New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4577865	16 (0.570)	4 (0.150)	4/236	NT	15.9%	intergenic (+30/+79)	PP_4057/glgB	membrane protein/1,4‑alpha‑glucan branching enzyme
	?	NC_002947	= 4577907	27 (1.000)					intergenic (+72/+37)	PP_4057/glgB	membrane protein/1,4‑alpha‑glucan branching enzyme

TGGTGGCGCGGGTGACGCCTTCGGTGGCGTTGTTCGTCAGCGCCGATTACAGCAGTGATGTGGATGACAATGACCTGAACGGGTTGATTGGCAGCCTTGGGGTGCGGATGCGGTGGTAGGCAGGGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAACGGGTCTCCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGTGGC  >  NC_002947/4577717‑4578014                                                                                                                                                     |                                                                                                                                                      tggtggCGCGGGTGACGCCTTCGGTGGCGTTGTTCGTCAGCGCCGATTACAGCAGTGATGTGGATGACAATGACCTGATCTGGTTGATTGGCAGCCTTGGGGTGCGGATGCGGTGGTAGGCAGGGCCGGCCCCTTCGCGGGTAAACCCGc                                                                                                                                                      <  2:519002/150‑1 (MQ=255)                             gttgttCGTCAGCGCCGATTACAGCAGTGATGTGGATGACAATGACCTGAACGGGTTGATTGGCAGCCTTGGGGTGCGGATGCGGTGGTAGGCAGGGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACACGGGTCACCGCCGggtgcggt                                                                                                                          <  1:51446/150‑1 (MQ=255)                                           ccGATTACAGCAGTGATGTGGATGACAATGACCTGAACGGGTTGATTGGCAGCCTTGGGGTGCGGATGCGGTGGTAGGCAGGGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAAc                                                                                                            <  1:617925‑M2/150‑2 (MQ=255)                                           ccGATTACAGCAGTGATGTGGATGACAATGACCTGAACGGGGTGATTGGCAGCCTTGGGGTGCGGATGCGGTGGTAGGCAGGGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACACGGGTCGCCGCCGGGTGTGGTGCCTGCGTAGGAAc                                                                                                            <  1:377777‑M2/150‑2 (MQ=255)                                                   agcagTGATGTGGATGACAATGACCTGAACGGGTTGATTGGCAGCCTTGGGGTGCGGATGCGGTGGTAGGCAGGGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAACGGGTCTcc                                                                                                    >  1:325351/1‑150 (MQ=255)                                                   agcagTGATGTGGATGACAATGACCTGAACGGGTTGATTGGCAGCCTTGGGGTGCGGATGCGGTGGTAGGCAGGGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAACGGGTCTcc                                                                                                    >  1:326231/1‑150 (MQ=255)                                                         gATGTGGATGACAATGACCTGAACGGGTTGATTGGCAGCCTTGGGGTGCGGATGCGGTGGTAGGCAGGGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAACGGGTCTCCCGCGaa                                                                                              >  2:96145/1‑150 (MQ=255)                                                            gtgGATGACAATGACCTGAACGGGTTGATTGGCAGCCTTGGGGTGCGGATGCGGTGGTAGGCAGGGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAACGGGTCTCCCGCGAAAgg                                                                                           >  2:493214/1‑150 (MQ=255)                                                            gtgGATGACAATGACCTGAACGAGTTGATTGGCAGCCTTGGGGTGCGGATGCGGTGGTAGGCAGGGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAACGGGTCTCCCGCGAAAgg                                                                                           <  1:207345/150‑1 (MQ=255)                                                                aTGACAATGACCTGAACGGGTTGATTGGCAGCCTTGGGGTGCGGATGCGGTGGTAGGCAGGGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACACGGCTCACCGCCGGGTGCGGTGCCTGCGTAGGAACGGGCCTCCCGCGAAAAGGCCa                                                                                       >  2:76283/1‑150 (MQ=255)                                                                     aaTGACCTGAACGGGTTGATTGGCAGCCTTGGGGTGCGGATGCGGTGGTAGGCAGGGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAACGGGTCTCCCGCGAAAGGGCCAGTACa                                                                                  >  2:537907/1‑150 (MQ=255)                                                                           cTGAACGGGTTGATTGGCAGCCTTGGGGTGCGGATGCGGTGGTAGGCAGGGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAAcggg                                                                                                         <  1:18179‑M2/121‑5 (MQ=255)                                                                           cTGAACGGGTTGATTGGCAGCCTTGGGGTGCGGATGCGGTGGTAGGCAGGGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAAcggg                                                                                                         >  2:18179‑M2/1‑117 (MQ=255)                                                                                   gTTGATTGGCAGCCTTGGGGTGCGGATGCGGTGGTAGGCAGGGCCGGCCCCTTCGCGGGTAAACCCGttcctacgcaggcaccgcacccggcggtgacccgtgtaggagcggg                                                                                                         >  2:136877‑M1/1‑67 (MQ=255)                                                                                   gTTGATTGGCAGCCTTGGGGTGCGGATGCGGTGGTAGGCAGGGCCGGCCCCTTCGCGGGTAAACCCGttcctacgcaggcaccgcacccggcggtgacccgtgtaggagcggg                                                                                                         <  1:136877‑M1/113‑47 (MQ=255)                                                                                   gTTGATTGGCAGCCTTGGGGTGCGGATGCGGTGGTAGGCAGGGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACATGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAACGGGTCTCCCGCGAAAGGGCCAGTACAGCCAACCGATCAgg                                                                    >  2:192690/1‑150 (MQ=255)                                                                                        ttGGCAGCCTTGGGGTGCGGATGCGGTGGTAGGCAGGGCCGGCCCCTTCGCGGGTAAACCCGttcctacgcaggcaccgcacccggcggtgacccgtgtag                                                                                                                >  1:93111‑M1/1‑62 (MQ=255)                                                                                        ttGGCAGCCTTGGGGTGCGGATGCGGTGGTAGGCAGGGCCGGCCCCTTCGCGGGTAAACCCGttcctacgcaggcaccgcacccggcggtgacccgtgtag                                                                                                                <  2:93111‑M1/101‑40 (MQ=255)                                                                                             aGCCTTGGGGTGCGGATGCGGTGGTAGGCAGGGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAACGGGTCTCCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCAt                                                          <  1:537907/150‑1 (MQ=255)                                                                                                 ttGGGGTGCGGATGCGGTGGTAGGCAGGGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAACGGGTCTCCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATc                                                      <  2:325351/150‑1 (MQ=255)                                                                                                     ggTGCGGATGCGGTGGTAGGCAGGGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAACGGGTCTCCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAaca                                                  >  2:453915/1‑150 (MQ=255)                                                                                                                        gCAGGGACGGCCCCTTCGCGGATAAACCCGCTCCTACAGGGGTCACCCACGGGTGCGGTGCCTGCGTAGGAACGGGTCTCCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGGTCAACACCCCCAACGGCGGCAGGtt                               >  2:217608/1‑150 (MQ=255)                                                                                                                            ggccggccCCTTCGCGGGTAAACCCGCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAACGGGTCTCCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAgg                           <  2:617925/150‑1 (MQ=255)                                                                                                                              ccggccCCTTCGCGGGTAAACCCGCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAACGGGTCTCCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGc                         <  2:711432/150‑1 (MQ=255)                                                                                                                                     cTTCGCGGGTAAACCCGCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAACGGGTCTCCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGAt                  >  2:611659/1‑150 (MQ=255)                                                                                                                                                  cccGttcctacgcaggcaccgcacccggcggtgacccgtgtaggagcgggtttacccgcgaaggggccggccctgcctaccaccgcatccgcaccccaaggctgccaatcaacccgttcag                                  >  2:18179‑M1/1‑4 (MQ=255)                                                                                                                                                  cccGttcctacgcaggcaccgcacccggcggtgacccgtgtaggagcgggtttacccgcgaaggggccggccctgcctaccaccgcatccgcaccccaaggctgccaatcaacccgttcag                                  <  1:18179‑M1/121‑118 (MQ=255)                                                                                                                                                  cccGCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAAcgggtttacccgcgaaggggccggccctgcctaccaccgcatccgcaccccaaggctgccaatcaac                                          <  1:136877‑M2/113‑68 (MQ=255)                                                                                                                                                  cccGCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAAcgggtttacccgcgaaggggccggccctgcctaccaccgcatccgcaccccaaggctgccaatcaac                                          >  2:136877‑M2/1‑46 (MQ=255)                                                                                                                                                   ccGCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAACGGGTCTCCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGtg    >  1:675067/1‑150 (MQ=255)                                                                                                                                                    cGCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAACGGGTCTCCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGtgg   >  1:496954/1‑150 (MQ=255)                                                                                                                                                     gttcctacgcaggcaccgcacccggcggtgacccgtgtaggagcgggtttacccgcgaaggggccggccctgcctaccaccgcatccgcaccccaaggctgccaatcaacccgttcaggtcattgtcatccacatcactgctgtaatcgg  <  1:617925‑M1/150‑150 (MQ=255)                                                                                                                                                     gttcctacgcaggcaccacacccggcggcgacccgtgtaggagcgggtttacccgcgaaggggccggccctgcctaccaccgcatccgcaccccaaggctgccaatcaccccgttcaggtcattgtcatccacatcactgctgtaatcgg  <  1:377777‑M1/150‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                      TGGTGGCGCGGGTGACGCCTTCGGTGGCGTTGTTCGTCAGCGCCGATTACAGCAGTGATGTGGATGACAATGACCTGAACGGGTTGATTGGCAGCCTTGGGGTGCGGATGCGGTGGTAGGCAGGGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACACGGGTCACCGCCGGGTGCGGTGCCTGCGTAGGAACGGGTCTCCCGCGAAAGGGCCAGTACAGCCAACCGATCAGGCGGGCTTCATGATCAACACCCCCAACGGCGGCAGGTTCAGGGCCAGCGATAATGGCTGCCCGTGGC  >  NC_002947/4577717‑4578014

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.