New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	681274 =	24 (0.850)	7 (0.300)	6/204	NT	27.5%	intergenic (+11/+58)	PP_0583/PP_0584	AraC family transcriptional regulator/methyl‑accepting chemotaxis transducer
	?	NC_002947	681322 =	17 (0.730)					intergenic (+59/+10)	PP_0583/PP_0584	AraC family transcriptional regulator/methyl‑accepting chemotaxis transducer

GGCGCTGGGGTGTGGGTATGACTCCACCTCGGCCTACATTGCGGCATTCAAGCAGCTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGTCCTGGCGCGCCGCCTGGGCCAGCTCGGCCACCAACTGCGCATCCCCGTGAATCTGGCTGATGTGCCGGTTGATG  >  NC_002947/681173‑681470                                                                                                                                                      |                                                                                                                                                     ggcgCTGGGGTGTGGGTATGACTCCACCTCGGCCTACGTGGCGGCATTCAAGCAGCTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTCTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGc                                                                                                                                                      <  2:623621/150‑1 (MQ=255)           tgtgGGTATGACTCCACCTCGGCCTACATTGCGGCATTCAAGCAGCTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGcatcat                                                                                                                                            >  1:66961/1‑150 (MQ=255)                  aTGACTCCACCTCGGCCTACATTGCGGCATTCAAGCAGCTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGc                                                                                                                                     <  1:597733/150‑1 (MQ=255)                    gACTCCACCTCGGCCTACATTGCGGCATTCAAGCAGCTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGATATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCgg                                                                                                                                   >  2:223030/1‑150 (MQ=255)                       tCCACCTCGGCCTACATTGCGGCATTCAAGCAGCTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAAc                                                                                                                                >  2:463226/1‑150 (MQ=255)                               ggCCTACATTGCGGCATTCAAGCAGCTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCAc                                                                                                                        <  1:136124/150‑1 (MQ=255)                                   tACATTGCGGCATTCAAGCAGCTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGc                                                                                                                    <  2:377326/150‑1 (MQ=255)                                                  aaGCAACTATTTGGCGCTCAACCGTGGTAATTTAAGGTCTGATTTTCGCTTCCCTGTGCCGGCCCTTTCGCGGCCGTATCCGCGAAAGGGCCGGAACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTg                                                                                                     <  1:260737/150‑1 (MQ=255)                                                   agcagcTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTgg                                                                                                    >  2:600527/1‑150 (MQ=255)                                                                        cGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCgg                                                                               >  1:471403/1‑150 (MQ=255)                                                                         gggggTAGTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGa                                                                              >  2:219280/1‑150 (MQ=255)                                                                            ggAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCATGCTCTCGGAGTc                                                                           <  2:66961/150‑1 (MQ=255)                                                                             gAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCAGCGATAGGGCCGGCCCAGGCCATGCATCATCAGGGGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAACACCGCCGGGCTCTCGGGGTcc                                                                          >  2:467599/1‑150 (MQ=255)                                                                                   aaGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGTCCTGgcgc                                                                    >  2:566048/1‑150 (MQ=255)                                                                                   aaGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGTCCTGgcgc                                                                    <  1:600527/150‑1 (MQ=255)                                                                                            ttttCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGc                                                                                                                                                      >  1:442348/1‑59 (MQ=255)                                                                                            ttttCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGc                                                                                                                                                      <  2:442348/59‑1 (MQ=255)                                                                                                  gTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGTCCTGGCGCGCCGCCTGGGCCAGc                                                     >  2:192768/1‑150 (MQ=255)                                                                                                   tttCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGc                                                                                                           >  1:141637/1‑95 (MQ=255)                                                                                                   tttCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGc                                                                                                           <  2:141637/95‑1 (MQ=255)                                                                                                         GTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGTCCTGGCGCGCCGCCTGGGCCAGCTCGGcca                                              >  1:566048‑M1/1‑150 (MQ=255)                                                                                                               GCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCATCAGCGTATCCAGCTCATTGGa                                                                                                   >  2:437319‑M1/1‑91 (MQ=255)                                                                                                               GCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCATCAGCGTATCCAGCTCATTGGa                                                                                                   <  1:437319‑M1/91‑1 (MQ=255)                                                                                                                CCCTTTCGCGGGGTTAGCCACGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGTCCTGGCGCGCCGCCTGGGCCAGCTCGGCCACCAACTg                                       >  2:494761‑M1/1‑150 (MQ=255)                                                                                                                 cctttcgcggataaccccgcgaaagggccggcacaggCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCg                                                                                                                   <  2:269856‑M2/36‑1 (MQ=255)                                                                                                                 cctttcgcggataaccccgcgaaagggccggcacaggCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCg                                                                                                                   >  1:269856‑M2/38‑73 (MQ=255)                                                                                                                 cctttcgcggataaccccgcgaaagggccggcacaggCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGTCCTGGCGCGCCGCCTGGGCCAGCTCgg                                                 <  1:436341‑M2/102‑1 (MQ=255)                                                                                                                 cctttcgcggataaccccgcgaaagggccggcacaggCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGTCCTGGCGCGCCGCCTGGGCCAGCTCgg                                                 >  2:436341‑M2/38‑139 (MQ=255)                                                                                                                 CCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGTCCTGGCGCGCCGCCTGGGCCAGCTCGGCCACCAACTgc                                      >  1:192768‑M1/1‑150 (MQ=255)                                                                                                                 CCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGTCCTGGCGCGCCGCCTGGGCCAGCTCGGCCACCAACTgc                                      <  2:593665‑M1/150‑1 (MQ=255)                                                                                                                  ctttcgcggataaccccgcgaaagggccggcacaggCCATGCATCATCAGGTGCGGAACCTGCGCACCa                                                                                                                      >  1:231982‑M2/37‑69 (MQ=255)                                                                                                                  ctttcgcggataaccccgcgaaagggccggcacaggCCATGCATCATCAGGTGCGGAACCTGCGCACCa                                                                                                                      <  2:231982‑M2/33‑1 (MQ=255)                                                                                                                   tttcgcggataaccccgcgaaagggccggcacaggCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGTCCTGGCGCGCCGCCTGGGCCAGCTCGGCCACCAACTgcgc                                    >  2:692769‑M2/36‑150 (MQ=255)                                                                                                                       GCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGTCCTGGCGCGCCGCCTGGGCCAGCTCGGCCACCAACTGCGCATcc                                <  1:206919‑M1/150‑1 (MQ=255)                                                                                                                        CGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGTCCTGGCGCGCCGCCTGGGCCAGCTCGGCCACCAACTGCGCATccc                               >  1:593665‑M1/1‑150 (MQ=255)                                                                                                                           ggtgacccgcaaaagggccggcacaggCCATGCATCATCAGGTGCGGAACCTGCGCACCCGCGTATCCTGCTCCTTGACCATCCCGCCCAAGCTCGCGTAGTCCTGGCTCGCCGCCTGGGCCAGCTCGGCCACCAACTGCGCATCCCCGt                            <  1:467599‑M2/123‑1 (MQ=255)                                                                                                                                    cgaaagggccggcacaggCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGTCCTGGCGCGCCGCCTGGGCCAGCTCGGCCACCAACTGCGCATCCCCGTGAATCTGGc                   <  2:471403‑M2/132‑1 (MQ=255)                                                                                                                                    cgaaagggccggcacaggCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGTCCTGGCGCGCCGCCTGGGCCAGCTCGGCCACCAACTGCGCATCCCCGTGAATCTGGc                   <  2:206919‑M2/132‑1 (MQ=255)                                                                                                                                         gggcctgcacaggCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGTCCTGGCGCGCCGCCTGGGCCAGCTCGGCCACCAACTGCGCATCCCCGTGAATCTGGCTGAtg              >  2:374104‑M2/14‑150 (MQ=255)                                                                                                                                                cacaggCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGTCCTGGCGCGCCGCCTgg                                                           <  1:499223‑M2/92‑1 (MQ=255)                                                                                                                                                cacaggCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGTCCTGGCGCGCCGCCTgg                                                           >  2:499223‑M2/7‑98 (MQ=255)                                                                                                                                                   aggCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGTCCTGGCGCGCCGCCTGGGCCAGCTCGGCCAGCAACTGCGCATCCCCGTGAATCTGGCTGATGTGCCGGTTGa    >  2:512076‑M2/4‑150 (MQ=255)                                                                                                                                                     gCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGTCCTGGCGCGCCGCCTGGGCCAGCTCGGCCACCAACTgc                                      <  2:154652‑M2/113‑1 (MQ=255)                                                                                                                                                     gCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGTCCTGGCGCGCCGCCTGGGCCAGCTAGGCCACCAACTGCGCATCCCCGTGAATCTGGCTGATGTGCCGGTTGATg  >  1:81278‑M2/2‑150 (MQ=255)                                                                                                                                                     gCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGGCCTGGCGCGCCGCCTGGGCCAGCTCGGCCACCAACTgc                                      >  1:154652‑M2/2‑114 (MQ=255)                                                                                                                                                      |                                                                                                                                                     GGCGCTGGGGTGTGGGTATGACTCCACCTCGGCCTACATTGCGGCATTCAAGCAGCTATTTGGCGCGACACCGGGGGAATTGAAGCTCTGATTTTCGGTTTCCTGTGCCGGCCCTTTCGCGGGGTTATCCGCGAAAGGGCCGGCACAGGCCATGCATCATCAGGTGCGGAACCTGCGCACCAGCGTATCCAGCTCATTGGACAGCCCGGCCAGGCTCTCGGAGTCCTGGCGCGCCGCCTGGGCCAGCTCGGCCACCAACTGCGCATCCCCGTGAATCTGGCTGATGTGCCGGTTGATG  >  NC_002947/681173‑681470

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.