New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5336775	32 (1.140)	5 (0.180)	5/238	NT	12.5%	coding (177/1443 nt)	PP_4696	nitrogen regulation protein NR(I)
	?	NC_002947	= 5336801	39 (1.430)					coding (203/1443 nt)	PP_4696	nitrogen regulation protein NR(I)

TCGCCTGCTTGAGCGGAACCAGTACCAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCTTCGACCACGACGAGATGCTGCAGGCAGTAGCGCGTATTCTGCGTG  >  NC_002947/5336652‑5336941                                                                                                                                                        |                                                                                                                                             tCGCCTGCTTGAGCGGAACCAGTACCAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGAT‑GATCAAGCTCGGC‑Ca                                                                                                                                              <  1:480638/150‑1 (MQ=255) tCGCCTGCTTGAGCGGAACCAGTACCAGGTCAGCGAGGCCAGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTGAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GAGCAAGCTCGGC‑Ca                                                                                                                                              >  1:717348/1‑150 (MQ=255)  cGCCTGCTTGAGCGGAACCAGTACCAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAg                                                                                                                                             >  2:452610‑M2/1‑149 (MQ=255)                gAACCAGTACCAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCTGG‑CCGAGCTTGATCA‑GCTCGGTGCCgggcgcgccgggcag                                                                                                                               >  2:618785‑M2/1‑135 (MQ=255)                      gTACCAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCAt                                                                                                                         >  2:158876/1‑150 (MQ=255)                         ccAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGt                                                                                                                                  >  2:76742/1‑138 (MQ=255)                         ccAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGt                                                                                                                                  <  1:76742/138‑1 (MQ=255)                         ccAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGAc                                                                                                                      >  2:552997/1‑150 (MQ=255)                           aGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCa                                                                                                                    <  2:63459/150‑1 (MQ=255)                            ggTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAg                                                                                                                   <  1:158876/150‑1 (MQ=255)                             gTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGt                                                                                                                  <  2:671443/150‑1 (MQ=255)                              tCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGtt                                                                                                                 >  1:163733/1‑150 (MQ=255)                                 gCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACg                                                                                                              >  2:136774/1‑150 (MQ=255)                                                           cAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAgg                                                                                                                                            <  2:16905‑M2/94‑3 (MQ=255)                                                           cAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAgg                                                                                                                                            >  1:16905‑M2/1‑92 (MQ=255)                                                           cAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGa                                                                                                                       <  1:202177/115‑1 (MQ=255)                                                           cAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGa                                                                                                                       >  2:202177/1‑115 (MQ=255)                                                                    ttCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGTACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATg                                                                           >  1:643155/1‑150 (MQ=255)                                                                    ttCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGc                                                                                                                                <  2:234008/97‑1 (MQ=255)                                                                    ttCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGc                                                                                                                                >  1:234008/1‑97 (MQ=255)                                                                    ttCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATg                                                                           >  1:122498/1‑150 (MQ=255)                                                                             gCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTg                                                                  >  2:68052/1‑150 (MQ=255)                                                                             gCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTg                                                                  <  2:472366/150‑1 (MQ=255)                                                                                aCTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTAAACTAGATGAAAATGGGCGCGGTGGAc                                                               <  2:566652/150‑1 (MQ=255)                                                                                  tttCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTa                                                             >  2:125273/1‑150 (MQ=255)                                                                                      gACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCTGTGGACTCGATGAAAATGGGCGCGGTGGACTACATc                                                         <  2:520298/150‑1 (MQ=255)                                                                                             tCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGc                                                  >  1:599838/1‑150 (MQ=255)                                                                                                   gCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTg                                                                  <  1:237440/128‑1 (MQ=255)                                                                                                   gCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTg                                                                  >  2:237440/1‑128 (MQ=255)                                                                                                     gACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCTTCGAc                                          <  1:68052/150‑1 (MQ=255)                                                                                                             ccTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAgggcaccccgggcaggcgcaggtcgctgacgatgaggtcgaaagtggcaatgctgaa                                                                                     >  2:2522‑M2/1‑42 (MQ=255)                                                                                                             ccTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAgggcaccccgggcaggcgcaggtcgctgacgatgaggtcgaaagtggcaatgctgaa                                                                                     <  1:2522‑M2/99‑58 (MQ=255)                                                                                                               tGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCTTCGACCACGACgaga                                <  1:237122/150‑1 (MQ=255)                                                                                                                         gcCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAgggcgcgccgggcaggcgcaggtcgctgacgatgaggtcgaaagtggcaatgctgaagcgttcctgggcttcctgcaccgagccggcctcgctgacc                                             <  2:736169‑M2/127‑98 (MQ=255)                                                                                                                         gcCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAgggcgcgccgggcaggcgcaggtcgctgacgatgaggtcgaaagtggcaatgctgaagcgttcctgggcttcctgcaccgagccggcctcgctgacc                                             >  1:736169‑M2/1‑30 (MQ=255)                                                                                                                          cccGGCACCGAACT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCTTCGACCACGACGAGATGCTgcaggca                     >  2:559253/1‑150 (MQ=255)                                                                                                                                aCCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTg                                                                  <  2:193275/99‑1 (MQ=255)                                                                                                                                aCCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTg                                                                  >  1:193275/1‑99 (MQ=255)                                                                                                                                 ccGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCTTCGACCACGACGAGATGCTGCAGGCAGTAgcgc              <  2:544519/150‑1 (MQ=255)                                                                                                                                 ccGAGCT‑GATCAAGCTCGGC‑CAGGGCAAACCGGTGCTGCTCCTGACCAGTGACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCTTCGACCACTACGTGATGCTGCAGGCAGTAgcgc              <  2:163733/150‑1 (MQ=255)                                                                                                                                  cGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCTTCGACCACGACGAGATGCTGCAGGCAGTAGcgcg             <  2:717348/150‑1 (MQ=255)                                                                                                                                    aGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCTTCGACCACGACGAGATGCTGCAGGCAGTAGCGCGTa           <  2:611107/150‑1 (MQ=255)                                                                                                                                          aTCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATc                                                         >  1:399315/1‑99 (MQ=255)                                                                                                                                          aTCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATc                                                         <  2:399315/99‑1 (MQ=255)                                                                                                                                            cAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTg                                                                                          >  2:6354/1‑64 (MQ=255)                                                                                                                                            cAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTg                                                                                          <  1:6354/64‑1 (MQ=255)                                                                                                                                              aGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCTTCGACCACGACGAGATGCTGCAGGCAGTAGCGCGTATTCTGCGTg  >  2:445822/1‑150 (MQ=255)                                                                                                                                                 tCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTg                                                                                          <  1:533444/59‑1 (MQ=255)                                                                                                                                                 tCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTg                                                                                          >  2:533444/1‑59 (MQ=255)                                                                                                                                                        |                                                                                                                                             TCGCCTGCTTGAGCGGAACCAGTACCAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCTTCGACCACGACGAGATGCTGCAGGCAGTAGCGCGTATTCTGCGTG  >  NC_002947/5336652‑5336941

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.