCCGGCAGAGGTGCTGGCAGTCGCGCGCGCGCAATGGCGGCCGGAAGCGATCGCGCAGCGGACCACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAAc < 2:187756/150‑1 (MQ=255) gctgTTAGCGACACCAGCCGAGGTGCTGGCAGTCGCGCGCGCGCAATGGCGGCCGGAAGCGATCGCGTAGCGGACCACGGTGCCAGATGCTGATTTGCGCTGAACCTTTATCGGCCTCTTCGCGTGCGCGTCGGCCCCCACAGGAACCAc < 2:40752/150‑1 (MQ=255) tgTTGGCGACGCCGGCAGAGGTGCTGGCAGTCGCGCGCGCGCAATGGCGGCCGGAAGCGATCGCGCAGCGGACCACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCAcgc > 1:128085/1‑150 (MQ=255) tGGCAGTCGCGCGCGCGCAATGGCGGCCGGAAGCGATCGCGCAGCGGACCACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTAcc > 1:477004‑M2/1‑148 (MQ=255) gTCGCGCGCGCGCAATGGCGGCCGGAAGCGATCGCGCAGCGTACCACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTAcctgtgg > 2:200582‑M2/1‑143 (MQ=255) gTCGCGCGCGCGCAATGGCGGCCGGAAGCGATCGCGCAGCGGACCACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGtagcccacaggccttgaaggcggcgtggttcctgtgg < 2:547680‑M1/150‑38 (MQ=255) gTCGCGCGCGCGCAATGGCGGCCGGAAGCGATCGCGCAGCGGACCACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTAcctgtgg > 1:157488‑M2/1‑143 (MQ=255) gcgcgcgcgcAATGGCGGCCGGAAGCGATCGCGCAGCGGACCACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTAc > 2:115449‑M2/1‑140 (MQ=255) gcgcgcgcgcAATGGCGGCCGGAAGCGATCGCGCAGCGGACCACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCCCCTTCAAGGCCTGTGGGCTAc < 1:115449‑M2/141‑2 (MQ=255) aaTGGCGGCCGGAAGCGATCGCGCAGCGGACCACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGcc < 1:347522/150‑1 (MQ=255) ggAAGCGATCGCGCAGCGGACCACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAggg > 1:176778/1‑150 (MQ=255) ggAAGCGATCGCGCAGCGGACCACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAggg > 1:498146/1‑150 (MQ=255) gCGATCGCGCAGCGGACCACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCgg < 1:362995/150‑1 (MQ=255) gATCGCGCAGCGGACCACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTAcctgtg < 2:95910‑M2/120‑7 (MQ=255) gATCGCGCAGCGGACCACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTAcctgtg > 1:95910‑M2/1‑114 (MQ=255) aTCGCGCAGCGGACCACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGtagcccacaggccttgaaggcggcgtggttcctg > 1:433853‑M1/1‑83 (MQ=255) aTCGCGCAGCGGACCACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGtagcccacaggccttgaaggcggcgtggttcctg < 2:433853‑M1/117‑35 (MQ=255) cgcgCAGCGGACCACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGCACAg < 1:455045/150‑1 (MQ=255) gcAGCGGACCACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCAGGCATGCCCGCGAAAGGGCCGGCACAGGTa > 2:188555/1‑150 (MQ=255) gcccaCCACGGTGCCCGAGGCTGCTTTCCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGCACAGGTAccc < 1:223392/146‑1 (MQ=255) gACCACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCTCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGCACAGGTAcccccc < 1:238799/150‑1 (MQ=255) cAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCCTACCCGCGAAAGGGCCGGCACAGGTACCCCCCCTAAAAACaaa > 1:289592/1‑150 (MQ=255) agagGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGCACAGGTACCCCCCCTAAAAACaaaa < 2:128085/150‑1 (MQ=255) agagGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCACCCACAGGAACCACGCCGCCTTCAAGGCCGGTGGGCTACCTGTGGGAGCGGGCATGCACGCGAAAGGGCCGGCACAGGTACCCCCCCTAAAAACaaaa < 2:174324/150‑1 (MQ=255) gCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGCACAGGTACCCCCCCTAAAAACAAAAGccc > 1:324437/1‑150 (MQ=255) cTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGACCCACGCCGCATTCAAGGCCTGTGGGCTACCTGGGGGAGCGGGCATGCCCGCGAAAGGGCCGGCACAGGTACCCCCCCTAAAAACAAAAGCCCa < 2:331109/150‑1 (MQ=255) ttGCGCTGAACCTTTCCCGGCCTCTTAGGCTGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGCACAGGTACCCCCCCTCAAAACAAAAGCCCAGTaaa < 1:284519/150‑1 (MQ=38) cTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAATTCaa < 2:176778/150‑1 (MQ=255) cTGAACCTTTACCGGCCTCTTAGCGGGCGCGCCCGCTTCCAAAGGAACCACGCCGCCTTCAAGGGCTGTGGGCTACCTGTGGGAGCGGGCATGCCAGCGAAAGGGCCGGCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAATTCaa < 2:498146/150‑1 (MQ=39) ccTTTTCCGGCCTCTTCGCCGGAGCGCCCTCTCCCACATCACCCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAATTCAAACCCt < 1:428975/150‑1 (MQ=39) ttACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAAACACGCCGCCTTCAAGGCCTGTGAGCTACCTGTGGGAGCGGGCATGCACGCGAAAGGGCCGGCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAATTCAAACCCTTgg < 2:537993/150‑1 (MQ=255) ccGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAATTCAAAccc > 1:161014/1‑143 (MQ=255) ccGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAATTCAAAccc < 2:161014/143‑1 (MQ=255) gCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAATTCAAACCCTTGGCGAACg > 1:564403/1‑150 (MQ=255) tctTCGCGGGCGCGCCCGATCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGGTACCTGTGGGAGCGGACATGCCCGGGAAAGGGCCGGCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAATTCAAACCCTTGGCGAACGCtg < 2:334876/150‑1 (MQ=255) ccccGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAATTCAAACCCTTGGCGAACGCTGTGGATTCCCGCTa < 2:169474/149‑1 (MQ=255) ccACAGGtagcccacaggccttgaaggcggcgtggttcctgtgggagcgggcgcgcccgcgaagaggccggtaaaggttcagcgcaaatcagcctctggcaccgtggtccgctgcgcgatcgcttccggccgccattgcgcgcgcgcgac > 1:157488‑M1/1‑7 (MQ=255) ccACAGGtagcccacaggccttgaaggcggcgtggttcctgtgggagcgggcgcgcccgcgaagaggccggtaaaggttcagcgcaaatcagcctctggcaccgtggtacgctgcgcgatcgcttccggccgccattgcgcgcgcgcgac > 2:200582‑M1/1‑7 (MQ=255) ccACAGGtagcccacaggccttgaaggcggcgtgg < 1:233061‑M1/35‑29 (MQ=255) ccACAGGtagcccacaggccttgaaggcggcgtgg > 2:233061‑M1/1‑7 (MQ=255) ccACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTAcctgtgggagcgggcgcgcccgcgaagaggccggtaaaggttcagcgcaaatcagcctctggcaccgtggtccgctgcgcgatcgcttccggccgccattgcgcgcgcgcgac < 2:547680‑M2/150‑114 (MQ=255) cacaGGtagcccacaggccttgaaggcggcgtggttcctgtgggagcgggcgcgcccgcgaagaggccggtaaaggttcagcgcaaatcagcctctggcaccgtggtccgctgcgcgatc > 1:95910‑M1/1‑6 (MQ=255) cacaGGtagcccacaggccttgaaggcggcgtggttcctgtgggagcgggcgcgcccgcgaagaggccggtaaaggttcagcgcaaatcagcctctggcaccgtggtccgctgcgcgatc < 2:95910‑M1/120‑115 (MQ=255) acaGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAATTCAAACCCTTGGCGAACGCTGTGGATTCCCGCTAGCATcccccc > 2:125856/1‑150 (MQ=255) caGGAACCACGCCGCCTTCAAGGCCTGTGGGCTAcctgtgggagcgggcgcgcccgcgaagaggccggtaaaggttcagcgcaaatcagcctctggcaccgtggtccgctgcgcgat > 1:433853‑M2/1‑34 (MQ=255) caGGAACCACGCCGCCTTCAAGGCCTGTGGGCTAcctgtgggagcgggcgcgcccgcgaagaggccggtaaaggttcagcgcaaatcagcctctggcaccgtggtccgctgcgcgat < 2:433853‑M2/117‑84 (MQ=255) caGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAATTCAAACCCTTGGCGAACGCTGTGGATTCCCGCTAGCATCCCCCCt < 1:188555/150‑1 (MQ=255) caGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAATTCAAACCCTTGGCGAACGCTGTGGATTCCCGCTAGCATCCCCCCt < 1:384114/150‑1 (MQ=255) ggtagcccacaggccttgaaggcggcgtggttcctgtgggagcgggcgcgcccgcgaagaggccggtaaaggttcagcgcaaatcagcctctggcaccgtggtccgctgcgcgatcgcttccggccgccattgcgcgcgcgcgactgcca > 1:477004‑M1/1‑2 (MQ=255) gtagcccacaggccttgaagggggcgtggttcctgtgggagcgggcgcgcccgcgaagaggccggtaaaggttcagcgcaaatcagcctctggcaccgtggtccgctgcgcgatcgcttccggccgccattgcgcgcgcgc < 1:115449‑M1/141‑141 (MQ=255) gtagcccacaggccttgaaggcggcgtggttcctgtgggagcgggcgcgcccgcgaagaggccggtaaaggttcagcgcaaatcagcctctggcaccgtggtccgctgcgcgatcgcttccggccgccattgcgcgcgcgc > 2:115449‑M1/1‑1 (MQ=255) | AACTGCTGTTGGCGACGCCGGCAGAGGTGCTGGCAGTCGCGCGCGCGCAATGGCGGCCGGAAGCGATCGCGCAGCGGACCACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAATTCAAACCCTTGGCGAACGCTGTGGATTCCCGCTAGCATCCCCCCTGC > NC_002947/5333110‑5333405 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |