New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5365099 =	27 (0.960)	3 (0.110)	3/230	NT	11.1%	coding (1505/1914 nt)	ftsH	integral membrane ATP‑dependent zinc metallopeptidase
	?	NC_002947	5365130 =	23 (0.870)					coding (1474/1914 nt)	ftsH	integral membrane ATP‑dependent zinc metallopeptidase

CGATCAATTTGGCAGTCTCGCCGGACACGCTGGCATGCTGGCTACCGGCACTGCGGCCGAGGAACACCTCGCCCTCTTCCTCTGCATACATCAGCGGGCCGAGCTTCTCGGACAGGCCCCATTTGGTCACCATGTTACGAGCGAGCTGGCTGGCGCGCATGATGTCGTTGGACGCGCCAGTGGTCACGCCATCGAAGCCCAAGGTCATCTCCTCGGCGATACGGCCGCCATACAGCGAGCAGATCTGGCTGATCAGCGCACGCTTGGAGAGGCTGTAGCGGTCTTCTTCCG  >  NC_002947/5364950‑5365240                                                                                                                                                      |                                                                                                                                              cccgcgtggtcgtgccttgggtgtgaccatgttcctgccggaagaagaccgctacagcctctccaagcgtgcgctgatcagccagatctgctcgctgtatggcggccgtatcgccgaggagatgaccttgggcttcgatggcgtgaccac                                                                                                                                               >  1:388229‑M1/150‑150 (MQ=255)  ccgcgtggtcgtgccttgggtgtgaccatgttcctgccggaagaagaccgctacagcctctccaagcgtgcgctgatcagccagatctgctcgctgtatggcggccgtatcgccgaggtgatgaccttgggcttcgatggcgtgaccaCt                                                                                                                                              <  2:30652‑M1/2‑1 (MQ=255)    gcgtggtcgtgccttgggtgtgaccatgttcctgccggaagaagaccgctacagcctctccaagcgtgcgctgatcagccagatctgctcgctgtatggcggccgtatcgccgaggagatgaccttgggcttcgatggcgtgaccaCTgg                                                                                                                                            <  1:556292‑M1/4‑1 (MQ=255)          tGGCAGTCTCGCCGGACACGCTGGCATGCTGGCTACCGGCACTGCGGCCGAGGAACACCTCGCCCTCTTCCTCTGCATACATCAGCGGGCCGAGCTTCTCGGACAGGCCCCATTTGGTCACCATGTTACGAGCGAGCTGGCTGGCGCGCa                                                                                                                                      <  2:393013/150‑1 (MQ=255)                tctcGCCGGACACGCTGGCATGCTGGCTACCGGCACTGCGGCCGAGGAACACCTCGCCCTCTTCCTCTGCATACATCAGCGGGCCGAGCTTCTCGGACAGGCCCCATTTGGTCACCATGTTACGAGCGAGCTGGCTGGCGCGCATGATGt                                                                                                                                >  2:354316/1‑150 (MQ=255)                  tcGCCGGACACGCTGGCATGCTGGCTACCGGCACTGCGGCCGAGGAACACCTCGCCCTCTTCCTCTGCATACATCAGCGGGCCGAGCTTCTCGGACAGGCCCCATTTGGTCACCATGTTACGAGCGAGCTGGCTGGCGCGCATGATGTCg                                                                                                                              >  2:109136/1‑150 (MQ=255)                               tGGCATGCTGGCTACCGGCACTGCGGCCGAGGAACACCTCGCCCTCTTCCTCTGCATACATCAGCGGGCCGAGCTTCTCGGACAGGCCCCATTTGGTCACCATGTTACGAGCGAGCTGGCTGGCGCGCATGATGTCGTTGGACGCGCCAg                                                                                                                 >  1:553557/1‑150 (MQ=255)                                 gCATGCTGGCTACCGGCACTGCGGCCGAGGAACACCTCGCCCTCTTCCTCTGCATACATCAGCGGGCCGAGCTTCTCGGACAGGCCCCATTTGGTCACCATGTTACGAGCGAGCTGGCTGGCGCGCATGATGTCGTTGGACGCGCCAGTg                                                                                                               <  1:354316/150‑1 (MQ=255)                                           agaagaccgctacagcctctccaagcgtgcgctgatcagccagatctgctcgctgtatggcggccgtatcgccgaggtgatgaccttgggcttcgatggcgtgaccaCTGGCGCGCATGATGTCGTTGGACGCGCCAGTGGTCACGCCAt                                                                                                     >  1:30652‑M1/108‑150 (MQ=255)                                                gCACTGCGGCCGAGGAACACCTCGCCCTCTTCCTCTGCATACATCAGCGGGCCGAGCTTCTCGGACAGGCCCCATTTGGTCACCATGTTACGAGCGAGCTGGCTGGCGCGCATGATGTCGTTGGACGCGCCAGTGGTCACGCCATCGAAg                                                                                                <  1:109136/150‑1 (MQ=255)                                                gCACTGCGGCCGAGGAACACCTCGCCCTCTTCCTCTGCATACATCAGCGGGCCGAGCTTCTCGGACAGGCCCCATTTGGTCACCATGTTACGAGCGAGCTGGCTGGCGCGCATGATGTCGTTGGACGCGCCAGTGGTCACGCCATCGAAg                                                                                                <  2:472270/150‑1 (MQ=255)                                                         gcctctccaagcgtgcgctgatcagccagatctgctcgctgtatggcggccgtatcgccgaggagatgaccttgggcttcgatggcgtgaccaCTGGCGCGCATGATGTCGTTGGACGCGCCAGTgg                                                                                                              >  2:675441‑M1/94‑127 (MQ=255)                                                         gcctctccaagcgtgcgctgatcagccagatctgctcgctgtatggcggccgtatcgccgaggagatgaccttgggcttcgatggcgtgaccaCTGGCGCGCATGATGTCGTTGGACGCGCCAGTgg                                                                                                              <  1:675441‑M1/34‑1 (MQ=255)                                                                  acCTCGCCCTCTTCCTCTGCATACATCAGCGGGCCGAGCTTCTCGGACAGGCCCCATTTGGTCACCATGTTACGAGCGAGCTGGCTGGCGCGCATGATGTCGTTGGACGCGCCAGTGGTCACGCCATCGAAGCCCAAg                                                                                          >  2:447675/1‑138 (MQ=255)                                                                  acCTCGCCCTCTTCCTCTGCATACATCAGCGGGCCGAGCTTCTCGGACAGGCCCCATTTGGTCACCATGTTACGAGCGAGCTGGCTGGCGCGCATGATGTCGTTGGACGCGCCAGTGGTCACGCCATCGAAGCCCAAg                                                                                          <  1:447675/138‑1 (MQ=255)                                                                    cTCGCCCTCTTCCTCTGCATACATCAGCGGGCCGAGCTTCTCGGACAGGCCCCATTTGGTCACCATGTTACGAGCGAGCTGGCTGGCGCGCATGATGTCGTTGGACGCGCCAGTGGTCACGCCATCGAAGCCCAAGGTCATCTCCTCGGc                                                                            >  1:135918/1‑150 (MQ=255)                                                                          ctctTCCTCTGCATACATCAGCGGGCCGAGCTTCTCGGACAGGCCCCATTTGGTCACCATGTTACGAGCGAGCTGGCTGGCGCGCATGATGTCGTTGGACGCGCCAGTGGTCACGCCATCGAAGCCCAAGGTCATCTCCTCGGCGATACg                                                                      >  1:626895/1‑150 (MQ=255)                                                                           tctTCCTCTGCATACATCAGCGGGCCGAGCTTCTCCGACAGGCCCCATTTGGTCACCATGTTACGAGCGAGCTGGCTGGCGCGCATGATGTCGTTGGACGCGCCAGTGGTCACGCCATCGAAGCCCAAGGTCATCCCCTCTGcactccgg                                                                     >  2:138573/1‑143 (MQ=255)                                                                                ctctGCATACATCAGCGGGCCGAGCTTCTCGGACAGGCCCCATTTGGTCACCATGTTACGAGCGAGCTGGCTGGCGCGCATGATGTCGTTGGACGCGCCAGTGGTCACGCCATCGAAGCCCAAGGTCATCTCCTCGGCGATACGgccgcc                                                                >  1:286261/1‑150 (MQ=255)                                                                                    gCATACATCAGCGGGCCGAGCTTCTCGGACAGGCCCCATTTGGTCACCATGTTACGAGCGAGCTGGCTGGCGCGCATGATGTCGtt                                                                                                                            >  1:630649/1‑86 (MQ=255)                                                                                    gCATACATCAGCGGGCCGAGCTTCTCGGACAGGCCCCATTTGGTCACCATGTTACGAGCGAGCTGGCTGGCGCGCATGATGTCGtt                                                                                                                            <  2:630649/86‑1 (MQ=255)                                                                                     cATACATCAGCGGGCCGAGCTTCTCGGACAGGCCCCATTTGGTCACCATGTTACGAGCGAGCTGGCTGGCGCGCATGATGTCGTTGGACGCGCCAGTGGTCACGCCATCGAAGCCCAAGGTCATCTCCTCGGCGATACGGCCGCCATACa                                                           >  2:597663/1‑150 (MQ=255)                                                                                     cATACATCAGCGGGCAGAGCTTCTCGGACAGGCCCCATTTGGTCACCATGTTACGAGCGAGCTGGCTGGCGCGCATGATGTCGTTGGACGCGCCAGTGGTCACGCCATCGAAGCCCAAGGTCATCTCCTCGGCGATACGGCCGCCATACa                                                           <  1:73978/150‑1 (MQ=255)                                                                                                    cGAGCTTCTCGGACAGGCCCCATTTGGTCACCATGTTACGAGCGAGCTGGCTGGCGCGCATGATGTCGTTGGACGCGCCAGTGGTCACGCCATCGAAGCCCAAGGTCATCTCCTCGGCGATACGGCCGCCATACAGCGAGCAGATCTGGc                                            <  1:188337/150‑1 (MQ=255)                                                                                                     gAGCTTCTCGGACAGGCCCCATTTGGTCACCATGTTACGAGCGAGCTGGCTGGCGCGCATGATGTCGTTGGACGCGCCAGTGGTCACGCCATCGAAGCCCAAGGTCATCTCCTCGGCGATACGGCCGCCATACAGCGAGCAGATCTGGCt                                           >  2:556292/1‑150 (MQ=255)                                                                                                             cGGACAGGCCCCATTTGGTCACCATGTTACGAGCGAGCTGGCTGGCGCGCATGATGTCGTTGGACGCGCCAGTGGTCACGCCATCGAAGCCCAAGGTCATCTCCTCGGCGATACGGCCGCCATACAGCGAGCAGATCTGGCTGATCAgcg                                   <  1:426599/150‑1 (MQ=255)                                                                                                                     ccccATTTGGTCACCATGTTACGAGCGAGCTGGCTGGCGCGCATGATGTCGTTGGACGCGCCAGTGGTCACGCCATCGAAGCCCAAGGTCATCTCCTCGGc                                                                            >  1:491772/1‑101 (MQ=255)                                                                                                                     ccccATTTGGTCACCATGTTACGAGCGAGCTGGCTGGCGCGCATGATGTCGTTGGACGCGCCAGTGGTCACGCCATCGAAGCCCAAGGTCATCTCCTCGGc                                                                            <  2:491772/101‑1 (MQ=255)                                                                                                                                cACCATGTTACGAGCGAGCTGGCTGGCGCGCATGATGTCGTTGGACGCGCCAGTGGTCACGCCATCGAAGCCCAAGGTCATCTCCTCGGCGATACGGCCGCCATACAGCGAGCAGATCTGGCTGATCAGCGCACGCTTGGAGAGGCTGTa                <  2:626895/150‑1 (MQ=255)                                                                                                                                   cATGTTACGAGCGAGCTGGCTGGCGCGCATGATGTCGTTGGACGCGCCAGTGGTCACGCCATCGAAGCCCAAGGTCATCTCCTCGGCGATACGGCCGCCATACAGCGAGCAGATCTGGCTGATCAGCGCACGCTTGGAGAGGCTGTAGCg             <  2:286261/150‑1 (MQ=255)                                                                                                                                        tACGAGCGAGCTGGCTGGCGCGCATGATGTCGTTGGACGCGCCAGTGGTCACGCCATCGAAGCCCAAGGTCATCTCCTCGGCGATACGGCCGCCATACAGCGAGCAGATCTGGCTGATCAGCGCACGCTTGGAGAGGCTGTAGCGGtctt        <  2:135918/150‑1 (MQ=255)                                                                                                                                             gcgagcTGGCTGGCGCGCATGATGTCGTTGGACGCGCCAGTGGTCACGCCATCGAAGCCCAAGGTCATCTCCTCGGCGATACGGCCGCCATACAGCGAGCAGATCTGGCTGATCAGCGCACGCTTGGAGAGGCTGTAGCGGTCTTCTTcc   >  1:615531/1‑150 (MQ=255)                                                                                                                                              cgagcTGGCTGGCGCGCATGATGTCGTTGGACGCGCCAGTGGTCACGCCATCGAAGCCCAAGGTCATCTCCTCGGCGATACGGCCGCCATACAGCGAGCAGATCTGGCTGATCAGCGCACGCTTGGAGAGGCTGTAGCGGTCTTCTTCCg  <  2:615531/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                              CGATCAATTTGGCAGTCTCGCCGGACACGCTGGCATGCTGGCTACCGGCACTGCGGCCGAGGAACACCTCGCCCTCTTCCTCTGCATACATCAGCGGGCCGAGCTTCTCGGACAGGCCCCATTTGGTCACCATGTTACGAGCGAGCTGGCTGGCGCGCATGATGTCGTTGGACGCGCCAGTGGTCACGCCATCGAAGCCCAAGGTCATCTCCTCGGCGATACGGCCGCCATACAGCGAGCAGATCTGGCTGATCAGCGCACGCTTGGAGAGGCTGTAGCGGTCTTCTTCCG  >  NC_002947/5364950‑5365240

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.