New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 511921	39 (1.380)	6 (0.240)	6/216	NT	17.1%	intergenic (+58/‑90)	trpC/PP_0423	indole‑3‑glycerol phosphate synthase/hypothetical protein
	?	NC_002947	= 511969	24 (0.970)					intergenic (+106/‑42)	trpC/PP_0423	indole‑3‑glycerol phosphate synthase/hypothetical protein

CTTCCCCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGAGCGTCGAACAAGGCCTGCACGCCGAGCAGGAACTGCTGGCCGCCGTCTGCCGTGGCGAACGCGAAAGTGGCGTGCTGTTCTGG  >  NC_002947/511821‑512118                                                                                                                                                     |                                                                                                                                                      ctgccccGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTACCCGGGTCCGCGCCCTGTCGTAGGAGCGGGTTTAc                                                                                                                                                      >  1:750597/4‑150 (MQ=255)     cccGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGCCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTAcccgc                                                                                                                                                  >  1:218506‑M2/1‑145 (MQ=255)        gAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTAcccgcgaa                                                                                                                                               <  1:721198‑M2/150‑9 (MQ=255)          gCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTAcccgcgaaga                                                                                                                                             >  2:750597‑M2/1‑140 (MQ=255)            aGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTAcccgcgaagagg                                                                                                                                           >  1:563833‑M2/1‑138 (MQ=255)              gTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTAcccgcgaagaggcc                                                                                                                                         <  1:48167‑M2/150‑15 (MQ=255)                 aagaagACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGt                                                                                                                                      >  2:577051/1‑150 (MQ=255)                 aagaagACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGt                                                                                                                                      <  1:574741/150‑1 (MQ=255)                  agaagaCTGTTCAGCAACTGTACTGATCAAATAAAGCCGGCGTTTAACCCCCCGTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTCTACCCGCGAAGAGGCCAGTg                                                                                                                                     <  2:512435/150‑1 (MQ=38)                      gaCTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGAAAt                                                                                                                                 <  2:315524/150‑1 (MQ=255)                         tGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGAAATCaa                                                                                                                              >  1:536751/1‑150 (MQ=255)                           ttCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTAcccgcgaaga                                                                                                                                             >  2:752125‑M2/1‑123 (MQ=255)                           ttCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTAcccgcgaaga                                                                                                                                             <  1:752125‑M2/133‑11 (MQ=255)                              aGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGAAATCAAcatca                                                                                                                         <  1:577051/150‑1 (MQ=255)                               gCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTGTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGAAATCAAcatcan                                                                                                                        <  2:435254/150‑2 (MQ=255)                                      gACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGa                                                                                                                 <  2:537341/150‑1 (MQ=255)                                         tGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGAAATc                                                                                                                                <  1:98140/132‑1 (MQ=255)                                         tGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGAAATc                                                                                                                                >  2:98140/1‑132 (MQ=255)                                               aaTGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGAcc                                                                                                        >  1:398716/1‑150 (MQ=255)                                                      ccGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTACACGCGAAGCGGCCCGTGAAATCCACATCATAGGTGGATCAATGACCGATCAAc                                                                                                 <  1:392783/150‑1 (MQ=255)                                                       cGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCGTCTTCGCGGGCAAGCCCGTTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTACCCGCGAAGACGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAAcc                                                                                                >  2:302147/1‑150 (MQ=255)                                                           aaaaacgCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTg                                                                                            <  2:93865/144‑1 (MQ=255)                                                            aaaacgCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTgg                                                                                           <  2:417050/145‑1 (MQ=255)                                                             ttttGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGc                                                                                          <  2:721198/150‑1 (MQ=255)                                                                  ccGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGa                                                                                     <  2:398716/150‑1 (MQ=255)                                                                  ccGGCTTTTTTGTACCTGTAATGGACCCTTCGCGGATAAGCTAGCACCTACAAAGGTACGCGGTCTGTGGTAGGAGCGGGTTTACCCTCGAAGACACCAGTGGACTCAACATAATACGTCGTTCAATGAACCATCAATCACTGGCCCTgg                                                                                     >  2:252270/1‑149 (MQ=255)                                                                   cGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGAg                                                                                    >  1:437252/1‑150 (MQ=255)                                                                                  tGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGAGCGTCGAACAAGGCCt                                                                     >  2:91636/1‑150 (MQ=255)                                                                                           ctctTCGCGGGCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGAGCGTCGAACAAGGCCTGCACGCCGa                                                            >  2:557499/1‑150 (MQ=255)                                                                                            tctTCGCGGGCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGAGCGTCGAACATGGCCTGCACGCCGAg                                                           >  1:66975/1‑150 (MQ=255)                                                                                                cgcgGGCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGAGCGTCGAACAAGGCCTGCACGCCGAGCAgg                                                       <  2:437252/150‑1 (MQ=255)                                                                                                 gcgGGCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTAcccgcgaagaggccattacaggtacaaaaaagccggcaaaaacgccggcttcatttgatcagtccagttgctgaacagtcttcttcacctgctcggg                                                      <  2:392429‑M2/150‑98 (MQ=255)                                                                                                      cAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGAGCGTCGAACAAGGCCTGCACGCCGAGCAGGAActgc                                                 <  2:48167/150‑1 (MQ=255)                                                                                                        aGCCCGCTCCTACACGAGTACGCGCCCTGTCGTAGGAGCGGGTTTAcccgcgaagaggctattacaggtacaaaaaagccggcaaaaacgccggcttcatttgatcagtccagttgctgaacagtcttcttcacctgctcggggaagaac                                               >  1:392429‑M2/1‑46 (MQ=255)                                                                                                          cccGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTAcccgcgaagaggccattacaggtacaaaaaagccggcaaaaacgccggcttcatttgatcagtccagttgctgaacagtcttcttcacctgctcggggaagaacag                                             <  1:440390‑M2/150‑107 (MQ=255)                                                                                                                   acacGGGTACGCGCCCTGTCGTAGGAGCGGGTTTAcccgcgaagaggccattacaggtacaaaaaagccggcaaaaacgccggcttcatttgat                                                                                            <  1:128900‑M2/94‑60 (MQ=255)                                                                                                                   acacGGGTACGCGCCCTGTCGTAGGAGCGGGTTTAcccgcgaagaggccattacaggtacaaaaaagccggcaaaaacgccggcttcatttgat                                                                                            >  2:128900‑M2/1‑35 (MQ=255)                                                                                                                     acGGGTACGCGCCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGAGCGTCGAACAAGGCCTGCACGCCGAGCAGGAACTGCTGGCCGCCGTCTGcc                                  <  1:557499/150‑1 (MQ=255)                                                                                                                            cgcgCCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGAGCGTCGAACAAGGCCTGCACGCCGAGCAGGAACTGCTGGCCGCCGTCTGCCGTGGCGa                           >  2:283981/1‑150 (MQ=255)                                                                                                                             gcgcCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGAGCGTCGAACAAGGCCTGCACGCCGAGCAGGAACTGCTGGCCGCCGTCTGCCGTGGCGaa                          >  1:99042/1‑150 (MQ=255)                                                                                                                                     ccttgggaggcgGTTTCcccgggaagaggccattacaggtacaaaaaagccggcaaaagcgccggcttcatttgatcagtccagttgctgaacagtcttcttcacctgctcgaggaagaacagccgctgtaattccaggccaggctgctc                  >  1:648714‑M2/6‑17 (MQ=255)                                                                                                                                                    tAcccgcgaagaggccattacaggtacaaaaaagccggcaaaaacgccggcttcatttgatcagtccagttgctgaacagtcttcttcacctgctcggggaagaacagccgctgtaattccaggccaggctgctcggcgcgcatgaacgc   >  2:440390‑M2/1‑2 (MQ=255)                                                                                                                                                     aCCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGAGCGTCGAACAAGGCCTGCACGCCGAGCAGGAACTGCTGGCCGCCGTCTGCCGTGGCGAACGCGAAAGTGGCGTGCTGTTCTgg  <  1:283981/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                      CTTCCCCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTACACGGGTACGCGCCCTGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTGAAATCAACATCATAGGTGGATCAATGACCGATCAACCCCTGGCCCTGAGCGTCGAACAAGGCCTGCACGCCGAGCAGGAACTGCTGGCCGCCGTCTGCCGTGGCGAACGCGAAAGTGGCGTGCTGTTCTGG  >  NC_002947/511821‑512118

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.