| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4577865 | 16 (0.570) | 4 (0.150) | 4/236 | NT | 15.9% | intergenic (+30/+79) | PP_4057/glgB | membrane protein/1,4‑alpha‑glucan branching enzyme |
| ? | NC_002947 | = 4577907 | 27 (1.000) | intergenic (+72/+37) | PP_4057/glgB | membrane protein/1,4‑alpha‑glucan branching enzyme | |||||
GTTGATTGGCAGCCTTGGGGTGCGGATGCGGTGGTAGGCAGGGCCGGCCCCTTCGCGGGTAAACCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4577799‑4577865‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccgTTCCTACGCAGGCACCGCACCCGGCGGTGACCCGTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCCCTGCCTACCACCGCATCCGCACCCCAAGGCTGCCAATCAACCCGTTCAGGTCATTGTCATCCACATCACTGCTGTAATCGG < NC_002947/4577907‑4577759 GTTGATTGGCAGCCTTGGGGTGCGGATGCGGTGGTAGGCAGGGCCGGCCCCTTCGCGGGTAAACCCGTTCCTACGCAGGCACCGCACCCGGCGGTGACCCGTGTAGGAGCGGG < 1:136877/113‑1GTTGATTGGCAGCCTTGGGGTGCGGATGCGGTGGTAGGCAGGGCCGGCCCCTTCGCGGGTAAACCCGTTCCTACGCAGGCACCGCACCCGGCGGTGACCCGTGTAGGAGCGGG > 2:136877/1‑113 TTGGCAGCCTTGGGGTGCGGATGCGGTGGTAGGCAGGGCCGGCCCCTTCGCGGGTAAACCCGTTCCTACGCAGGCACCGCACCCGGCGGTGACCCGTGTAG > 1:93111/1‑101 TTGGCAGCCTTGGGGTGCGGATGCGGTGGTAGGCAGGGCCGGCCCCTTCGCGGGTAAACCCGTTCCTACGCAGGCACCGCACCCGGCGGTGACCCGTGTAG < 2:93111/101‑1 CCCGTTCCTACGCAGGCACCGCACCCGGCGGTGACCCGTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCCCTGCCTACCACCGCATCCGCACCCCAAGGCTGCCAATCAACCCGTTCAG < 1:18179/121‑1 CCCGTTCCTACGCAGGCACCGCACCCGGCGGTGACCCGTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCCCTGCCTACCACCGCATCCGCACCCCAAGGCTGCCAATCAACCCGTTCAG > 2:18179/1‑121 GTTCCTACGCAGGCACCGCACCCGGCGGTGACCCGTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCCCTGCCTACCACCGCATCCGCACCCCAAGGCTGCCAATCAACCCGTTCAGGTCATTGTCATCCACATCACTGCTGTAATCGG < 1:617925/150‑1 GTTCCTACGCAGGCACCACACCCGGCGGCGACCCGTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCCCTGCCTACCACCGCATCCGCACCCCAAGGCTGCCAATCACCCCGTTCAGGTCATTGTCATCCACATCACTGCTGTAATCGG < 1:377777/150‑1 GTTGATTGGCAGCCTTGGGGTGCGGATGCGGTGGTAGGCAGGGCCGGCCCCTTCGCGGGTAAACCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4577799‑4577865‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccgTTCCTACGCAGGCACCGCACCCGGCGGTGACCCGTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCCCTGCCTACCACCGCATCCGCACCCCAAGGCTGCCAATCAACCCGTTCAGGTCATTGTCATCCACATCACTGCTGTAATCGG < NC_002947/4577907‑4577759 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |