| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3110959 | 31 (0.790) | 9 (0.260) | 9/232 | 2.8 | 26.1% | intergenic (+17/+40) | PP_2724/pfpI | hypothetical protein/protease PfpI |
| ? | NC_002947 | = 3110969 | 24 (0.700) | intergenic (+27/+30) | PP_2724/pfpI | hypothetical protein/protease PfpI | |||||
TGCGAGGCTGAAACCTCTCAGGCGGGGCACCGCAAATCGCTGCTGTTTTCCTTGCGCACGCCCTGGATTTTCCTGTGCTTCTGGGTGTTGCTGGGCAGTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGGCATCATGGGCGACCAGCACGCACTGAGCAGTAGCAGGTTCAGTCTGCCAGTGCCTTGATCAACTGCTCATTGAAGGCGGGGATATCGTCCGGCTGGCGGCTGGTGATGAGGTTGCCATCGACCACCACTTGTTCATCCACCCACGTA > NC_002947/3110817‑3111107 | tGCGAGGCTGAAACCTCTCAGGCGGGGCACCGCAAATCGCTGCTGTTTTCCTTGCGCACGCCCTGGATTTTCCTGTGCTTCTGGGTGTTGCTGGGCAGTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGGcatcat > 2:78477/1‑150 (MQ=255) gCGAGGCTGAAACCTCTCAGGCGGGGCACCGCAAATCGCTGCTGTTTTCCTTGCGCACGCCCTGGATTTTCCTGTGCTTCTGGGTGTTGCTGGGCAGTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGGCATCATg < 2:823449/150‑1 (MQ=255) cGAGGCTGAAACCTCTCAGGCGGGGCACCGCAAATCGCTGCTGTTTTCCTCGCGCACGCCCTGGATTTTCCTGTGCTTCTGGGTGTTGCTGGGCAGTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGGCATCATgg < 1:308930/150‑1 (MQ=255) cTGAAACCTCTCAGGCGGGGCACCGCAAATCGCTGCTGTTTTCCTTGCGCACGCCCTGGATTTTCCTGTGCTTCTGGGTGTTGCTGGGCAGTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGGCATCATGGGcgac > 1:26989‑M2/1‑146 (MQ=255) aaaCCTCTCAGGCGGGGCACCGCAAATCGCTGCTGTTTTCCTTGCGCACGCCCTGGATTTTCCTGTGCTTCTGGGTGTTGCTGGGCAGTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGGCATCATGGGcgaccag < 1:407250‑M2/150‑8 (MQ=255) aaCCTCTCAGGCGGGGCACCGCAAATCGCTGCTGTTTTCCTTGCGCACGCCCTGGATTTTCCTGTGCTTCTGGGTGTTTCTGGGCAGTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGcccatgatgccgaccagc < 2:637606‑M1/150‑19 (MQ=255) aaCCTCTCAGGCGGGGCACCGCAAATCGCTGCTGTTTTCCTTGCGCACGCCCTGGATTTTCCTGTGCTTCTGGGTGTTGCTGGGCAGTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGGCATCATGGGcgaccagc < 1:684644‑M2/150‑9 (MQ=255) aCCTCTCAGGCGGGGCACCGCAAATCGCTGCTGTTTTCCTTGCGCACGCCCTGGATTTTCCTGTGCTTCTGGGTGTTGCTGGGCAGTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGcccatgatg < 2:863797‑M1/140‑10 (MQ=255) aCCTCTCAGGCGGGGCACCGCAAATCGCTGCTGTTTTCCTTGCGCACGCCCTGGATTTTCCTGTGCTTCTGGGTGTTGCTGGGCAGTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGcccatgatg > 1:863797‑M1/1‑131 (MQ=255) aCCTCTCAGGCGGGGCACCGCAAATCGCTGCTGTTTTCCTTGCGCACGCCCTGGATTTTCCTGTGCTTCTGGGTGTTGCTGGGCAGTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGGCATCATGGGcgaccagca < 2:954239‑M2/150‑10 (MQ=255) aCCTCTCAGGCGGGGCACCGCAAATCGCTGCTGTTTTCCTTGCGCACGCCCTGGATTTTCCTGTGCTTCTGGGTGTTGCTGGGCAGTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGGCATCATGGGcgaccagca > 1:724024‑M2/1‑141 (MQ=255) tctcAGGCGGGGCACCGCAAATCGCTGCTGTTTTCCTTGCGCACGCCCTGGATTTTCCTGTGCTTCTGGGTGTTGCTGGGCAGTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGGCATCATGGGcgaccagcacgc < 1:433300‑M2/150‑13 (MQ=255) tcAGGCGGGGCACCGCAAATCGCTGCTGTTTTCCTTGCGCACGCCCTGGATTTTCCTGTGCTTCTGGGTGTTGCTGGGCAGTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGGCATCATgg < 1:465194/135‑1 (MQ=255) tcAGGCGGGGCACCGCAAATCGCTGCTGTTTTCCTTGCGCACGCCCTGGATTTTCCTGTGCTTCTGGGTGTTGCTGGGCAGTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGGCATCATgg > 2:465194/1‑135 (MQ=255) aGGCGGGGCACCGCAAATCGCTGCTGTTTTCCTTGCGCACGCCCTGGATTTTCCTGTGCTTCTGGGTGTTGCTGGGCAGTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGcccatgatgccga > 2:74697‑M1/1‑124 (MQ=255) aGGCGGGGCACCGCAAATCGCTGCTGTTTTCCTTGCGCACGCCCTGGATTTTCCTGTGCTTCTGGGTGTTGCTGGGCAGTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGcccatgatgccga < 1:74697‑M1/137‑14 (MQ=255) ccGCAAATCGCTGCTGTTTTCCTTGCGCACGCCCTGGATTTTCCTGTGCTTCTGGGTGTTGCTGGGCAGTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGGCATCATGGGCGACCAGCACGCACTGAGCAGTAGCa > 2:306489/1‑150 (MQ=255) cGCAAATCGCTGCTGTTTTCCTTGCGCACGCCCTGGATTTTCCTGTGCTTCTGGGTGTTGCTGGGCAGTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGGCATCATggg < 1:634428/123‑1 (MQ=255) cGCAAATCGCTGCTGTTTTCCTTGCGCACGCCCTGGATTTTCCTGTGCTTCTGGGTGTTGCTGGGCAGTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGGCATCATggg > 2:634428/1‑123 (MQ=255) aTCGCTGCTGTTTTCCTTGCGCACGCCCTGGATTTTCCTGTGCTTCTGGGTGTTGCTGGGCAGTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGGCATCATGGGCGACCAGCACGCACTGAGCAGTa > 2:377658/1‑141 (MQ=255) aTCGCTGCTGTTTTCCTTGCGCACGCCCTGGATTTTCCTGTGCTTCTGGGTGTTGCTGGGCAGTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGGCATCATGGGCGACCAGCACGCACTGAGCAGTa < 1:377658/141‑1 (MQ=255) tCCTTGCGCACGCCGTGGATTTTCCTGTGCTTCTGGGTGTTGCTGGGCAGTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGGCATCATGGGCGACCAGCACGCACTGAGCAGTAGCAGGTTCAGTCTGCCAGTGcc < 2:407250/150‑1 (MQ=255) cTTGCGCACGCCCTGGATTTTCCTGTGCTTCTGGGTGTTGCTGGGCAGTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGGCATCATGGGCGACCAGCACGCACTGAGCAGTAGCAGGTTCAGTCTGCCAGTGCCtt > 1:702685/1‑150 (MQ=255) tGGATTTTCCTGTGCTTCTGGGTGTTGCTGGGCAGTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGGCATCATGGGCGACCAGCACGCACTGAGCAGTAGCAGGTTCAGTCTGCCAGTGCCTTGATCAACTGCTCa < 2:702685/150‑1 (MQ=255) tgtgCTTCTGGGTGTTGCTGGGCAGTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGGCATCATGGGCGACCAGCACGCACTGAGCAGTAGCAGGTTCAGTCTGCCAGTGCCTTGGTCAACTGCTCATTGAAGGCgg < 1:306489/150‑1 (MQ=255) gCTTCTGGGTGTTGCTGGGCAGTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGGCATCATGGGCGACCAGCACGCACTGAGCAGTAGCAGGTTCAGTCTGCCAGTGCCTTGATCAACTGCTCATTGAAGGCGGGGa < 1:291798/150‑1 (MQ=255) tGGGTGTTGCTGGGCAGTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGGCATCATGGGCGACCAGCACGCACTGAGCAGTAGCAGGTTCAGTCTGCCAGTGTCTTGATCAACTGCTCATTGAAGGCGGGGATATCg > 1:157383/1‑150 (MQ=255) ttGCTGGGCAGTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGGCATCATGGGCGACCAGCACGCACTGAGCAGTAGCAGGTTCAGt < 2:381408/100‑1 (MQ=255) ttGCTGGGCAGTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGGCATCATGGGCGACCAGCACGCACTGAGCAGTAGCAGGTTCAGt > 1:381408/1‑100 (MQ=255) cAGTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGGCATCATGGGCGACCAGCACGCACTGAGCAGTAGCAGGTTCAGTCTGCCAGTGCCTTGATCAACTGCTCATTGAAGGCGGGGATATCGTCcggctggcggct > 2:765998/1‑150 (MQ=255) gTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGcccatgatgccgac > 1:857379‑M1/1‑46 (MQ=255) gTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGcccatgatgccgac < 2:857379‑M1/60‑15 (MQ=255) ttATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGGCATCATGGGcgacca < 1:123331‑M2/61‑7 (MQ=255) ttATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGGCATCATGGGcgacca > 2:123331‑M2/1‑55 (MQ=255) aTTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGGCATCATGGGCGACCAGCACGCACTGAGCAGTAGCAGGTTCAGTCTGCCAGTGCCTTGATCAACTGCTCATTGAAGGCGGGGATATCGTCCGGCTGGCGGCTGGtag < 1:78477/150‑3 (MQ=255) ttCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGcccatgatgccgacca < 2:156780‑M1/58‑17 (MQ=255) ttCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGcccatgatgccgacca > 1:156780‑M1/1‑42 (MQ=255) ttCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGGCATCATGGGCGACCAGCACGCACTGAGCAGTa > 2:353066/1‑75 (MQ=255) ttCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGGCATCATGGGCGACCAGCACGCACTGAGCAGTa < 1:353066/75‑1 (MQ=255) ttCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGGCATCATGGGCGACCAGCACGCACTGAGCAGTAGCAGGTTCAGTCTGCCAGTGCCTTGATCAACTGCTCATTGAAGGCGGGGATATCGTCCGGCTGGCGGCTGGtgat > 2:532397/1‑150 (MQ=255) tCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGGCATCATGGGCGACCAGCACGCACTGAGCAGTAGCAGGTTCAGTCTGCCAGTGCCTTGATCAACTGCTCATTGAAGGCGGGGATATCGTCCGGCTGGCGGCTGGTGATGAGGTTGc < 1:532397/150‑1 (MQ=255) aGCTGGCGTGATCAGTGCGTGCTGGTCGGCATCATGGGCGACCAGCACGCACTGAGCAGTAGCAGGTTCAGTCTGCCAGTGCCTTGATCAACTGCTCATTGAAGGCGGGGATATCGTCCGGCTGGCGGCTGGTGATGAGGTTGCCATCGa < 2:433300/150‑1 (MQ=255) cGTGATCAGTGCGTGCTGGTCGGCATCATGGGCGACCAGCACGCACTGAGCAGTAGCAGGTTCAGTCTGCCAGTGCCTTGATCAACTGCTCATTGAAGGCGGGGATATCGTCCGGCTGGCGGCTGGTGATGAGGTTGCCATCGAccacca < 2:613793/150‑1 (MQ=255) tgcgtgcTGGTCGGCATCATGGGCGACCAGCACGCACTGAGCAGTAGCAGGTTCAGTCTGCCAGTGCCTTGATCAACTGCTCATTGAAGGCGGGGATATCGTCCGGCTGGCGGCTGGTGATGAGGTTGCCATCGACCACCACTTGTTCAt < 1:954239/150‑1 (MQ=255) gcgtgcTGGTCGcccatgatgccgaccagcacgcactgatcacgccagctggatgaaaaccgaataactgcccagcaacacccagaagcacaggaaaatccagggcgtgcgcaaggaaaacagcagcgatttgcggtgccccgcctgaga < 1:433300‑M1/150‑139 (MQ=255) tgcTGGTCGcccatgatgccgaccagcacgcactgatcacgccagctggatgaaaaccgaataactgcccagcaacacccagaagcacaggaaaatccagggcgtgcgcaaggaaaacagcagcgatttgcggtgccccgcctgagaggt < 2:954239‑M1/150‑142 (MQ=255) tgcTGGTCGcccatgatgccgaccagcacgcactgatcacgccagctggatgaaaaccgaataactgcccagcaacacccagaagcacaggaaaatccagggcgtgcgcaaggaaaacagcagcgatttgcggtgccccgcctgagaggt > 1:724024‑M1/1‑9 (MQ=255) gcTGGTCGcccatgatgccgaccagcacgcactgatcacgccagctggatgaaaaccgaataactgcccagcaacacccagaagcacaggaaaatccagggcgtgcgcaaggaaaacagcagcgatttgcggtgccccgcctgagaggtt < 1:684644‑M1/150‑143 (MQ=255) gcTGGTCGGCATCATGGGcgaccagcacgcactgatcacgccagctggatgaaaaccgaataactgcccagaaacacccagaagcacaggaaaatccagggcgtgcgcaaggaaaacagcagcgatttgcggtgccccgcctgagaggtt < 2:637606‑M2/150‑133 (MQ=255) gcTGGTCGGCATCATCGGCGACCAGCACGCACTGAGCAGTAGCAGGTTCGGTCTGCCAGTGCCTTGATCAACTGCTCATTGAAGGCGGGGATATCGTCCGGCTGGCGGCTGGTGATGAGGTTGCCATCGACCACCACTTGTTCATccacc < 2:684644/150‑1 (MQ=255) cTGGTCGcccatgatgccgaccagcacgcactgatcacgccagctggatgaaaaccgaataactgcccagcaacacccagaagcacaggaaaatccagggcgtgcgcaaggaaaacagcagcgatttgcggtgccccgcctgagaggttt < 1:407250‑M1/150‑144 (MQ=255) tGGTCGcccatgatgccgaccagcacgcactgatcacgccagctggatgaaaaccgaataa > 2:123331‑M1/1‑6 (MQ=255) tGGTCGcccatgatgccgaccagcacgcactgatcacgccagctggatgaaaaccgaataa < 1:123331‑M1/61‑56 (MQ=255) tGGTCGGCATCATGGGcgaccagcacgcactgatcacgccagctggatgaaaaccgaa > 1:156780‑M2/1‑16 (MQ=255) tGGTCGGCATCATGGGcgaccagcacgcactgatcacgccagctggatgaaaaccgaa < 2:156780‑M2/58‑43 (MQ=255) tGGTCGGCATCATGGGCGACCAGCACGCACTGAGCAGTAGCAGGTTCAGTCTGCCAGTGCCTTGATCAACTGCTCATTGAAGGCGGGGATATCGTCCGGCTGGCGGCTGGTGATGAGGTTGCCATCGACCACCACTTGtt > 1:93521/1‑140 (MQ=255) tGGTCGGCATCATGGGCGACCAGCACGCACTGAGCAGTAGCAGGTTCAGTCTGCCAGTGCCTTGATCAACTGCTCATTGAAGGCGGGGATATCGTCCGGCTGGCGGCTGGTGATGAGGTTGCCATCGACCACCACTTGtt < 2:93521/140‑1 (MQ=255) gTCGcccatgatgccgaccagcacgcactgatcacgccagctggatgaaaaccgaataactgcccagcaacacccagaagcacaggaaaatccagggcgtgcgcaaggaaaacagcagcgatttgcggtgccccgcctgagaggtttcag > 1:26989‑M1/1‑4 (MQ=255) gTCGGCATCATGGGcgaccagcacgcactgatcacgccagctggatgaaaaccgaataac > 1:857379‑M2/1‑14 (MQ=255) gTCGGCATCATGGGcgaccagcacgcactgatcacgccagctggatgaaaaccgaataac < 2:857379‑M2/60‑47 (MQ=255) tCGGCATCATGGGcgaccagcacgcactgatcacgccagctggatgaaaaccgaataactgcccagcaacacccagaagcacaggaaaatccagggcgtgcgcaaggaaaacagcagcgatttgcggtgccccgcct < 1:74697‑M2/137‑125 (MQ=255) tCGGCATCATGGGcgaccagcacgcactgatcacgccagctggatgaaaaccgaataactgcccagcaacacccagaagcacaggaaaatccagggcgtgcgcaaggaaaacagcagcgatttgcggtgccccgcct > 2:74697‑M2/1‑13 (MQ=255) cGGCATCATGGGCGACCAGCACGCACTGAGCAGTAGCAGGTTCAGTCTGCCAGTGCCTTGATCAACTGCTCATTGAAGGCGGGGATATCGTCCGGCTGGCGGCTGGTGATGAGGTTGCCATCGACCACCACTTGTTCATCCACCCACGTa < 2:737544/150‑1 (MQ=255) | TGCGAGGCTGAAACCTCTCAGGCGGGGCACCGCAAATCGCTGCTGTTTTCCTTGCGCACGCCCTGGATTTTCCTGTGCTTCTGGGTGTTGCTGGGCAGTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGGCATCATGGGCGACCAGCACGCACTGAGCAGTAGCAGGTTCAGTCTGCCAGTGCCTTGATCAACTGCTCATTGAAGGCGGGGATATCGTCCGGCTGGCGGCTGGTGATGAGGTTGCCATCGACCACCACTTGTTCATCCACCCACGTA > NC_002947/3110817‑3111107 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |