New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3110959	31 (0.790)	9 (0.260)	9/232	2.8	26.1%	intergenic (+17/+40)	PP_2724/pfpI	hypothetical protein/protease PfpI
	?	NC_002947	= 3110969	24 (0.700)					intergenic (+27/+30)	PP_2724/pfpI	hypothetical protein/protease PfpI

CTGAAACCTCTCAGGCGGGGCACCGCAAATCGCTGCTGTTTTCCTTGCGCACGCCCTGGATTTTCCTGTGCTTCTGGGTGTTGCTGGGCAGTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGGCATCATGGGCGACCAGCACGCACTGAGCAGTAGCAGGTTCAGTCTGCCAGTGCCTTGATCAACTGCTCATTGAAGGCGGGGATATCGTCCGGCTGGCGGCTGGTGATGAGGTTGCCATCGACCACCACTTGTTCATCCACCCACGTA  >  NC_002947/3110824‑3111107                                                                                                                                                  |                                                                                                                                           cTGAAACCTCTCAGGCGGGGCACCGCAAATCGCTGCTGTTTTCCTTGCGCACGCCCTGGATTTTCCTGTGCTTCTGGGTGTTGCTGGGCAGTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGGCATCATGGGcgac                                                                                                                                        >  1:26989‑M2/1‑146 (MQ=255)    aaaCCTCTCAGGCGGGGCACCGCAAATCGCTGCTGTTTTCCTTGCGCACGCCCTGGATTTTCCTGTGCTTCTGGGTGTTGCTGGGCAGTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGGCATCATGGGcgaccag                                                                                                                                     <  1:407250‑M2/150‑8 (MQ=255)     aaCCTCTCAGGCGGGGCACCGCAAATCGCTGCTGTTTTCCTTGCGCACGCCCTGGATTTTCCTGTGCTTCTGGGTGTTGCTGGGCAGTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGGCATCATGGGcgaccagc                                                                                                                                    <  1:684644‑M2/150‑9 (MQ=255)      aCCTCTCAGGCGGGGCACCGCAAATCGCTGCTGTTTTCCTTGCGCACGCCCTGGATTTTCCTGTGCTTCTGGGTGTTGCTGGGCAGTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGGCATCATGGGcgaccagca                                                                                                                                   <  2:954239‑M2/150‑10 (MQ=255)      aCCTCTCAGGCGGGGCACCGCAAATCGCTGCTGTTTTCCTTGCGCACGCCCTGGATTTTCCTGTGCTTCTGGGTGTTGCTGGGCAGTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGGCATCATGGGcgaccagca                                                                                                                                   >  1:724024‑M2/1‑141 (MQ=255)         tctcAGGCGGGGCACCGCAAATCGCTGCTGTTTTCCTTGCGCACGCCCTGGATTTTCCTGTGCTTCTGGGTGTTGCTGGGCAGTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGGCATCATGGGcgaccagcacgc                                                                                                                                <  1:433300‑M2/150‑13 (MQ=255)                       ccGCAAATCGCTGCTGTTTTCCTTGCGCACGCCCTGGATTTTCCTGTGCTTCTGGGTGTTGCTGGGCAGTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGGCATCATGGGCGACCAGCACGCACTGAGCAGTAGCa                                                                                                                  >  2:306489/1‑150 (MQ=255)                        cGCAAATCGCTGCTGTTTTCCTTGCGCACGCCCTGGATTTTCCTGTGCTTCTGGGTGTTGCTGGGCAGTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGGCATCATggg                                                                                                                                            >  2:634428/1‑123 (MQ=255)                        cGCAAATCGCTGCTGTTTTCCTTGCGCACGCCCTGGATTTTCCTGTGCTTCTGGGTGTTGCTGGGCAGTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGGCATCATggg                                                                                                                                            <  1:634428/123‑1 (MQ=255)                             aTCGCTGCTGTTTTCCTTGCGCACGCCCTGGATTTTCCTGTGCTTCTGGGTGTTGCTGGGCAGTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGGCATCATGGGCGACCAGCACGCACTGAGCAGTa                                                                                                                     <  1:377658/141‑1 (MQ=255)                             aTCGCTGCTGTTTTCCTTGCGCACGCCCTGGATTTTCCTGTGCTTCTGGGTGTTGCTGGGCAGTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGGCATCATGGGCGACCAGCACGCACTGAGCAGTa                                                                                                                     >  2:377658/1‑141 (MQ=255)                                          tCCTTGCGCACGCCGTGGATTTTCCTGTGCTTCTGGGTGTTGCTGGGCAGTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGGCATCATGGGCGACCAGCACGCACTGAGCAGTAGCAGGTTCAGTCTGCCAGTGcc                                                                                               <  2:407250/150‑1 (MQ=255)                                            cTTGCGCACGCCCTGGATTTTCCTGTGCTTCTGGGTGTTGCTGGGCAGTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGGCATCATGGGCGACCAGCACGCACTGAGCAGTAGCAGGTTCAGTCTGCCAGTGCCtt                                                                                             >  1:702685/1‑150 (MQ=255)                                                         tGGATTTTCCTGTGCTTCTGGGTGTTGCTGGGCAGTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGGCATCATGGGCGACCAGCACGCACTGAGCAGTAGCAGGTTCAGTCTGCCAGTGCCTTGATCAACTGCTCa                                                                                <  2:702685/150‑1 (MQ=255)                                                                   tgtgCTTCTGGGTGTTGCTGGGCAGTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGGCATCATGGGCGACCAGCACGCACTGAGCAGTAGCAGGTTCAGTCTGCCAGTGCCTTGGTCAACTGCTCATTGAAGGCgg                                                                      <  1:306489/150‑1 (MQ=255)                                                                      gCTTCTGGGTGTTGCTGGGCAGTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGGCATCATGGGCGACCAGCACGCACTGAGCAGTAGCAGGTTCAGTCTGCCAGTGCCTTGATCAACTGCTCATTGAAGGCGGGGa                                                                   <  1:291798/150‑1 (MQ=255)                                                                           tGGGTGTTGCTGGGCAGTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGGCATCATGGGCGACCAGCACGCACTGAGCAGTAGCAGGTTCAGTCTGCCAGTGTCTTGATCAACTGCTCATTGAAGGCGGGGATATCg                                                              >  1:157383/1‑150 (MQ=255)                                                                                 ttGCTGGGCAGTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGGCATCATGGGCGACCAGCACGCACTGAGCAGTAGCAGGTTCAGt                                                                                                          <  2:381408/100‑1 (MQ=255)                                                                                 ttGCTGGGCAGTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGGCATCATGGGCGACCAGCACGCACTGAGCAGTAGCAGGTTCAGt                                                                                                          >  1:381408/1‑100 (MQ=255)                                                                                         cAGTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGGCATCATGGGCGACCAGCACGCACTGAGCAGTAGCAGGTTCAGTCTGCCAGTGCCTTGATCAACTGCTCATTGAAGGCGGGGATATCGTCcggctggcggct                                                >  2:765998/1‑150 (MQ=255)                                                                                            ttATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGGCATCATGGGcgacca                                                                                                                                      <  1:123331‑M2/61‑7 (MQ=255)                                                                                            ttATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGGCATCATGGGcgacca                                                                                                                                      >  2:123331‑M2/1‑55 (MQ=255)                                                                                              aTTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGGCATCATGGGCGACCAGCACGCACTGAGCAGTAGCAGGTTCAGTCTGCCAGTGCCTTGATCAACTGCTCATTGAAGGCGGGGATATCGTCCGGCTGGCGGCTGGtag                                           <  1:78477/150‑3 (MQ=255)                                                                                               ttCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGGCATCATGGGCGACCAGCACGCACTGAGCAGTa                                                                                                                     >  2:353066/1‑75 (MQ=255)                                                                                               ttCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGGCATCATGGGCGACCAGCACGCACTGAGCAGTa                                                                                                                     <  1:353066/75‑1 (MQ=255)                                                                                               ttCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGGCATCATGGGCGACCAGCACGCACTGAGCAGTAGCAGGTTCAGTCTGCCAGTGCCTTGATCAACTGCTCATTGAAGGCGGGGATATCGTCCGGCTGGCGGCTGGtgat                                          >  2:532397/1‑150 (MQ=255)                                                                                                       tCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGGCATCATGGGCGACCAGCACGCACTGAGCAGTAGCAGGTTCAGTCTGCCAGTGCCTTGATCAACTGCTCATTGAAGGCGGGGATATCGTCCGGCTGGCGGCTGGTGATGAGGTTGc                                  <  1:532397/150‑1 (MQ=255)                                                                                                             aGCTGGCGTGATCAGTGCGTGCTGGTCGGCATCATGGGCGACCAGCACGCACTGAGCAGTAGCAGGTTCAGTCTGCCAGTGCCTTGATCAACTGCTCATTGAAGGCGGGGATATCGTCCGGCTGGCGGCTGGTGATGAGGTTGCCATCGa                            <  2:433300/150‑1 (MQ=255)                                                                                                                   cGTGATCAGTGCGTGCTGGTCGGCATCATGGGCGACCAGCACGCACTGAGCAGTAGCAGGTTCAGTCTGCCAGTGCCTTGATCAACTGCTCATTGAAGGCGGGGATATCGTCCGGCTGGCGGCTGGTGATGAGGTTGCCATCGAccacca                      <  2:613793/150‑1 (MQ=255)                                                                                                                            tgcgtgcTGGTCGGCATCATGGGCGACCAGCACGCACTGAGCAGTAGCAGGTTCAGTCTGCCAGTGCCTTGATCAACTGCTCATTGAAGGCGGGGATATCGTCCGGCTGGCGGCTGGTGATGAGGTTGCCATCGACCACCACTTGTTCAt             <  1:954239/150‑1 (MQ=255)                                                                                                                                 gcTGGTCGGCATCATGGGcgaccagcacgcactgatcacgccagctggatgaaaaccgaataactgcccagaaacacccagaagcacaggaaaatccagggcgtgcgcaaggaaaacagcagcgatttgcggtgccccgcctgagaggtt        <  2:637606‑M2/150‑133 (MQ=255)                                                                                                                                 gcTGGTCGGCATCATCGGCGACCAGCACGCACTGAGCAGTAGCAGGTTCGGTCTGCCAGTGCCTTGATCAACTGCTCATTGAAGGCGGGGATATCGTCCGGCTGGCGGCTGGTGATGAGGTTGCCATCGACCACCACTTGTTCATccacc        <  2:684644/150‑1 (MQ=255)                                                                                                                                   tGGTCGGCATCATGGGcgaccagcacgcactgatcacgccagctggatgaaaaccgaa                                                                                                  <  2:156780‑M2/58‑43 (MQ=255)                                                                                                                                   tGGTCGGCATCATGGGcgaccagcacgcactgatcacgccagctggatgaaaaccgaa                                                                                                  >  1:156780‑M2/1‑16 (MQ=255)                                                                                                                                   tGGTCGGCATCATGGGCGACCAGCACGCACTGAGCAGTAGCAGGTTCAGTCTGCCAGTGCCTTGATCAACTGCTCATTGAAGGCGGGGATATCGTCCGGCTGGCGGCTGGTGATGAGGTTGCCATCGACCACCACTTGtt                >  1:93521/1‑140 (MQ=255)                                                                                                                                   tGGTCGGCATCATGGGCGACCAGCACGCACTGAGCAGTAGCAGGTTCAGTCTGCCAGTGCCTTGATCAACTGCTCATTGAAGGCGGGGATATCGTCCGGCTGGCGGCTGGTGATGAGGTTGCCATCGACCACCACTTGtt                <  2:93521/140‑1 (MQ=255)                                                                                                                                     gTCGGCATCATGGGcgaccagcacgcactgatcacgccagctggatgaaaaccgaataac                                                                                              >  1:857379‑M2/1‑14 (MQ=255)                                                                                                                                     gTCGGCATCATGGGcgaccagcacgcactgatcacgccagctggatgaaaaccgaataac                                                                                              <  2:857379‑M2/60‑47 (MQ=255)                                                                                                                                      tCGGCATCATGGGcgaccagcacgcactgatcacgccagctggatgaaaaccgaataactgcccagcaacacccagaagcacaggaaaatccagggcgtgcgcaaggaaaacagcagcgatttgcggtgccccgcct                >  2:74697‑M2/1‑13 (MQ=255)                                                                                                                                      tCGGCATCATGGGcgaccagcacgcactgatcacgccagctggatgaaaaccgaataactgcccagcaacacccagaagcacaggaaaatccagggcgtgcgcaaggaaaacagcagcgatttgcggtgccccgcct                <  1:74697‑M2/137‑125 (MQ=255)                                                                                                                                       cGGCATCATGGGCGACCAGCACGCACTGAGCAGTAGCAGGTTCAGTCTGCCAGTGCCTTGATCAACTGCTCATTGAAGGCGGGGATATCGTCCGGCTGGCGGCTGGTGATGAGGTTGCCATCGACCACCACTTGTTCATCCACCCACGTa  <  2:737544/150‑1 (MQ=255)                                                                                                                                          catcatGGGcgaccagcacgcactgatcacgccagctggatgaaaaccgaataactgcccagcaacacccagaagcacaggaaaatccagggcgtgcgcaaggaaaacagcagcgatttgcggtgccccgcctgagaggt         >  1:863797‑M2/1‑9 (MQ=255)                                                                                                                                          catcatGGGcgaccagcacgcactgatcacgccagctggatgaaaaccgaataactgcccagcaacacccagaagcacaggaaaatccagggcgtgcgcaaggaaaacagcagcgatttgcggtgccccgcctgagaggt         <  2:863797‑M2/140‑132 (MQ=255)                                                                                                                                                  |                                                                                                                                           CTGAAACCTCTCAGGCGGGGCACCGCAAATCGCTGCTGTTTTCCTTGCGCACGCCCTGGATTTTCCTGTGCTTCTGGGTGTTGCTGGGCAGTTATTCGGTTTTCATCCAGCTGGCGTGATCAGTGCGTGCTGGTCGGCATCATGGGCGACCAGCACGCACTGAGCAGTAGCAGGTTCAGTCTGCCAGTGCCTTGATCAACTGCTCATTGAAGGCGGGGATATCGTCCGGCTGGCGGCTGGTGATGAGGTTGCCATCGACCACCACTTGTTCATCCACCCACGTA  >  NC_002947/3110824‑3111107

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.