New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3749840 =	23 (0.820)	3 (0.110)	3/232	NT	13.1%	coding (60/372 nt)	PP_3313	heat shock protein
	?	NC_002947	3749877 =	18 (0.680)					coding (23/372 nt)	PP_3313	heat shock protein

CCCTTCCAGCACCAGCGTGTCACCCTCCACATTGACCACGAGATGATCCTTGGGCCCCCCGGGAAAGTCGGCAAACAGCTGGATTCCGTTTTCGTCTTCGAAGACATCGACGCGCGGCAGCAGTGTTTGGGTTTCAGTTTCGCCGCGCACGACTGCTTGCTTGTCGTTCATGGTGATTCCTCCTTCAAACCTTTGCTGTTACTGGATGACTATACGCTTGGGCTGCAGCGCTTCCCGCCGCGGCAGGGAAATGCGCAGGACGCCGTCGCGGTAGTGGGCCTCGACCTTGTCGGT  >  NC_002947/3749729‑3750022                                                                                                                                                     |                                                                                                                                                  cccTTCCAGCACCAGCGTGTCACCCTCCACATTGACCACGAGATGATGCTTGGGCCCCCCGGGAAAGTCGGCAAACAGCTGGATTCCGTTTTCGTCTTCGAAGACATCGACGCGCGGCAGCAGTGTTTGGGTTTCAGTTTCGCCGCGCAc                                                                                                                                                  >  1:548528/1‑150 (MQ=255)  ctgcgcatttccctgccgcggcgggaagcgctgcagcccaagcgtatagtcatccagtaacagcaaaggtttgaaggaggaatcaccatgaacgacaagcaagcagtcgtGCGCGGCAGCAGTGTTTGGGTTTCAGTTTCGCCGCGCACg                                                                                                                                                 >  2:337817‑M1/111‑150 (MQ=255)        aGCACCAGCGTGTCACCCTCCACATTGACCACGAGATGATCCTTGGGCCCCCCGGGAAAGTCGGCAAACAGCTGGATTCCGTTTTCGTCTTCGAAGACATCGACGCGCGGCAGCAGTGTTTGGGTTTCAGTTTCGCCGCGCACGACtgct                                                                                                                                           >  2:37029/1‑150 (MQ=255)              ctgccgcggcgggaagcgctgcagcccaagcgtatagtcatccagtaacagcaaaggtttgaaggaggaatcaccatgaacgacaagcaagcagtcgtGCGCGGCAGCAGTGTTTGGGTTTCAGTTTCGCCGCGCACGACt                                                                                                                                              <  2:70253‑M1/43‑1 (MQ=255)              ctgccgcggcgggaagcgctgcagcccaagcgtatagtcatccagtaacagcaaaggtttgaaggaggaatcaccatgaacgacaagcaagcagtcgtGCGCGGCAGCAGTGTTTGGGTTTCAGTTTCGCCGCGCACGACt                                                                                                                                              >  1:70253‑M1/99‑141 (MQ=255)               gCGTGTCACCCTCCACATTGACCACGAGATGATCCTTGGGCCCCCCGGGAAAGTCGGCAAACAGCTGGATTCCGTTTTCGTCTTCGAAGACATCGACGCGCGGCAGCAGTGTTTGGGTTTCAGTTTCGCCGCGCACGACTGCTTGCTTGt                                                                                                                                    >  1:17984/1‑150 (MQ=255)                                  gACCACGAGATGATCCTTGGGCCCCCCGGGAAAGTCGGCAAACAGCTGGATTCCGTTTTCGTCTTCGAAGACATCGACGCGCGGCAGCAGTGTTTGGGTTTCAGTTTCGCCGCGCACGACTGCTTGCTTGTCGTTCATGGTGATtcctcc                                                                                                                 <  1:37029/150‑1 (MQ=255)                                      aCGAGATGATCCTTGGGCCCCCCGGGAAAGTCGGCAAACAGCTGGATTCCGTTTTCGTCTTCGAAGACATCGACGCGCGGCAGCAGTGTTTGGGTTTCAGTTTCGCCGCGCACGACTGCTTGCTTGTCGTTCATGGTGATTCCTCCTTCa                                                                                                             >  2:745132/1‑150 (MQ=255)                                             gatCCTTGGGCCCCCCGGGAAAGTCGGCAAACAGCTGGATTCCGTTTTCGTCTTCGAAGACATCGACGCGCGGCAGCAGTGTTTGGGTTTCAGTTTCGCCGCGCACGACTGCTTGCTTGTCGTTCATGGTGATTCCTCCTTCACACCttt                                                                                                      >  2:207198/1‑150 (MQ=255)                                                       ccccccGGGAAAGTCGGCAAACAGCTGGATTCCGTTTTCGTCTTCGAAGACATCGACGCGCGGCAGCAGTGTTTGGGTTTCAGTTTCGCCGCGCACGACTGCTTGCTTGTCGTTCATGGTGATTCCTCCTTCAAACCTTTGCTGTTACTg                                                                                            <  2:216341/150‑1 (MQ=255)                                                                       gCAAACAGCTGGATTCCGTTTTCGTCTTCGAAGACATCGACGCGCGGCAGCAGTGTTTGGGTTTCAGTTTCGCCGCGCACGACTGCTTGCTTGTCGTTCATGGTGATTCCTCCTTCAAACCTTTGCTGTTACTGGAt                                                                                         <  2:79476/137‑1 (MQ=255)                                                                       gCAAACAGCTGGATTCCGTTTTCGTCTTCGAAGACATCGACGCGCGGCAGCAGTGTTTGGGTTTCAGTTTCGCCGCGCACGACTGCTTGCTTGTCGTTCATGGTGATTCCTCCTTCAAACCTTTGCTGTTACTGGAt                                                                                         >  1:79476/1‑137 (MQ=255)                                                                                tGGATTCCGTTTTCGTCTTCGAAGACATCGACGCGCGGCAGCAGTGTTTGGGTTTCAGTTTCGCCGCGCACGACTGCTTGCTTGTCGTTCATGGTGATTCCTCCTTCAAACCTTTGCTGTTACTGGATGACTATACGCTTGGGCTGCAgc                                                                   <  2:548528/150‑1 (MQ=255)                                                                                    ttCCGTTTTCGTCTTCGAAGACATCGACGCGCGGCAGCAGTGTTTGGGTTTCAGTTTCGCCGCGCACGACTGCTTGCTTGTCGTTCATGGTGATTCCTCCTTCAAACCTTTGCTGTTACTGGATGACTATACGCTTGGGCTGCAGCGCtt                                                               >  2:452201/1‑150 (MQ=255)                                                                                            tCGTCTTCGAAGACATCGACGCGCGGCAGCAGTGTTTGGGTTTCAGTTTCGCCGCGCACGACTGCTTGCTTGTCGTTCATGGTGATTCCTCCTTCAAACCTTTGCTGTTACTGGATGACTATACGCTTGGGCTGCAGCGCTTCCcgccgc                                                       <  1:745132/150‑1 (MQ=255)                                                                                                          agtcgtgcgcggcgaaactgaaacccaaacactgctgccgcgcACGACTGCTTGCTTGTCGTTCATGGTGATTCCTCCTTCAAACCTTTGCTGTTACTGGATGACTATACGCTTGGGCTGCAGCGCTTCCCGCCGCGGCAg                                                  >  1:70253‑M2/44‑141 (MQ=255)                                                                                                          agtcgtgcgcggcgaaactgaaacccaaacactgctgccgcgcACGACTGCTTGCTTGTCGTTCATGGTGATTCCTCCTTCAAACCTTTGCTGTTACTGGATGACTATACGCTTGGGCTGCAGCGCTTCCCGCCGCGGCAg                                                  <  2:70253‑M2/98‑1 (MQ=255)                                                                                                          aTCGACGCGCAGCAGCAGTGTTTGGGTTTCAGTTTCGCCGCGCACGACTGCTTGCTTGTCGTTCATGGTGATTCCTCCTTCAAACCTTTGCTGTTACTGGATGACTATACGCTTGGGCTGCAGCGCTTCCCGCCGCGGCAGGGAAATgcg                                         >  2:627458/1‑150 (MQ=255)                                                                                                            cGACGCGCGGCAGCAGTGTTTGGGTTTCAGTTTCGCCGCGCACGACTGCTTGCTTGTCGTTCATGGTGATTCCTCCTTCAAACCTTTGCTGTTACTGGATGACTATACGCTTGGGCTGCAGCGCTTCCCGCCGCGGCAGGGAAATGCGCa                                       <  2:17984/150‑1 (MQ=255)                                                                                                             cgtgcgcggcgaaactgaaacccaaacactgctgccgcgcACGACTGCTTGCTTGTCGTTCATGGTGATTCCTCCTTCAAACCTTTGCTGTTACTGGATGACTATACGCTTGGGCTGCAGCGCTTCCCGCCGCGGCAGGGAAATGCGCAg                                      >  2:337817‑M2/41‑150 (MQ=255)                                                                                                                       agcagTGTTTGGGTTTCAGTTTCGCCGCGCACGACTGCTTGCTTGTCGTTCATGGTGATTCCTCCTTCAAACCTTTGCTGTTACTGGATGACTATACGCGTGGGCTGCAGCGCTTCCCGCCGCGGCAGGGAAATGCGCAGGACGCCGTcg                            >  1:458368/1‑150 (MQ=255)                                                                                                                                    tttCAGTTTCGCCGCGCACGACTGCTTGCTTGTCGTTCATGGTTATTCCTCCTTCAAACCTTTGCTGTTACTGGATGACTATACGCTTGGGCTGCAGCGCTTCCCGCCGCGGCAGGGAAATGCGCAGGACGCCGTCGCGGTAGTGGGCCt               <  1:123102/150‑1 (MQ=255)                                                                                                                                    tttCAGTTTCGCCGCGCACGACTGCTTGCTTGTCGTTCATGGTGATTCCTCCTTCAAACCTTTGCTGTTACTGGATGACTATACGCTTGGGCTGCAGCGCTTCCCGCCGCGGCAGGGAAATGCGCGGGACGCCGTCGCGGTAGTGGGCCt               >  1:122319/1‑150 (MQ=255)                                                                                                                                       cAGTTTCGCCGCGCACGACTGCTTGCTTGTCGTTCATGGTGATTCCTCCTTCAAACCTTTGCTGTTACTGGATGACTATACGCTTGGGCTGCAGCGCTTCCCGCCGCGGCAGGGAAATGCGCAGGACGCCGTCGCGGTAGTGGGCCTCGa            <  1:627458/150‑1 (MQ=255)                                                                                                                                        aGTGTCGCCTCGCACGACTGCTTGCTTGTACTTCATGGTGATTCCTCCTTCAAACCTTTGCTGTTACTGGATGACTATACGCTTGGGCTGCAGCGCTTCCCGCCGCGGCAGGGAAATGCGCAGGACGCCGTCGCGGTAGTGGGCCTCGAc           <  2:122319/150‑1 (MQ=255)                                                                                                                                            tCGCCGCGCACGACTGCTTGCTTGTCGTTCATGGTGATTCCTCCTTCAAACCTTTGCTGTTACTGGATGACTATACGCTTGGGCTGCAGCGCTTCCCGCCGCGGCAGGGAAATGCGCAGGACGCCGTCGCGGTAGTGGGCCTCGACCTTg       <  1:207198/150‑1 (MQ=255)                                                                                                                                                 gcgcACGACTGCTTGCTTGTCGTTCATGGTGATTCCTCCTTCAAACCTTTGCTGTTACTGGATGACTATACGCTTGGGCTGCAGCGCTTCCCGCCGCGGCAGGGAAATGCGCAGGACGCCGTCGCGGTAGTGGGCCTCGACCTTGTCGGt  >  1:238559‑M2/5‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                  CCCTTCCAGCACCAGCGTGTCACCCTCCACATTGACCACGAGATGATCCTTGGGCCCCCCGGGAAAGTCGGCAAACAGCTGGATTCCGTTTTCGTCTTCGAAGACATCGACGCGCGGCAGCAGTGTTTGGGTTTCAGTTTCGCCGCGCACGACTGCTTGCTTGTCGTTCATGGTGATTCCTCCTTCAAACCTTTGCTGTTACTGGATGACTATACGCTTGGGCTGCAGCGCTTCCCGCCGCGGCAGGGAAATGCGCAGGACGCCGTCGCGGTAGTGGGCCTCGACCTTGTCGGT  >  NC_002947/3749729‑3750022

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.