New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5365099 =	27 (0.960)	3 (0.110)	3/230	NT	11.1%	coding (1505/1914 nt)	ftsH	integral membrane ATP‑dependent zinc metallopeptidase
	?	NC_002947	5365130 =	23 (0.870)					coding (1474/1914 nt)	ftsH	integral membrane ATP‑dependent zinc metallopeptidase

ATGGCGTGACCACTGGCGCGTCCAACGACATCATGCGCGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5365141‑5365099 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgccagTGGTCACGCCATCGAAGCCCAAGGTCATCTCCTCGGCGATACGGCCGCCATACAGCGAGCAGATCTGGCTGATCAGCGCACGCTTGGAGAGGCTGTAGCGGTCTTCTTCCGGCAGGAACATGGTCACACCCAAGGCACGACCACGCGGG  >  NC_002947/5365130‑5365278                                                                                                                                                                                                  ATGGCGTGACCACTGGCGCGTCCAACGACATCATGCGCGCCAGTGGTCACGCCATCGAAGCCCAAGGTCATCACCTCGGCGATACGGCCGCCATACAGCGAGCAGATCTGGCTGATCAGCGCACGCTTGGAGAGGCTGTAGCGGTCTTCT                                            >  1:30652/1‑150          CCACTGGCGCGTCCAACGACATCATGCGCGCCAGTGGTCACGCCATCGAAGCCCAAGGTCATCTCCTCGGCGATACGGCCGCCATACAGCGAGCAGATCTGGCTGATCAGCGCACGCTTGGAGAGGC                                                          <  1:675441/127‑1          CCACTGGCGCGTCCAACGACATCATGCGCGCCAGTGGTCACGCCATCGAAGCCCAAGGTCATCTCCTCGGCGATACGGCCGCCATACAGCGAGCAGATCTGGCTGATCAGCGCACGCTTGGAGAGGC                                                          >  2:675441/1‑127                                        CCAGTGGTCACGCCATCGAAGCCCAAGGTCATCTCCTCGGCGATACGGCCGCCATACAGCGAGCAGATCTGGCTGATCAGCGCACGCTTGGAGAGGCTGTAGCGGTCTTCTTCCGGCAGGAACATGGTCACACCCAAGGCACGACCACGC     <  1:556292/150‑1                                          AGTGGTCACGCCATCGAAGCCCAAGGTCATCACCTCGGCGATACGGCCGCCATACAGCGAGCAGATCTGGCTGATCAGCGCACGCTTGGAGAGGCTGTAGCGGTCTTCTTCCGGCAGGAACATGGTCACACCCAAGGCACGACCACGCGG   <  2:30652/150‑1                                           GTGGTCACGCCATCGAAGCCCAAGGTCATCTCCTCGGCGATACGGCCGCCATACAGCGAGCAGATCTGGCTGATCAGCGCACGCTTGGAGAGGCTGTAGCGGTCTTCTTCCGGCAGGAACATGGTCACACCCAAGGCACGACCACGCGGG  >  1:388229/1‑150                                                                                                                                                                                                  ATGGCGTGACCACTGGCGCGTCCAACGACATCATGCGCGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5365141‑5365099 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgccagTGGTCACGCCATCGAAGCCCAAGGTCATCTCCTCGGCGATACGGCCGCCATACAGCGAGCAGATCTGGCTGATCAGCGCACGCTTGGAGAGGCTGTAGCGGTCTTCTTCCGGCAGGAACATGGTCACACCCAAGGCACGACCACGCGGG  >  NC_002947/5365130‑5365278

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.