| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 511921 | 39 (1.380) | 6 (0.240) | 6/216 | NT | 17.1% | intergenic (+58/‑90) | trpC/PP_0423 | indole‑3‑glycerol phosphate synthase/hypothetical protein |
| ? | NC_002947 | = 511969 | 24 (0.970) | intergenic (+106/‑42) | trpC/PP_0423 | indole‑3‑glycerol phosphate synthase/hypothetical protein | |||||
TTCCTGGTGGGTGAGGCGTTCATGCGCGCCGAGCAGCCTGGCCTGGAATTACAGCGGCTGTTCTTCCCCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/511759‑511921‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcctcttcgcgggTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCATTACAGGTACAAAAAAGCCGGCAAAAACGCCGGCTTCATTTGATCAGTCCAGTTGCTGAACAGTCTTCTTCACCTGCTCGGG < NC_002947/511969‑511825 TTCCTGGTGGGTGAGGCGTTCATGCGCGCCGAGCAGCCTGGCCTGGAATTACAGCGGCTGTTCTTCCCCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATG > 1:314412/1‑150TTCCTGGTGGGTGAGGCGTTCATGCGCGCCGAGCAGCCTGGCCTGGAATTACAGCGGCTGTTCTTCCCCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATG > 2:218506/1‑150 CCTGGTGGGTGAGGCGTTCATGCGCGCCGAGCAGCCTGGCCTGGAATTACAGCGGCTGTTCTTCCCCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGC < 1:423759/150‑1 CCTGGTGGGTGAGGCGTTCATGCGCGCCGAGCAGACTGGCCTGGAATTACAGCGGCTGTTCTTCCCCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGC < 1:541699/150‑1 GCGTTCATGCGCGCCGAGCAGCCTGGCCTGGAATTACAGCGGCTGTTCTTCCCCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGTA > 2:440390/1‑150 GAGCAGCCTGGCCTGGAATTACAGCGGCTGTTCTTCCTCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGCTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCCCGGGGAAACCGCCTCCcaagg > 1:648714/1‑145 CTGTTCTTCCCCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGG < 1:440390/150‑1 GTTCTTCCCCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATAGCCTCTTCGCGGGTAAACCCGCTCCTACGACAGGGCGCGTACTCGTGTAGGAGCGGGCT > 1:392429/1‑150 CCCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGCTTGCCCGC < 2:392429/150‑1 CCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGC < 1:636563/85‑1 CCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGC > 2:636563/1‑85 ATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGT < 1:128900/94‑1 ATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGT > 2:128900/1‑94 GGCCTCTTCGCGGGTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCATTACAGGTACAAAAAAGCCGGCAAAAACGCCGGCTTCATTTGATCAGTCCAGTTGCTGAACAGTCTTCTTCAC < 1:48167/150‑1 CCTCTTCGCGGGTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCATTACAGGTACAAAAAAGCCGGCAAAAACGCCGGCTTCATTTGATCAGTCCAGTTGCTGAACAGTCTTCTTCACCT > 1:563833/1‑150 TCTTCGCGGGTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCATTACAGGTACAAAAAAGCCGGCAAAAACGCCGGCTTCATTTGATCAGTCCAGTTGCTGAACAGTCTTCTTCACCTGC > 2:750597/1‑150 TCTTCGCGGGTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCATTACAGGTACAAAAAAGCCGGCAAAAACGCCGGCTTCATTTGATCAGTCCAGTTGCTGAA > 2:752125/1‑133 TCTTCGCGGGTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCATTACAGGTACAAAAAAGCCGGCAAAAACGCCGGCTTCATTTGATCAGTCCAGTTGCTGAA < 1:752125/133‑1 TTCGCGGGTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCATTACAGGTACAAAAAAGCCGGCAAAAACGCCGGCTTCATTTGATCAGTCCAGTTGCTGAACAGTCTTCTTCACCTGCTC < 1:721198/150‑1 GCGGGTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGCTTGGCCGCGAAGAGGCCATTACAGGTACAAAAAAGCCGGCAAAAACGCCGGCTTCATTTGATCAGTCCAGTTGCTGAACAGTCTTCTTCACCTGCTCGGG > 1:218506/1‑150 TTCCTGGTGGGTGAGGCGTTCATGCGCGCCGAGCAGCCTGGCCTGGAATTACAGCGGCTGTTCTTCCCCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/511759‑511921‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcctcttcgcgggTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCATTACAGGTACAAAAAAGCCGGCAAAAACGCCGGCTTCATTTGATCAGTCCAGTTGCTGAACAGTCTTCTTCACCTGCTCGGG < NC_002947/511969‑511825 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |