| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 681274 = | 24 (0.850) | 7 (0.300) | 6/204 | NT | 27.5% | intergenic (+11/+58) | PP_0583/PP_0584 | AraC family transcriptional regulator/methyl‑accepting chemotaxis transducer |
| ? | NC_002947 | 681322 = | 17 (0.730) | intergenic (+59/+10) | PP_0583/PP_0584 | AraC family transcriptional regulator/methyl‑accepting chemotaxis transducer | |||||
GTTGTCGTCGCTGGCGTTGCTGGAGGCGGGGGAGAATGTGACCGAGGCGGCGCTGGGGTGTGGGTATGACTCCACCTCGGCCTACATTGCGGCATTCAAGCAGCTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGTCCTGGCGCGCCGCCTGGGCCAGC > NC_002947/681125‑681419 | gttgtCGTCGCTGGCGTTGCTGGAGGCGGGGGAGAATGTGACCGAGGCGGCGCTGGGGTGTGGGTATGACTCCACCTCGGCCTACATTGCGGCATTCAAGCAGCTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTc > 1:580186/1‑150 (MQ=255)catcaaccggcacatcagccagattcacggggatgcgcagttggtggcctagctggcccaggcggcgcgccaggactccgagagcctggccgggctgtccaatgagctggatacgctggtgcgcaggttccgcacctgatgatgcatggc > 1:81278‑M1/150‑150 (MQ=255) ttgtCGTCGCTGGCGTTGCTGGAGGCGGGGGAGAATGTGACCGAGGCGGCGCTGGGGTGTGGGTATGACTCCACCTCGGCCTACATTGCGGCATTCAAGCAGCTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTcc > 2:597733/1‑150 (MQ=255) tcaaccggcacatcagccagattcacggggatgcgcagttgctggccgagctggcccaggcggcgcgccaggactccgagagcctggccgggctgtccaatgagctggatacgctggtgcgcaggttccgcacctgatgatgcatggCCt > 2:512076‑M1/148‑150 (MQ=255) cTGGCGTTGCTGGAGGCGGGGGAGAATGTGACCGAGGCGGCGCTGGGGTGTGGGTATGACTCCACCCCGGCCTACATTGCGGCATTCAAGCAGCTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGc > 2:433735/1‑150 (MQ=255) catcagccagattcacggggatgcgcagttggtggccgagctggcccaggcggcgcgccaggactccgagagcctggccgggctgtccaatgagctggatacgctggtgcgcaggttccgcacctgatgatgcatggCCTGTGCAGGccc > 2:374104‑M1/138‑150 (MQ=255) gccagattcacggggatgcgcagttggtggccgagctggcccaggcggcgcgccaggactccgagagcctggccgggctgtccaatgagctggatacgctggtgcgcaggttccgcacctgatgatgcatggCCTGTGCCGGCCCTTTcg < 2:471403‑M1/18‑1 (MQ=255) gccagattcacggggatgcgcagttggtggccgagctggcccaggcggcgcgccaggactccgagagcctggccgggctgtccaatgagctggatacgctggtgcgcaggttccgcacctgatgatgcatggCCTGTGCCGGCCCTTTcg < 2:206919‑M1/18‑1 (MQ=255) ggAGGCGGGGGAGAATGTGACCGAGGCGGCGCTGGGGTGTGGGTATGACTCCACCTCGGCCTACATTGCGGCATTCAAGCAGCTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCggg < 2:580186/150‑1 (MQ=255) ggAGGCGGGGGAGAATGTGACCGAGGCGGCGCTGGGGTGTGGGTATGACTCCACCTCGGCCTACATTGCGGCATTCAAGCAGCTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCggg < 2:299421/150‑1 (MQ=255) ggAGGCGGGGGAGAATGTGACCGAGGCGGCGCTGGGGTGTGGGTATGACTCCACCCCGGCCTACATTGCGGCATTCAAGCAGCTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCggg < 1:433735/150‑1 (MQ=255) gcggCGGGGGAGAATGTGAGCGAGGCGGCGCGGGGGTGTGACTAGGACTCCACCTCGGCCTACATTTCGGCATTCAAGCAGCTCTTTGCCCCGACACCCCGCCAACTCAAGCTCTGATTTCCGCTTCCCTCTGCCGACCCTTTCGCgggg < 2:68838/148‑1 (MQ=255) acggggatgcgcagttggtggccgagctggcccaggcggcgagccaggactacgcgagcttgggcgggatggtcaaggagcaggatacgcgggtgcgcaggttccgcacctgatgatgcatggCCTGTGCCGGCCCTtttgcgggtcacc < 1:467599‑M1/27‑6 (MQ=255) gggAGAATGTGACCGAGGCGGCGCTGGGGTGTGGGTATGACTCCACCTCGGCCTACATTGCGGCATTCAAGCAGCTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCcg > 1:377326/1‑150 (MQ=255) gcgcagttggtggccgagctggcccaggcggcgcgccaggactccgagagcctggccgggctgtccaatgagctggatacgctggtgcgcaggttccgcacctgatgatgcatggCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGaaa > 2:692769‑M1/116‑150 (MQ=255) gcagttggtggccgagctggcccaggcggcgcgccaggcctccgagagcctggccgggctgtccaatgagctggatacgctggtgcgcaggttccgcacctgatgatgcatggc > 1:154652‑M1/114‑114 (MQ=255) gcagttggtggccgagctggcccaggcggcgcgccaggactccgagagcctggccgggctgtccaatgagctggatacgctggtgcgcaggttccgcacctgatgatgcatggc < 2:154652‑M1/1‑1 (MQ=255) gtgACCGAGGCGGCGCTGGGGTGTGGGTATGACTCCACCTCGGCCTACATTGCGGCATTCAAGCAGCTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCCCGGGGTTATCCGCGAAAggg > 1:494761/1‑150 (MQ=255) ccgagctggcccaggcggcgcgccaggactccgagagcctggccgggctgtccaatgagctggatacgctggtgcgcaggttccgcacctgatgatgcatggCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAgg > 2:436341‑M1/103‑139 (MQ=255) ccgagctggcccaggcggcgcgccaggactccgagagcctggccgggctgtccaatgagctggatacgctggtgcgcaggttccgcacctgatgatgcatggCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAgg < 1:436341‑M1/37‑1 (MQ=255) ggcgCTGGGGTGTGGGTATGACTCCACCTCGGCCTACGTGGCGGCATTCAAGCAGCTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTCTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGc < 2:623621/150‑1 (MQ=255) ccaggcggcgcgccaggactccgagagcctggccgggctgtccaatgagctggatacgctggtgcgcaggttccgcacctgatgatgcatggCCtgtg > 2:499223‑M1/93‑98 (MQ=255) ccaggcggcgcgccaggactccgagagcctggccgggctgtccaatgagctggatacgctggtgcgcaggttccgcacctgatgatgcatggCCtgtg < 1:499223‑M1/6‑1 (MQ=255) tgtgGGTATGACTCCACCTCGGCCTACATTGCGGCATTCAAGCAGCTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGcatcat > 1:66961/1‑150 (MQ=255) aTGACTCCACCTCGGCCTACATTGCGGCATTCAAGCAGCTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGc < 1:597733/150‑1 (MQ=255) gACTCCACCTCGGCCTACATTGCGGCATTCAAGCAGCTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGATATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCgg > 2:223030/1‑150 (MQ=255) tCCACCTCGGCCTACATTGCGGCATTCAAGCAGCTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAAc > 2:463226/1‑150 (MQ=255) ggCCTACATTGCGGCATTCAAGCAGCTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCAc < 1:136124/150‑1 (MQ=255) tACATTGCGGCATTCAAGCAGCTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGc < 2:377326/150‑1 (MQ=255) aaGCAACTATTTGGCGCTCAACCGTGGTAATTTAAGGTCTGATTTTCGCTTCCCTGTGCCGGCCCTTTCGCGGCCGTATCCGCGAAAGGGCCGGAACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTg < 1:260737/150‑1 (MQ=255) agcagcTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTgg > 2:600527/1‑150 (MQ=255) cgctggtgcgcaggttccgcacctgatgatgcatggCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAgg < 2:269856‑M1/37‑1 (MQ=255) cgctggtgcgcaggttccgcacctgatgatgcatggCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAgg > 1:269856‑M1/37‑73 (MQ=255) tggtgcgcaggttccgcacctgatgatgcatggCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAg < 2:231982‑M1/36‑1 (MQ=255) tggtgcgcaggttccgcacctgatgatgcatggCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAg > 1:231982‑M1/34‑69 (MQ=255) cGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCgg > 1:471403/1‑150 (MQ=255) gggggTAGTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGa > 2:219280/1‑150 (MQ=255) ggAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCATGCTCTCGGAGTc < 2:66961/150‑1 (MQ=255) gAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCAGCGATAGGGCCGGCCCAGGCCATGCATCATCAGGGGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAACACCGCCGGGCTCTCGGGGTcc > 2:467599/1‑150 (MQ=255) aaGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGTCCTGgcgc > 2:566048/1‑150 (MQ=255) aaGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGTCCTGgcgc < 1:600527/150‑1 (MQ=255) ttttCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGc < 2:442348/59‑1 (MQ=255) ttttCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGc > 1:442348/1‑59 (MQ=255) gTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGTCCTGGCGCGCCGCCTGGGCCAGc > 2:192768/1‑150 (MQ=255) tttCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGc < 2:141637/95‑1 (MQ=255) tttCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGc > 1:141637/1‑95 (MQ=255) | GTTGTCGTCGCTGGCGTTGCTGGAGGCGGGGGAGAATGTGACCGAGGCGGCGCTGGGGTGTGGGTATGACTCCACCTCGGCCTACATTGCGGCATTCAAGCAGCTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGTCCTGGCGCGCCGCCTGGGCCAGC > NC_002947/681125‑681419 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |