New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3749840 =	23 (0.820)	3 (0.110)	3/232	NT	13.1%	coding (60/372 nt)	PP_3313	heat shock protein
	?	NC_002947	3749877 =	18 (0.680)					coding (23/372 nt)	PP_3313	heat shock protein

AGTCGTGCGCGGCGAAACTGAAACCCAAACACTGCTGCCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3749882‑3749840 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgcgcACGACTGCTTGCTTGTCGTTCATGGTGATTCCTCCTTCAAACCTTTGCTGTTACTGGATGACTATACGCTTGGGCTGCAGCGCTTCCCGCCGCGGCAGGGAAATGCGCAGGACGCCGTCGCGGTAGTGGGCCTCGACCTTGTCGGT  >  NC_002947/3749877‑3750022                                                                                                                                                                                               AGTCGTGCGCGGCGAAACTGAAACCCAAACACTGCTGCCGCGCACGACTGCTTGCTTGTCGTTCATGGTGATTCCTCCTTCAAACCTTTGCTGTTACTGGATGACTATACGCTTGGGCTGCAGCGCTTCCCGCCGCGGCAG                                                  >  1:70253/1‑141 AGTCGTGCGCGGCGAAACTGAAACCCAAACACTGCTGCCGCGCACGACTGCTTGCTTGTCGTTCATGGTGATTCCTCCTTCAAACCTTTGCTGTTACTGGATGACTATACGCTTGGGCTGCAGCGCTTCCCGCCGCGGCAG                                                  <  2:70253/141‑1    CGTGCGCGGCGAAACTGAAACCCAAACACTGCTGCCGCGCACGACTGCTTGCTTGTCGTTCATGGTGATTCCTCCTTCAAACCTTTGCTGTTACTGGATGACTATACGCTTGGGCTGCAGCGCTTCCCGCCGCGGCAGGGAAATGCGCAG                                      >  2:337817/1‑150                                        GCGCACGACTGCTTGCTTGTCGTTCATGGTGATTCCTCCTTCAAACCTTTGCTGTTACTGGATGACTATACGCTTGGGCTGCAGCGCTTCCCGCCGCGGCAGGGAAATGCGCAGGACGCCGTCGCGGTAGTGGGCCTCGACCTTGTCGGT  >  1:238559/1‑150                                                                                                                                                                                               AGTCGTGCGCGGCGAAACTGAAACCCAAACACTGCTGCCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3749882‑3749840 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgcgcACGACTGCTTGCTTGTCGTTCATGGTGATTCCTCCTTCAAACCTTTGCTGTTACTGGATGACTATACGCTTGGGCTGCAGCGCTTCCCGCCGCGGCAGGGAAATGCGCAGGACGCCGTCGCGGTAGTGGGCCTCGACCTTGTCGGT  >  NC_002947/3749877‑3750022

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.