| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 681274 = | 24 (0.850) | 7 (0.300) | 6/204 | NT | 27.5% | intergenic (+11/+58) | PP_0583/PP_0584 | AraC family transcriptional regulator/methyl‑accepting chemotaxis transducer |
| ? | NC_002947 | 681322 = | 17 (0.730) | intergenic (+59/+10) | PP_0583/PP_0584 | AraC family transcriptional regulator/methyl‑accepting chemotaxis transducer | |||||
GGGATGCGCAGTTGGTGGCCGAGCTGGCCCAGGCGGCGCGCCAGGACTCCGAGAGCCTGGCCGGGCTGTCCAATGAGCTGGATACGCTGGTGCGCAGGTTCCGCACCTGATGATGCATGGCCTGTGCCGGCCCTTTCGCGGATAACCCCGCGAAAGGGCCGGCACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/681441‑681274‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcgaaagggccggcacaggCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGTCCTGGCGCGCCGCCTGGGCCAGCTCGGCCACCAACTGCGCATCCCCGTGAATCTGGCTGATGTGCCGGTTGATG > NC_002947/681322‑681470 GGGATGCGCAGTTGGTGGCCGAGCTGGCCCAGGCGGCGCGCCAGGACTCCGAGAGCCTGGCCGGGCTGTCCAATGAGCTGGATACGCTGGTGCGCAGGTTCCGCACCTGATGATGCATGGCCTGTGCCGGCCCTTTCGCGGATAACCCCG > 1:593665/1‑150 GGATGCGCAGTTGGTGGCCGAGCTGGCCCAGGCGGCGCGCCAGGACTCCGAGAGCCTGGCCGGGCTGTCCAATGAGCTGGATACGCTGGTGCGCAGGTTCCGCACCTGATGATGCATGGCCTGTGCCGGCCCTTTCGCGGATAACCCCGC < 1:206919/150‑1 GCAGTTGGTGGCCGAGCTGGCCCAGGCGGCGCGCCAGGACTCCGAGAGCCTGGCCGGGCTGTCCAATGAGCTGGATACGCTGGTGCGCAGGTTCCGCACCTGATGATGCATGGCCTGTGCCGGCCCTTTCGCGGATAACCCCGCGAAAGG > 1:192768/1‑150 GCAGTTGGTGGCCGAGCTGGCCCAGGCGGCGCGCCAGGACTCCGAGAGCCTGGCCGGGCTGTCCAATGAGCTGGATACGCTGGTGCGCAGGTTCCGCACCTGATGATGCATGGCCTGTGCCGGCCCTTTCGCGGATAACCCCGCGAAAGG < 2:593665/150‑1 CAGTTGGTGGCCGAGCTGGCCCAGGCGGCGCGCCAGGACTCCGAGAGCCTGGCCGGGCTGTCCAATGAGCTGGATACGCTGGTGCGCAGGTTCCGCACCTGATGATGCATGGCCTGTGCCGGCCCTTTCGTGGCTAACCCCGCGAAAGGG > 2:494761/1‑150 TGGCCGAGCTGGCCCAGGCGGCGCGCCAGGACTCCGAGAGCCTGGCCGGGCTGTCCAATGAGCTGGATACGCTGGTGCGCAGGTTCCGCACCTGATGATGCATGGCCTGTGCCGGCCCTTTCGCGGATAACCCCGCGAAAGGGCCGGCAC > 1:566048/1‑150 TCCAATGAGCTGGATACGCTGATGCGCAGGTTCCGCACCTGATGATGCATGGCCTGTGCCGGCCCTTTCGCGGATAACCCCGCGAAAGGGC < 1:437319/91‑1 TCCAATGAGCTGGATACGCTGATGCGCAGGTTCCGCACCTGATGATGCATGGCCTGTGCCGGCCCTTTCGCGGATAACCCCGCGAAAGGGC > 2:437319/1‑91 CCTTTCGCGGATAACCCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGTCCTGGCGCGCCGCCTGGGCCAGCTCGG < 1:436341/139‑1 CCTTTCGCGGATAACCCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGTCCTGGCGCGCCGCCTGGGCCAGCTCGG > 2:436341/1‑139 CCTTTCGCGGATAACCCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCG > 1:269856/1‑73 CCTTTCGCGGATAACCCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCG < 2:269856/73‑1 CTTTCGCGGATAACCCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCA > 1:231982/1‑69 CTTTCGCGGATAACCCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCA < 2:231982/69‑1 TTTCGCGGATAACCCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGTCCTGGCGCGCCGCCTGGGCCAGCTCGGCCACCAACTGCGC > 2:692769/1‑150 ggtgaCCCGCAAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCCGCGTATCCTGCTCCTTGACCATCCCGCCCAAGCTCGCGTAGTCCTGGCTCGCCGCCTGGGCCAGCTCGGCCACCAACTGCGCATCCCCGT < 1:467599/145‑1 CGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGTCCTGGCGCGCCGCCTGGGCCAGCTCGGCCACCAACTGCGCATCCCCGTGAATCTGGC < 2:206919/150‑1 CGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGTCCTGGCGCGCCGCCTGGGCCAGCTCGGCCACCAACTGCGCATCCCCGTGAATCTGGC < 2:471403/150‑1 GGGCCTGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGTCCTGGCGCGCCGCCTGGGCCAGCTCGGCCACCAACTGCGCATCCCCGTGAATCTGGCTGATG > 2:374104/1‑150 CACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGTCCTGGCGCGCCGCCTGG < 1:499223/98‑1 CACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGTCCTGGCGCGCCGCCTGG > 2:499223/1‑98 AGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGTCCTGGCGCGCCGCCTGGGCCAGCTCGGCCAGCAACTGCGCATCCCCGTGAATCTGGCTGATGTGCCGGTTGA > 2:512076/1‑150 GCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGTCCTGGCGCGCCGCCTGGGCCAGCTCGGCCACCAACTGC < 2:154652/114‑1 GCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGTCCTGGCGCGCCGCCTGGGCCAGCTAGGCCACCAACTGCGCATCCCCGTGAATCTGGCTGATGTGCCGGTTGATG > 1:81278/1‑150 GCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGGCCTGGCGCGCCGCCTGGGCCAGCTCGGCCACCAACTGC > 1:154652/1‑114 GGGATGCGCAGTTGGTGGCCGAGCTGGCCCAGGCGGCGCGCCAGGACTCCGAGAGCCTGGCCGGGCTGTCCAATGAGCTGGATACGCTGGTGCGCAGGTTCCGCACCTGATGATGCATGGCCTGTGCCGGCCCTTTCGCGGATAACCCCGCGAAAGGGCCGGCACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/681441‑681274‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcgaaagggccggcacaggCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGTCCTGGCGCGCCGCCTGGGCCAGCTCGGCCACCAACTGCGCATCCCCGTGAATCTGGCTGATGTGCCGGTTGATG > NC_002947/681322‑681470 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |