New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3749840 =	23 (0.820)	3 (0.110)	3/232	NT	13.1%	coding (60/372 nt)	PP_3313	heat shock protein
	?	NC_002947	3749877 =	18 (0.680)					coding (23/372 nt)	PP_3313	heat shock protein

GCCTCCAGCTGTTCGGACAACTGCGGCATGATCTCCCCTTCCAGCACCAGCGTGTCACCCTCCACATTGACCACGAGATGATCCTTGGGCCCCCCGGGAAAGTCGGCAAACAGCTGGATTCCGTTTTCGTCTTCGAAGACATCGACGCGCGGCAGCAGTGTTTGGGTTTCAGTTTCGCCGCGCACGACTGCTTGCTTGTCGTTCATGGTGATTCCTCCTTCAAACCTTTGCTGTTACTGGATGACTATACGCTTGGGCTGCAGCGCTTCCCGCCGCGGCAGGGAAATGCGCA  >  NC_002947/3749694‑3749985                                                                                                                                                   |                                                                                                                                                  accgacaaggtcgaggcccactaccgcgacggcgtcctgcgcatttccctgccgcggcgggaagcgctgcagcccaagcgtatagtcatccagtaacagcaaaggtttgaaggaggaatcaccatgaacgacaagcaagcagtcgtgcgc                                                                                                                                                >  1:238559‑M1/147‑150 (MQ=255)      cAGCTGTTCGGACAACTGCGGCATGATCTCCCCTTCCAGCACCAGCGTGTCACCCTCCACATTGACCACGAGATGATCCTTGGGCCCCCCGGGAAAGTCGGCAAACAGCTGGATTCCGTTTTCGTCTTCGAAGACATCGACGCGCGgcag                                                                                                                                           <  1:243363/150‑1 (MQ=255)        gCTGTTCGGACAACTGCGGCATGATCTCCCCTTCCAGCACCAGCGTGTCACCATCCACATTGACCACGAGATGATCCTTGGGCCCCCCGGGAAAGTCGGCAAACAGCTGGATTCCGTTTTCGTCTTCGAAGACATCGACGCGCGgcagca                                                                                                                                         <  2:250785/150‑1 (MQ=255)                gACAACTGCGGCATGATCTCCCCTTCCAGCACCAGCGTGTCACCCTCCACATTGACCACGAGATGATCCTTGGGCCCCCCGGGAAAGTCGGCAAACAGCTGGATTCCGTTTTCGTCTTCGAAGACATCGACGCGCGGCAGCAGTGTTTgg                                                                                                                                 <  1:557073/150‑1 (MQ=255)                     ccgCGGCATGATCTCCCCGTCCAGCACCAGCGTGTCACCCTCCACAGTGACCACGAGATGTTCCTTGGGCCCCCCGGGAAAGTCGGCAAACAGCTGGATTCCGTTTTCGTCTTCGAAGACATCGACGCGCGGCAGCAGTGTTTGGGTTTc                                                                                                                            <  1:312711/148‑1 (MQ=255)                          gCATGATCTCCCCTTCCAGCACCAGCGTGTCACCCTCCACATTGACCACGAGATGATCCTTGGGCCCCCCGGGAAAGTCGGCAAACAGCTGGATTCCGTTTTCGTCTTCGAAGACATCGACGCGCGGCAGCAGTGTTTg                                                                                                                                  >  1:525401/1‑139 (MQ=255)                          gCATGATCTCCCCTTCCAGCACCAGCGTGTCACCCTCCACATTGACCACGAGATGATCCTTGGGCCCCCCGGGAAAGTCGGCAAACAGCTGGATTCCGTTTTCGTCTTCGAAGACATCGACGCGCGGCAGCAGTGTTTg                                                                                                                                  <  2:525401/139‑1 (MQ=255)                              gATCTCCCCTTCCAGCACCAGCGTGTCACCCTCCACATTGACCACGAGATGATCCTTGGGCCCCCCGGGAAAGTCGGCAAACAGCTGGATTCCGTTTTCGTCTTCGAAGACATCGACGCGCGGCAGCAGTGTTTGGGTTTCAGTTTcgcc                                                                                                                   >  1:216341/1‑150 (MQ=255)                                  tcCCCTTCCAGCACCAGCGTGTCACCCTCCACATTGACCACGAGATGATCCTTGGGCCCCCCGGGAAAGTCGGCCAACAGCTGGATTCCGTTTTCGTCTTCGAAGACATCGACGCGCGGCACCAGTGTTTGGGTTTCAGTTTCGCCgcgc                                                                                                               >  2:251560/1‑150 (MQ=255)                                    cccTTCCAGCACCAGCGTGTCACCCTCCACATTGACCACGAGATGATGCTTGGGCCCCCCGGGAAAGTCGGCAAACAGCTGGATTCCGTTTTCGTCTTCGAAGACATCGACGCGCGGCAGCAGTGTTTGGGTTTCAGTTTCGCCGCGCAc                                                                                                             >  1:548528/1‑150 (MQ=255)                                     ctgcgcatttccctgccgcggcgggaagcgctgcagcccaagcgtatagtcatccagtaacagcaaaggtttgaaggaggaatcaccatgaacgacaagcaagcagtcgtGCGCGGCAGCAGTGTTTGGGTTTCAGTTTCGCCGCGCACg                                                                                                            >  2:337817‑M1/111‑150 (MQ=255)                                           aGCACCAGCGTGTCACCCTCCACATTGACCACGAGATGATCCTTGGGCCCCCCGGGAAAGTCGGCAAACAGCTGGATTCCGTTTTCGTCTTCGAAGACATCGACGCGCGGCAGCAGTGTTTGGGTTTCAGTTTCGCCGCGCACGACtgct                                                                                                      >  2:37029/1‑150 (MQ=255)                                                 ctgccgcggcgggaagcgctgcagcccaagcgtatagtcatccagtaacagcaaaggtttgaaggaggaatcaccatgaacgacaagcaagcagtcgtGCGCGGCAGCAGTGTTTGGGTTTCAGTTTCGCCGCGCACGACt                                                                                                         <  2:70253‑M1/43‑1 (MQ=255)                                                 ctgccgcggcgggaagcgctgcagcccaagcgtatagtcatccagtaacagcaaaggtttgaaggaggaatcaccatgaacgacaagcaagcagtcgtGCGCGGCAGCAGTGTTTGGGTTTCAGTTTCGCCGCGCACGACt                                                                                                         >  1:70253‑M1/99‑141 (MQ=255)                                                  gCGTGTCACCCTCCACATTGACCACGAGATGATCCTTGGGCCCCCCGGGAAAGTCGGCAAACAGCTGGATTCCGTTTTCGTCTTCGAAGACATCGACGCGCGGCAGCAGTGTTTGGGTTTCAGTTTCGCCGCGCACGACTGCTTGCTTGt                                                                                               >  1:17984/1‑150 (MQ=255)                                                             tCCACATTGACCACGAGATGATCCTTGGGCCCCCCGGGAAAGTCGGCAAACAGCTGGATTCCGTTTTCGTCTTCGAAGACATCGACGCGCGGCAGCAGTGTTTgg                                                                                                                                 >  2:660544/1‑105 (MQ=255)                                                             tCCACATTGACCACGAGATGATCCTTGGGCCCCCCGGGAAAGTCGGCAAACAGCTGGATTCCGTTTTCGTCTTCGAAGACATCGACGCGCGGCAGCAGTGTTTgg                                                                                                                                 <  1:660544/105‑1 (MQ=255)                                                                     gACCACGAGATGATCCTTGGGCCCCCCGGGAAAGTCGGCAAACAGCTGGATTCCGTTTTCGTCTTCGAAGACATCGACGCGCGGCAGCAGTGTTTGGGTTTCAGTTTCGCCGCGCACGACTGCTTGCTTGTCGTTCATGGTGATtcctcc                                                                            <  1:37029/150‑1 (MQ=255)                                                                         aCGAGATGATCCTTGGGCCCCCCGGGAAAGTCGGCAAACAGCTGGATTCCGTTTTCGTCTTCGAAGACATCGACGCGCGGCAGCAGTGTTTGGGTTTCAGTTTCGCCGCGCACGACTGCTTGCTTGTCGTTCATGGTGATTCCTCCTTCa                                                                        >  2:745132/1‑150 (MQ=255)                                                                                gatCCTTGGGCCCCCCGGGAAAGTCGGCAAACAGCTGGATTCCGTTTTCGTCTTCGAAGACATCGACGCGCGGCAGCAGTGTTTGGGTTTCAGTTTCGCCGCGCACGACTGCTTGCTTGTCGTTCATGGTGATTCCTCCTTCACACCttt                                                                 >  2:207198/1‑150 (MQ=255)                                                                                          ccccccGGGAAAGTCGGCAAACAGCTGGATTCCGTTTTCGTCTTCGAAGACATCGACGCGCGGCAGCAGTGTTTGGGTTTCAGTTTCGCCGCGCACGACTGCTTGCTTGTCGTTCATGGTGATTCCTCCTTCAAACCTTTGCTGTTACTg                                                       <  2:216341/150‑1 (MQ=255)                                                                                                          gCAAACAGCTGGATTCCGTTTTCGTCTTCGAAGACATCGACGCGCGGCAGCAGTGTTTGGGTTTCAGTTTCGCCGCGCACGACTGCTTGCTTGTCGTTCATGGTGATTCCTCCTTCAAACCTTTGCTGTTACTGGAt                                                    >  1:79476/1‑137 (MQ=255)                                                                                                          gCAAACAGCTGGATTCCGTTTTCGTCTTCGAAGACATCGACGCGCGGCAGCAGTGTTTGGGTTTCAGTTTCGCCGCGCACGACTGCTTGCTTGTCGTTCATGGTGATTCCTCCTTCAAACCTTTGCTGTTACTGGAt                                                    <  2:79476/137‑1 (MQ=255)                                                                                                                   tGGATTCCGTTTTCGTCTTCGAAGACATCGACGCGCGGCAGCAGTGTTTGGGTTTCAGTTTCGCCGCGCACGACTGCTTGCTTGTCGTTCATGGTGATTCCTCCTTCAAACCTTTGCTGTTACTGGATGACTATACGCTTGGGCTGCAgc                              <  2:548528/150‑1 (MQ=255)                                                                                                                       ttCCGTTTTCGTCTTCGAAGACATCGACGCGCGGCAGCAGTGTTTGGGTTTCAGTTTCGCCGCGCACGACTGCTTGCTTGTCGTTCATGGTGATTCCTCCTTCAAACCTTTGCTGTTACTGGATGACTATACGCTTGGGCTGCAGCGCtt                          >  2:452201/1‑150 (MQ=255)                                                                                                                               tCGTCTTCGAAGACATCGACGCGCGGCAGCAGTGTTTGGGTTTCAGTTTCGCCGCGCACGACTGCTTGCTTGTCGTTCATGGTGATTCCTCCTTCAAACCTTTGCTGTTACTGGATGACTATACGCTTGGGCTGCAGCGCTTCCcgccgc                  <  1:745132/150‑1 (MQ=255)                                                                                                                                             aTCGACGCGCAGCAGCAGTGTTTGGGTTTCAGTTTCGCCGCGCACGACTGCTTGCTTGTCGTTCATGGTGATTCCTCCTTCAAACCTTTGCTGTTACTGGATGACTATACGCTTGGGCTGCAGCGCTTCCCGCCGCGGCAGGGAAATgcg    >  2:627458/1‑150 (MQ=255)                                                                                                                                               cGACGCGCGGCAGCAGTGTTTGGGTTTCAGTTTCGCCGCGCACGACTGCTTGCTTGTCGTTCATGGTGATTCCTCCTTCAAACCTTTGCTGTTACTGGATGACTATACGCTTGGGCTGCAGCGCTTCCCGCCGCGGCAGGGAAATGCGCa  <  2:17984/150‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                  GCCTCCAGCTGTTCGGACAACTGCGGCATGATCTCCCCTTCCAGCACCAGCGTGTCACCCTCCACATTGACCACGAGATGATCCTTGGGCCCCCCGGGAAAGTCGGCAAACAGCTGGATTCCGTTTTCGTCTTCGAAGACATCGACGCGCGGCAGCAGTGTTTGGGTTTCAGTTTCGCCGCGCACGACTGCTTGCTTGTCGTTCATGGTGATTCCTCCTTCAAACCTTTGCTGTTACTGGATGACTATACGCTTGGGCTGCAGCGCTTCCCGCCGCGGCAGGGAAATGCGCA  >  NC_002947/3749694‑3749985

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.