New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 280956	28 (0.990)	4 (0.150)	4/236	NT	12.1%	coding (85/795 nt)	fliY	cystine‑binding protein
	?	NC_002947	= 280974	31 (1.150)					coding (67/795 nt)	fliY	cystine‑binding protein

ACCCCCAGCTCCTTGGCCAGCAGCTCGGACAGCTCCACTTCGAAGCCGGTCAGTTTGCCGTTTTCGTCCTGGAAGCTGAATGGCGGGTAGGTGCCCTCGAGGCCGACGTTGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGTTTGGCGAATTTCGACATGGCAGAGCCCCGCGCTTGTTGTCTAGGTAGTGAGGTGGCGACTATAGGGTTGGCTGATTA  >  NC_002947/280811‑281100                                                                                                                                                  |                                                                                                                                                 aCCCCCAGCTCCTTGGCCAGCAGCTCGGACAGCTCCACTTCGAAGCCGGTCAGTTTGCCGTTTTCGTCCTGGAAGCTGAATGGCGGGTAGGTGCCCTCGAGGCCGACGTTGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTCGCCg                                                                                                                                              <  1:88843/150‑1 (MQ=255)   ccccAGCTCCTTGGCCAGCAGCTCGGACAGCTCCACTTCGAAGCCGGTCAGTTTGCCGTTTTCGTCCTGGAAGCTGAATGGCGGGTAGGTGCCCTCGAGGCCGACGTTGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTCagccag                                                                                                                                            >  2:243138‑M1/1‑144 (MQ=255)                           ggACAGCTCCACTTCGAAGCCGGTCAGTTTGCCGTTTTCGTCCTGGAAGCTGAATGGCGGGTAGGTGCCCTCGAGGCCGACGTTGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAg                                                                                                                          <  2:640975/144‑1 (MQ=255)                           ggACAGCTCCACTTCGAAGCCGGTCAGTTTGCCGTTTTCGTCCTGGAAGCTGAATGGCGGGTAGGTGCCCTCGAGGCCGACGTTGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAg                                                                                                                          >  1:640975/1‑144 (MQ=255)                                 cTCCACTTCGAAGCCGGTCAGTTTGCCGTTTTCGTCCTGGAAGCTGAATGGCGGGTAGGTGCCCTCGAGGCCGACGTTGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCcag                                                                                                              >  1:642771/1‑150 (MQ=255)                                   ccACTTCGAAGCCGGTCAGTTTGCCGTTTTCGTCCTGGAAGCTGAATGGCGGGTAGGTGCCCTCGAGGCCGACGTTGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTCagccaggctttcgccggcgagcaattgaagaccatcca                                                                                                            <  1:243138‑M1/150‑39 (MQ=255)                                   ccACTTCGAAGCCGGTCAGTTTGCCGTTTTCGTCCTGGAAGCTGAATGGCGGGTAGGTGCCCTCGAGGCCGACGTTGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCcagca                                                                                                            >  1:447581/1‑150 (MQ=255)                                    cACTTCGAAGCCGGTCAGTTTGCCGTTTTCGTCCTGGAAGCTGAATGGCGGGTAGGTGCCCTCGAGGCCGACGTTGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCcagcag                                                                                                           <  2:59403/150‑1 (MQ=255)                                        tCGAAGCCGTGCAGTTTGCCGTTTTCGTCCTGGAAGCTGAATGGCGGGTAGGTCCCCTCGAGGCCGACGTTGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCaggagg                                                                                                       <  1:717789/150‑1 (MQ=255)                                                         tccGTTTTCGTCCTGGAAGCTGAATGGCGGGTAGGTGCCCTCGAGGCCGACGTCGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGCGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAg                                                                                      <  1:717825/149‑1 (MQ=255)                                                          ccGTTTTCGTCCTGGAAGCTGAATGGCGGGTAGGTGCCCTCGAGGCCGACGTTGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGt                                                                                     >  2:330729/1‑150 (MQ=255)                                                                     cTGGAAGCTGAATGGCGGGTAGGTGCCCTCGAGGCCGACGTTGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCATCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGTTTTGc                                                                          <  2:523012/150‑1 (MQ=255)                                                                     cTGGAAGCTGAATGGCGGGTAGGTGCCCTCGAGGCCGACGTTGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGTTTGGc                                                                          <  2:34032/150‑1 (MQ=255)                                                                                   gCGGGTAGGTGCCCTCGAGGCCGACGTTGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTCagccaggctttcgccggcgagcaattga                                                                                                                      <  1:536628‑M1/92‑29 (MQ=255)                                                                                   gCGGGTAGGTGCCCTCGAGGCCGACGTTGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTCagccaggctttcgccggcgagcaattga                                                                                                                      >  2:536628‑M1/1‑64 (MQ=255)                                                                                    cGGGTAGGTGCCCTCGAGGCCGACGTTGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGTTTGGCGAATTTCGACATGGc                                                           <  2:447581/150‑1 (MQ=255)                                                                                       gTAGGTGCCCTCGAGGCCGACGTTGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGTTTGGCGAATTTCGACATGGCaga                                                        >  2:243523/1‑150 (MQ=255)                                                                                                        cGACGTTGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGtt                                                                                         >  2:650442/1‑100 (MQ=255)                                                                                                        cGACGTTGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGtt                                                                                         <  1:650442/100‑1 (MQ=255)                                                                                                          aCGTTGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGTTTGGCGAATTTCGACATGGCAGAGCCCCGCGCTTGTTGTCTa                                     <  1:330729/150‑1 (MQ=255)                                                                                                               gatgaCGCCTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGTTTg                                                                            <  2:630277/106‑1 (MQ=255)                                                                                                               gatgaCGCCTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGTTTg                                                                            >  1:630277/1‑106 (MQ=255)                                                                                                                   aCGCCTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGtt                                                                              <  1:562646/100‑1 (MQ=255)                                                                                                                   aCGCCTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGtt                                                                              >  2:562646/1‑100 (MQ=255)                                                                                                                     gCCTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGTTTGGTGAATTTCGACATGGCAGAGCCCCGCGCTTGTTGTCTAGGTAGTGAGGt                          >  1:338524/1‑150 (MQ=255)                                                                                                                       cTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGACTGGCGTTGAGTAGCGATTGGGCGATTAACGAGGTGTGGGAGCCCCGCGCTTGTTGTCTAGGTAGTGAGGTgg                        <  1:505934/150‑1 (MQ=255)                                                                                                                              cTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGTTTGGCGAATTTCGACATGGCa                                                          >  2:182394/1‑109 (MQ=255)                                                                                                                              cTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGTTTGGCGAATTTCGACATGGCa                                                          <  1:182394/109‑1 (MQ=255)                                                                                                                               tGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTgagcaattgaagaccatccaggaaaaaggcgtcatcaacgtcggcctcgagggcacctacccgccattcagcttccaggacgaaaacggcaaactgaccggcttcgaagtgg                <  1:243138‑M2/150‑113 (MQ=255)                                                                                                                                      tCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGTTTGGCGAATTTCGACATGGCAGAGCCCCGCGCttgtt                                          <  1:629727/117‑1 (MQ=255)                                                                                                                                      tCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGTTTGGCGAATTTCGACATGGCAGAGCCCCGCGCttgtt                                          >  2:629727/1‑117 (MQ=255)                                                                                                                                      tCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGTTTGGCGAATTTCGACATGGCAGAGCCCCGCGCTTGTTGTCTAGGTAGTGAGGTGGCGACTATAGGGt            <  2:456358/147‑1 (MQ=255)                                                                                                                                      tCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGTTTGGCGAATTTCGACATGGCAGAGCCCCGCGCTTGTTGTCTAGGTAGTGAGGTGGCGACTATAGGGt            >  1:456358/1‑147 (MQ=255)                                                                                                                                         tCAATTGCTCGCCGGCGAAAGCCTGGCTgagcaattgaagaccatccaggaaaaaggcgtcatcaacgtcggcctcgagggcacctacccgc                                                                <  1:536628‑M2/92‑65 (MQ=255)                                                                                                                                         tCAATTGCTCGCCGGCGAAAGCCTGGCTgagcaattgaagaccatccaggaaaaaggcgtcatcaacgtcggcctcgagggcacctacccgc                                                                >  2:536628‑M2/1‑28 (MQ=255)                                                                                                                                             ttGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGTTTGGCGAATTTCGACATGGCAGAGCCCCGCGCTTGTTGTCTAGGTAGTGAGGTGGCGACTATAGGGTTGGCTGATTa  <  2:358335/150‑1 (MQ=255)                                                                                                                                                 tCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGTTTGGCGAATTTCGACATGGCAGAGCCCCGCGCTTGTTGTCTAGGTAGTGAGGTGGCGa                     <  1:604080/127‑1 (MQ=255)                                                                                                                                                 tCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGTTTGGCGAATTTCGACATGGCAGAGCCCCGCGCTTGTTGTCTAGGTAGTGAGGTGGCGa                     >  2:604080/1‑127 (MQ=255)                                                                                                                                                  |                                                                                                                                                 ACCCCCAGCTCCTTGGCCAGCAGCTCGGACAGCTCCACTTCGAAGCCGGTCAGTTTGCCGTTTTCGTCCTGGAAGCTGAATGGCGGGTAGGTGCCCTCGAGGCCGACGTTGATGACGCCTTTTTCCTGGATGGTCTTCAATTGCTCGCCGGCGAAAGCCTGGCTGAGCAGGCCGGCACCCAGCAGGAGGGCCAGGCTGGCGTTGAGTAGCGGTTTGGCGAATTTCGACATGGCAGAGCCCCGCGCTTGTTGTCTAGGTAGTGAGGTGGCGACTATAGGGTTGGCTGATTA  >  NC_002947/280811‑281100

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.