| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3110959 | 31 (0.790) | 9 (0.260) | 9/232 | 2.8 | 26.1% | intergenic (+17/+40) | PP_2724/pfpI | hypothetical protein/protease PfpI |
| ? | NC_002947 | = 3110969 | 24 (0.700) | intergenic (+27/+30) | PP_2724/pfpI | hypothetical protein/protease PfpI | |||||
CCTATGACGAGTCGCCGCTGTTCTGCGAGGCTGAAACCTCTCAGGCGGGGCACCGCAAATCGCTGCTGTTTTCCTTGCGCACGCCCTGGATTTTCCTGTGCTTCTGGGTGTTGCTGGGCAGTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3110794‑3110959‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcagtgcgtgctggtcgCCCATGATGCCGACCAGCACGCACTGATCACGCCAGCTGGATGAAAACCGAATAACTGCCCAGCAACACCCAGAAGCACAGGAAAATCCAGGGCGTGCGCAAGGAAAACAGCAGCGATTTGCGGTGCCCCGCCTGAGAGGTTTCAG < NC_002947/3110969‑3110824 CCTATGACGAGTCGCCGCTGTTCTGCGAGGCTGAAACCTCTCAGGCGGGGCACCGCAAATCGCTGCTGTTTTCCTTGCGCACGCCCTGGATTTTCCTGTGCTTCTGGGTGTTGCTGGGCAGTTATTCGGTTTTCATCCAGCTGGCGTGAT < 2:425958/150‑1 CTATGACGAGTCGCCGCTGTTCTGCGAGGCTGAAACCTCTCAGGCGGGGCACCGCAAATCGCTGCTGTTTTCCTTGCGCACGCCCTGGATTTTCCTGTGCTTCTGGGTGTTGCTGGGCAGTTATTCGGTTTTCATCCAGCTGGCGTGATC > 2:26989/1‑150 GACGAGTCGCCGCTGTTCTGCGAGGCTGAAACCTCTCAGGCGGGGCACCGCAAATCGCTGCTGTTTTCCTTGCGCACGCCCTGGATTTTCCTGTGCTTCTGGGTGTTGCTGGGCAGTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTG > 2:724024/1‑150 CCGCTGTTCTGCGAGGCTGAAACCTCTCAGGCGGGGCACCGCAAATCGCTGCTGTTTTCCTTGCGCACGCCCTGGATTTTCCTGTGCTTCTGGGTGTTGCTGGGCAGTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGT > 1:823449/1‑150 AACCTCTCAGGCGGGGCACCGCAAATCGCTGCTGTTTTCCTTGCGCACGCCCTGGATTTTCCTGTGCTTCTGGGTGTTTCTGGGCAGTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGCCCATGATGCCGACCAGC < 2:637606/150‑1 ACCTCTCAGGCGGGGCACCGCAAATCGCTGCTGTTTTCCTTGCGCACGCCCTGGATTTTCCTGTGCTTCTGGGTGTTGCTGGGCAGTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGCCCATGATG < 2:863797/140‑1 ACCTCTCAGGCGGGGCACCGCAAATCGCTGCTGTTTTCCTTGCGCACGCCCTGGATTTTCCTGTGCTTCTGGGTGTTGCTGGGCAGTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGCCCATGATG > 1:863797/1‑140 AGGCGGGGCACCGCAAATCGCTGCTGTTTTCCTTGCGCACGCCCTGGATTTTCCTGTGCTTCTGGGTGTTGCTGGGCAGTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGCCCATGATGCCGA > 2:74697/1‑137 AGGCGGGGCACCGCAAATCGCTGCTGTTTTCCTTGCGCACGCCCTGGATTTTCCTGTGCTTCTGGGTGTTGCTGGGCAGTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGCCCATGATGCCGA < 1:74697/137‑1 CTGTGCTTCTGGGTGTTGCTGGGCAGTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTC < 1:382425/70‑1 CTGTGCTTCTGGGTGTTGCTGGGCAGTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTC > 2:382425/1‑70 GTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGCCCATGATGCCGAC < 2:857379/60‑1 GTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGCCCATGATGCCGAC > 1:857379/1‑60 TTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGCCCATGATGCCGACCA > 1:156780/1‑58 TTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGCCCATGATGCCGACCA < 2:156780/58‑1 GCGTGCTGGTCGCCCATGATGCCGACCAGCACGCACTGATCACGCCAGCTGGATGAAAACCGAATAACTGCCCAGCAACACCCAGAAGCACAGGAAAATCCAGGGCGTGCGCAAGGAAAACAGCAGCGATTTGCGGTGCCCCGCCTGAGA < 1:433300/150‑1 TGCTGGTCGCCCATGATGCCGACCAGCACGCACTGATCACGCCAGCTGGATGAAAACCGAATAACTGCCCAGCAACACCCAGAAGCACAGGAAAATCCAGGGCGTGCGCAAGGAAAACAGCAGCGATTTGCGGTGCCCCGCCTGAGAGGT > 1:724024/1‑150 TGCTGGTCGCCCATGATGCCGACCAGCACGCACTGATCACGCCAGCTGGATGAAAACCGAATAACTGCCCAGCAACACCCAGAAGCACAGGAAAATCCAGGGCGTGCGCAAGGAAAACAGCAGCGATTTGCGGTGCCCCGCCTGAGAGGT < 2:954239/150‑1 GCTGGTCGCCCATGATGCCGACCAGCACGCACTGATCACGCCAGCTGGATGAAAACCGAATAACTGCCCAGCAACACCCAGAAGCACAGGAAAATCCAGGGCGTGCGCAAGGAAAACAGCAGCGATTTGCGGTGCCCCGCCTGAGAGGTT < 1:684644/150‑1 CTGGTCGCCCATGATGCCGACCAGCACGCACTGATCACGCCAGCTGGATGAAAACCGAATAACTGCCCAGCAACACCCAGAAGCACAGGAAAATCCAGGGCGTGCGCAAGGAAAACAGCAGCGATTTGCGGTGCCCCGCCTGAGAGGTTT < 1:407250/150‑1 TGGTCGCCCATGATGCCGACCAGCACGCACTGATCACGCCAGCTGGATGAAAACCGAATAA > 2:123331/1‑61 TGGTCGCCCATGATGCCGACCAGCACGCACTGATCACGCCAGCTGGATGAAAACCGAATAA < 1:123331/61‑1 GTCGCCCATGATGCCGACCAGCACGCACTGATCACGCCAGCTGGATGAAAACCGAATAACTGCCCAGCAACACCCAGAAGCACAGGAAAATCCAGGGCGTGCGCAAGGAAAACAGCAGCGATTTGCGGTGCCCCGCCTGAGAGGTTTCAG > 1:26989/1‑150 CCTATGACGAGTCGCCGCTGTTCTGCGAGGCTGAAACCTCTCAGGCGGGGCACCGCAAATCGCTGCTGTTTTCCTTGCGCACGCCCTGGATTTTCCTGTGCTTCTGGGTGTTGCTGGGCAGTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3110794‑3110959‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcagtgcgtgctggtcgCCCATGATGCCGACCAGCACGCACTGATCACGCCAGCTGGATGAAAACCGAATAACTGCCCAGCAACACCCAGAAGCACAGGAAAATCCAGGGCGTGCGCAAGGAAAACAGCAGCGATTTGCGGTGCCCCGCCTGAGAGGTTTCAG < NC_002947/3110969‑3110824 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |