| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5336775 | 32 (1.140) | 5 (0.180) | 5/238 | NT | 12.5% | coding (177/1443 nt) | PP_4696 | nitrogen regulation protein NR(I) |
| ? | NC_002947 | = 5336801 | 39 (1.430) | coding (203/1443 nt) | PP_4696 | nitrogen regulation protein NR(I) | |||||
GGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5336679‑5336775‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccTG‑GCCGAGCTTGATC‑AGCTCGGTGCCGGGCGCGCCGGGCAGGCGCAGGTCGCTGACGATGAGGTCGAAAGTGGCAATGCTGAAGCGTTCCTGGGCTTCCTGCACCGAGCCGGCCTCGCTGACCTGGTACTGGTTCCGCTCAAGCAGGCG < NC_002947/5336801‑5336653 GGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCTG‑GCCGAGCTTGATC‑AGCTCGGTGCCGGGC > 1:736169/1‑127GGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCTG‑GCCGAGCTTGATC‑AGCTCGGTGCCGGGC < 2:736169/127‑1 TTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGGGTGCCCTG‑GCCGAGCTTGATC‑AGCTCGGTGCCGGGCGCGCCGGGCAGG < 1:2522/99‑1 TTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGGGTGCCCTG‑GCCGAGCTTGATC‑AGCTCGGTGCCGGGCGCGCCGGGCAGG > 2:2522/1‑99 CTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGG‑CCAGGGCGCGCCGGGCAGGCGCAGGTCGCTGACGATGAGGTCGAAAGTGGCAATGCTGAAGCGTTCCTGGGCTTCCTGCACCGAGCCGGCCTCGCTGACCTGGTACTGGTTC > 2:618785/1‑150 CCTG‑GCCGAGCTTGATC‑AGCTCGGTGCCGGGCGCGCCGGGCAGGCGCAGGTCGCTGACGATGAGGTCGAAAGTGGCAATGCTGAAGCGTTCCTG > 1:16905/1‑94 CCTG‑GCCGAGCTTGATC‑AGCTCGGTGCCGGGCGCGCCGGGCAGGCGCAGGTCGCTGACGATGAGGTCGAAAGTGGCAATGCTGAAGCGTTCCTG < 2:16905/94‑1 CTG‑GCCGAGCTTGATC‑AGCTCGGTGCCGGGCGCGCCGGGCAGGCGCAGGTCGCTGACGATGAGGTCGAAAGTGGCAATGCTGAAGCGTTCCTGGGCTTCCTGCACCGAGCCGGCCTCGCTGACCTGGTACTGGTTCCGCTCAAGCAGGCG > 2:452610/1‑150 GGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5336679‑5336775‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccTG‑GCCGAGCTTGATC‑AGCTCGGTGCCGGGCGCGCCGGGCAGGCGCAGGTCGCTGACGATGAGGTCGAAAGTGGCAATGCTGAAGCGTTCCTGGGCTTCCTGCACCGAGCCGGCCTCGCTGACCTGGTACTGGTTCCGCTCAAGCAGGCG < NC_002947/5336801‑5336653 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |