New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 280956	28 (0.990)	4 (0.150)	4/236	NT	12.1%	coding (85/795 nt)	fliY	cystine‑binding protein
	?	NC_002947	= 280974	31 (1.150)					coding (67/795 nt)	fliY	cystine‑binding protein

CCCCAGCTCCTTGGCCAGCAGCTCGGACAGCTCCACTTCGAAGCCGGTCAGTTTGCCGTTTTCGTCCTGGAAGCTGAATGGCGGGTAGGTGCCCTCGAGGCCGACGTTGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/280813‑280956 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctcAGCCAGGCTTTCGCCGGCGAGCAATTGAAGACCATCCA  <  NC_002947/280974‑280937                                                                                                                                                                                        CCCCAGCTCCTTGGCCAGCAGCTCGGACAGCTCCACTTCGAAGCCGGTCAGTTTGCCGTTTTCGTCCTGGAAGCTGAATGGCGGGTAGGTGCCCTCGAGGCCGACGTTGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTCAGCCAG                                  >  2:243138/1‑150                                 CCACTTCGAAGCCGGTCAGTTTGCCGTTTTCGTCCTGGAAGCTGAATGGCGGGTAGGTGCCCTCGAGGCCGACGTTGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTCAGCCAGGCTTTCGCCGGCGAGCAATTGAAGACCATCCA  <  1:243138/150‑1                                                                                 GCGGGTAGGTGCCCTCGAGGCCGACGTTGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTCAGCCAGGCTTTCGCCGGCGAGCAATTGA            <  1:536628/92‑1                                                                                 GCGGGTAGGTGCCCTCGAGGCCGACGTTGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTCAGCCAGGCTTTCGCCGGCGAGCAATTGA            >  2:536628/1‑92                                                                                                                                                                                        CCCCAGCTCCTTGGCCAGCAGCTCGGACAGCTCCACTTCGAAGCCGGTCAGTTTGCCGTTTTCGTCCTGGAAGCTGAATGGCGGGTAGGTGCCCTCGAGGCCGACGTTGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/280813‑280956 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctcAGCCAGGCTTTCGCCGGCGAGCAATTGAAGACCATCCA  <  NC_002947/280974‑280937

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.