New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5336775	32 (1.140)	5 (0.180)	5/238	NT	12.5%	coding (177/1443 nt)	PP_4696	nitrogen regulation protein NR(I)
	?	NC_002947	= 5336801	39 (1.430)					coding (203/1443 nt)	PP_4696	nitrogen regulation protein NR(I)

CATCATCCGCTCGGCCCTGCGTCGCCTGCTTGAGCGGAACCAGTACCAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCTTCGACCACGACGAGATGCTGCAGGCA  >  NC_002947/5336631‑5336922                                                                                                                                                 |                                                                                                                                                      catcatCCGCTCGGCCCTGCGTCGCCTGCTTGAGCGGAACCAGTACCAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCAc                                                                                                                                                  >  1:544519/1‑150 (MQ=255) catcatCCGCTCGGCCCTGCGTCGCCTGCTTGAGCGGAACCAGTACCAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCAc                                                                                                                                                  >  1:348485/1‑150 (MQ=255)      tcCGCTCGGCCCTGCGTCGCCTGCTTGAGCGGAACCAGTACCAGGTCAGCTAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGc                                                                                                                                             <  2:553240/150‑1 (MQ=255)      tcCGCTCGGCCCTGCGTCGCCTGCTTGAGCGGAACCAGTACCAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGc                                                                                                                                             >  1:472366/1‑150 (MQ=255)      tcCGCTCGGCCCTGCGTCGCCTGCTTGAGCGGAACCAGTACCAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGc                                                                                                                                             <  1:25381/150‑1 (MQ=255)              gCCCTGCGTCGCCTGCTTGAGCGGAACCAGTACCAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTTCCCGGCGCGCCCGGCACCGAGCT‑GATCAAg                                                                                                                                    <  1:98265/150‑1 (MQ=255)                 cTGCGTCGCCTGCTTGAGCGGAACCAGTACCAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTc                                                                                                                                 >  1:671443/1‑150 (MQ=255)                      tCGCCTGCTTGAGCGGAACCAGTACCAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGAT‑GATCAAGCTCGGC‑Ca                                                                                                                           <  1:480638/150‑1 (MQ=255)                      tCGCCTGCTTGAGCGGAACCAGTACCAGGTCAGCGAGGCCAGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTGAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GAGCAAGCTCGGC‑Ca                                                                                                                           >  1:717348/1‑150 (MQ=255)                       cGCCTGCTTGAGCGGAACCAGTACCAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAg                                                                                                                          >  2:452610‑M2/1‑149 (MQ=255)                                     gAACCAGTACCAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCTGG‑CCGAGCTTGATCA‑GCTCGGTGCCgggcgcgccgggcag                                                                                                            >  2:618785‑M2/1‑135 (MQ=255)                                           gTACCAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCAt                                                                                                      >  2:158876/1‑150 (MQ=255)                                              ccAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGt                                                                                                               <  1:76742/138‑1 (MQ=255)                                              ccAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGt                                                                                                               >  2:76742/1‑138 (MQ=255)                                              ccAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGAc                                                                                                   >  2:552997/1‑150 (MQ=255)                                                aGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCa                                                                                                 <  2:63459/150‑1 (MQ=255)                                                 ggTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCtggccgagcttgatcagctcggtgccgggc                                                                                                                         <  2:736169‑M1/127‑31 (MQ=255)                                                 ggTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCtggccgagcttgatcagctcggtgccgggc                                                                                                                         >  1:736169‑M1/1‑97 (MQ=255)                                                 ggTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAg                                                                                                <  1:158876/150‑1 (MQ=255)                                                  gTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGt                                                                                               <  2:671443/150‑1 (MQ=255)                                                   tCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGtt                                                                                              >  1:163733/1‑150 (MQ=255)                                                      gCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACg                                                                                           >  2:136774/1‑150 (MQ=255)                                                                                cAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAgg                                                                                                                         >  1:16905‑M2/1‑92 (MQ=255)                                                                                cAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAgg                                                                                                                         <  2:16905‑M2/94‑3 (MQ=255)                                                                                cAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGa                                                                                                    <  1:202177/115‑1 (MQ=255)                                                                                cAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGa                                                                                                    >  2:202177/1‑115 (MQ=255)                                                                                         ttCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGGGTGCCCtggccgagcttgatcagctcggtgccgggcgcgccgggcagg                                                                                                             <  1:2522‑M1/99‑43 (MQ=255)                                                                                         ttCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGGGTGCCCtggccgagcttgatcagctcggtgccgggcgcgccgggcagg                                                                                                             >  2:2522‑M1/1‑57 (MQ=255)                                                                                         ttCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGTACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATg                                                        >  1:643155/1‑150 (MQ=255)                                                                                         ttCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGc                                                                                                             >  1:234008/1‑97 (MQ=255)                                                                                         ttCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGc                                                                                                             <  2:234008/97‑1 (MQ=255)                                                                                         ttCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATg                                                        >  1:122498/1‑150 (MQ=255)                                                                                                  gCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTg                                               <  2:472366/150‑1 (MQ=255)                                                                                                  gCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTg                                               >  2:68052/1‑150 (MQ=255)                                                                                                     aCTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTAAACTAGATGAAAATGGGCGCGGTGGAc                                            <  2:566652/150‑1 (MQ=255)                                                                                                       tttCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTa                                          >  2:125273/1‑150 (MQ=255)                                                                                                           gACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCTGTGGACTCGATGAAAATGGGCGCGGTGGACTACATc                                      <  2:520298/150‑1 (MQ=255)                                                                                                                  tCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGc                               >  1:599838/1‑150 (MQ=255)                                                                                                                        gCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTg                                               <  1:237440/128‑1 (MQ=255)                                                                                                                        gCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTg                                               >  2:237440/1‑128 (MQ=255)                                                                                                                          gACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCTTCGAc                       <  1:68052/150‑1 (MQ=255)                                                                                                                                  ccTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAgggcaccccgggcaggcgcaggtcgctgacgatgaggtcgaaagtggcaatgctgaa                                                                  >  2:2522‑M2/1‑42 (MQ=255)                                                                                                                                  ccTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAgggcaccccgggcaggcgcaggtcgctgacgatgaggtcgaaagtggcaatgctgaa                                                                  <  1:2522‑M2/99‑58 (MQ=255)                                                                                                                                   cTGCCCGGCGCGCCCggcaccgagctgatcaagctcggccagggcgcgccgggcaggcgcaggtcgctgacgatgaggtcgaaagtggcaatgctgaagcgttcctgggcttcctgcaccgagccggcctcgctgacctggtactggttc                >  2:618785‑M1/1‑15 (MQ=255)                                                                                                                                    tGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCTTCGACCACGACgaga             <  1:237122/150‑1 (MQ=255)                                                                                                                                              gcCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAgggcgcgccgggcaggcgcaggtcgctgacgatgaggtcgaaagtggcaatgctgaagcgttcctgggcttcctgcaccgagccggcctcgctgacc                          <  2:736169‑M2/127‑98 (MQ=255)                                                                                                                                              gcCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAgggcgcgccgggcaggcgcaggtcgctgacgatgaggtcgaaagtggcaatgctgaagcgttcctgggcttcctgcaccgagccggcctcgctgacc                          >  1:736169‑M2/1‑30 (MQ=255)                                                                                                                                               cccGGCACCGAACT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCTTCGACCACGACGAGATGCTgcaggca  >  2:559253/1‑150 (MQ=255)                                                                                                                                                cctggccgagcttgatcagctcggtgccgggcgcgccgggcaggcgcaggtcgctgacgatgaggtcgaaagtggcaatgctgaagcgttcctg                                                           >  1:16905‑M1/1‑2 (MQ=255)                                                                                                                                                cctggccgagcttgatcagctcggtgccgggcgcgccgggcaggcgcaggtcgctgacgatgaggtcgaaagtggcaatgctgaagcgttcctg                                                           <  2:16905‑M1/94‑93 (MQ=255)                                                                                                                                                 ctggccgagcttgatcagctcggtgccgggcgcgccgggcaggcgcaggtcgctgacgatgaggtcgaaagtggcaatgctgaagcgttcctgggcttcctgcaccgagccggcctcgctgacctggtactggttccgctcaagcaggcg  >  2:452610‑M1/1‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                      CATCATCCGCTCGGCCCTGCGTCGCCTGCTTGAGCGGAACCAGTACCAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGCT‑GATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCTTCGACCACGACGAGATGCTGCAGGCA  >  NC_002947/5336631‑5336922

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.