New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 280956	28 (0.990)	4 (0.150)	4/236	NT	12.1%	coding (85/795 nt)	fliY	cystine‑binding protein
	?	NC_002947	= 280974	31 (1.150)					coding (67/795 nt)	fliY	cystine‑binding protein

GGACAGCTCCACTTCGAAGCCGGTCAGTTTGCCGTTTTCGTCCTGGAAGCTGAATGGCGGGTAGGTGCCCTCGAGGCCGACGTTGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGTTTGGCGAATTTCGACATGGCAGAGCCCCGCGCTTGTTGTCTAGGTAGTGAGGTGGCGACTATAGGGTTGGCTGATTAGGCCGGGAAATACTAAAA  >  NC_002947/280837‑281118                                                                                                                                          |                                                                                                                                                 ggACAGCTCCACTTCGAAGCCGGTCAGTTTGCCGTTTTCGTCCTGGAAGCTGAATGGCGGGTAGGTGCCCTCGAGGCCGACGTTGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAg                                                                                                                                            <  2:640975/144‑1 (MQ=255) ggACAGCTCCACTTCGAAGCCGGTCAGTTTGCCGTTTTCGTCCTGGAAGCTGAATGGCGGGTAGGTGCCCTCGAGGCCGACGTTGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAg                                                                                                                                            >  1:640975/1‑144 (MQ=255)       cTCCACTTCGAAGCCGGTCAGTTTGCCGTTTTCGTCCTGGAAGCTGAATGGCGGGTAGGTGCCCTCGAGGCCGACGTTGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCcag                                                                                                                                >  1:642771/1‑150 (MQ=255)         ccACTTCGAAGCCGGTCAGTTTGCCGTTTTCGTCCTGGAAGCTGAATGGCGGGTAGGTGCCCTCGAGGCCGACGTTGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCcagca                                                                                                                              >  1:447581/1‑150 (MQ=255)          cACTTCGAAGCCGGTCAGTTTGCCGTTTTCGTCCTGGAAGCTGAATGGCGGGTAGGTGCCCTCGAGGCCGACGTTGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCcagcag                                                                                                                             <  2:59403/150‑1 (MQ=255)              tCGAAGCCGTGCAGTTTGCCGTTTTCGTCCTGGAAGCTGAATGGCGGGTAGGTCCCCTCGAGGCCGACGTTGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCaggagg                                                                                                                         <  1:717789/150‑1 (MQ=255)                               tccGTTTTCGTCCTGGAAGCTGAATGGCGGGTAGGTGCCCTCGAGGCCGACGTCGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGCGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAg                                                                                                        <  1:717825/149‑1 (MQ=255)                                ccGTTTTCGTCCTGGAAGCTGAATGGCGGGTAGGTGCCCTCGAGGCCGACGTTGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGt                                                                                                       >  2:330729/1‑150 (MQ=255)                                           cTGGAAGCTGAATGGCGGGTAGGTGCCCTCGAGGCCGACGTTGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCATCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGTTTTGc                                                                                            <  2:523012/150‑1 (MQ=255)                                           cTGGAAGCTGAATGGCGGGTAGGTGCCCTCGAGGCCGACGTTGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGTTTGGc                                                                                            <  2:34032/150‑1 (MQ=255)                                                          cGGGTAGGTGCCCTCGAGGCCGACGTTGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGTTTGGCGAATTTCGACATGGc                                                                             <  2:447581/150‑1 (MQ=255)                                                             gTAGGTGCCCTCGAGGCCGACGTTGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGTTTGGCGAATTTCGACATGGCaga                                                                          >  2:243523/1‑150 (MQ=255)                                                                              cGACGTTGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGtt                                                                                                           >  2:650442/1‑100 (MQ=255)                                                                              cGACGTTGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGtt                                                                                                           <  1:650442/100‑1 (MQ=255)                                                                                aCGTTGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGTTTGGCGAATTTCGACATGGCAGAGCCCCGCGCTTGTTGTCTa                                                       <  1:330729/150‑1 (MQ=255)                                                                                     gatgaCGCCTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGTTTg                                                                                              >  1:630277/1‑106 (MQ=255)                                                                                     gatgaCGCCTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGTTTg                                                                                              <  2:630277/106‑1 (MQ=255)                                                                                         aCGCCTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGtt                                                                                                <  1:562646/100‑1 (MQ=255)                                                                                         aCGCCTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGtt                                                                                                >  2:562646/1‑100 (MQ=255)                                                                                           gCCTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGTTTGGTGAATTTCGACATGGCAGAGCCCCGCGCTTGTTGTCTAGGTAGTGAGGt                                            >  1:338524/1‑150 (MQ=255)                                                                                             cTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGACTGGCGTTGAGTAGCGATTGGGCGATTAACGAGGTGTGGGAGCCCCGCGCTTGTTGTCTAGGTAGTGAGGTgg                                          <  1:505934/150‑1 (MQ=255)                                                                                                    cTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGTTTGGCGAATTTCGACATGGCa                                                                            <  1:182394/109‑1 (MQ=255)                                                                                                    cTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGTTTGGCGAATTTCGACATGGCa                                                                            >  2:182394/1‑109 (MQ=255)                                                                                                     tGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTgagcaattgaagaccatccaggaaaaaggcgtcatcaacgtcggcctcgagggcacctacccgccattcagcttccaggacgaaaacggcaaactgaccggcttcgaagtgg                                  <  1:243138‑M2/150‑113 (MQ=255)                                                                                                            tCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGTTTGGCGAATTTCGACATGGCAGAGCCCCGCGCttgtt                                                            <  1:629727/117‑1 (MQ=255)                                                                                                            tCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGTTTGGCGAATTTCGACATGGCAGAGCCCCGCGCttgtt                                                            >  2:629727/1‑117 (MQ=255)                                                                                                            tCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGTTTGGCGAATTTCGACATGGCAGAGCCCCGCGCTTGTTGTCTAGGTAGTGAGGTGGCGACTATAGGGt                              <  2:456358/147‑1 (MQ=255)                                                                                                            tCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGTTTGGCGAATTTCGACATGGCAGAGCCCCGCGCTTGTTGTCTAGGTAGTGAGGTGGCGACTATAGGGt                              >  1:456358/1‑147 (MQ=255)                                                                                                               tCAATTGCTCGCCGGCGAAAGCCTGGCTgagcaattgaagaccatccaggaaaaaggcgtcatcaacgtcggcctcgagggcacctacccgc                                                                                  >  2:536628‑M2/1‑28 (MQ=255)                                                                                                               tCAATTGCTCGCCGGCGAAAGCCTGGCTgagcaattgaagaccatccaggaaaaaggcgtcatcaacgtcggcctcgagggcacctacccgc                                                                                  <  1:536628‑M2/92‑65 (MQ=255)                                                                                                                   ttGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGTTTGGCGAATTTCGACATGGCAGAGCCCCGCGCTTGTTGTCTAGGTAGTGAGGTGGCGACTATAGGGTTGGCTGATTa                    <  2:358335/150‑1 (MQ=255)                                                                                                                       tCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGTTTGGCGAATTTCGACATGGCAGAGCCCCGCGCTTGTTGTCTAGGTAGTGAGGTGGCGa                                       >  2:604080/1‑127 (MQ=255)                                                                                                                       tCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGTTTGGCGAATTTCGACATGGCAGAGCCCCGCGCTTGTTGTCTAGGTAGTGAGGTGGCGa                                       <  1:604080/127‑1 (MQ=255)                                                                                                                          ccGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGTTTGGCGAATTTCGACATGGCAGAGCCCCGCGCTTGTTGTCTAGGTAGTGAGGTGGCGACTATAGGGTTGGCTGATTAGGCCggg             <  1:243523/150‑1 (MQ=255)                                                                                                                                     cTGGCTgagcaattgaagaccatccaggaaaaaggcgtcatcaacgtcggcctcgagggcacctacccgccattcagcttccaggacgaaaacggcaaactgaccggcttcgaagtggagctgtccgagctgctggccaaggagctgggg  >  2:243138‑M2/1‑6 (MQ=255)                                                                                                                                     cTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGttt                                                                                               <  2:405427/57‑1 (MQ=255)                                                                                                                                     cTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGttt                                                                                               >  1:405427/1‑57 (MQ=255)                                                                                                                                          |                                                                                                                                                 GGACAGCTCCACTTCGAAGCCGGTCAGTTTGCCGTTTTCGTCCTGGAAGCTGAATGGCGGGTAGGTGCCCTCGAGGCCGACGTTGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGTTTGGCGAATTTCGACATGGCAGAGCCCCGCGCTTGTTGTCTAGGTAGTGAGGTGGCGACTATAGGGTTGGCTGATTAGGCCGGGAAATACTAAAA  >  NC_002947/280837‑281118

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.