New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5365099 =	27 (0.960)	3 (0.110)	3/230	NT	11.1%	coding (1505/1914 nt)	ftsH	integral membrane ATP‑dependent zinc metallopeptidase
	?	NC_002947	5365130 =	23 (0.870)					coding (1474/1914 nt)	ftsH	integral membrane ATP‑dependent zinc metallopeptidase

GCATGCTGGCTACCGGCACTGCGGCCGAGGAACACCTCGCCCTCTTCCTCTGCATACATCAGCGGGCCGAGCTTCTCGGACAGGCCCCATTTGGTCACCATGTTACGAGCGAGCTGGCTGGCGCGCATGATGTCGTTGGACGCGCCAGTGGTCACGCCATCGAAGCCCAAGGTCATCTCCTCGGCGATACGGCCGCCATACAGCGAGCAGATCTGGCTGATCAGCGCACGCTTGGAGAGGCTGTAGCGGTCTTCTTCCGGCAGGAACATGGTCACACCCAAGGCACGACCACGCGGG  >  NC_002947/5364982‑5365278                                                                                                                                                     |                                                                                                                                                     gCATGCTGGCTACCGGCACTGCGGCCGAGGAACACCTCGCCCTCTTCCTCTGCATACATCAGCGGGCCGAGCTTCTCGGACAGGCCCCATTTGGTCACCATGTTACGAGCGAGCTGGCTGGCGCGCATGATGTCGTTGGACGCGCCAGTg                                                                                                                                                     <  1:354316/150‑1 (MQ=255)           agaagaccgctacagcctctccaagcgtgcgctgatcagccagatctgctcgctgtatggcggccgtatcgccgaggtgatgaccttgggcttcgatggcgtgaccaCTGGCGCGCATGATGTCGTTGGACGCGCCAGTGGTCACGCCAt                                                                                                                                           >  1:30652‑M1/108‑150 (MQ=255)                gCACTGCGGCCGAGGAACACCTCGCCCTCTTCCTCTGCATACATCAGCGGGCCGAGCTTCTCGGACAGGCCCCATTTGGTCACCATGTTACGAGCGAGCTGGCTGGCGCGCATGATGTCGTTGGACGCGCCAGTGGTCACGCCATCGAAg                                                                                                                                      <  2:472270/150‑1 (MQ=255)                gCACTGCGGCCGAGGAACACCTCGCCCTCTTCCTCTGCATACATCAGCGGGCCGAGCTTCTCGGACAGGCCCCATTTGGTCACCATGTTACGAGCGAGCTGGCTGGCGCGCATGATGTCGTTGGACGCGCCAGTGGTCACGCCATCGAAg                                                                                                                                      <  1:109136/150‑1 (MQ=255)                         gcctctccaagcgtgcgctgatcagccagatctgctcgctgtatggcggccgtatcgccgaggagatgaccttgggcttcgatggcgtgaccaCTGGCGCGCATGATGTCGTTGGACGCGCCAGTgg                                                                                                                                                    <  1:675441‑M1/34‑1 (MQ=255)                         gcctctccaagcgtgcgctgatcagccagatctgctcgctgtatggcggccgtatcgccgaggagatgaccttgggcttcgatggcgtgaccaCTGGCGCGCATGATGTCGTTGGACGCGCCAGTgg                                                                                                                                                    >  2:675441‑M1/94‑127 (MQ=255)                                  acCTCGCCCTCTTCCTCTGCATACATCAGCGGGCCGAGCTTCTCGGACAGGCCCCATTTGGTCACCATGTTACGAGCGAGCTGGCTGGCGCGCATGATGTCGTTGGACGCGCCAGTGGTCACGCCATCGAAGCCCAAg                                                                                                                                >  2:447675/1‑138 (MQ=255)                                  acCTCGCCCTCTTCCTCTGCATACATCAGCGGGCCGAGCTTCTCGGACAGGCCCCATTTGGTCACCATGTTACGAGCGAGCTGGCTGGCGCGCATGATGTCGTTGGACGCGCCAGTGGTCACGCCATCGAAGCCCAAg                                                                                                                                <  1:447675/138‑1 (MQ=255)                                    cTCGCCCTCTTCCTCTGCATACATCAGCGGGCCGAGCTTCTCGGACAGGCCCCATTTGGTCACCATGTTACGAGCGAGCTGGCTGGCGCGCATGATGTCGTTGGACGCGCCAGTGGTCACGCCATCGAAGCCCAAGGTCATCTCCTCGGc                                                                                                                  >  1:135918/1‑150 (MQ=255)                                          ctctTCCTCTGCATACATCAGCGGGCCGAGCTTCTCGGACAGGCCCCATTTGGTCACCATGTTACGAGCGAGCTGGCTGGCGCGCATGATGTCGTTGGACGCGCCAGTGGTCACGCCATCGAAGCCCAAGGTCATCTCCTCGGCGATACg                                                                                                            >  1:626895/1‑150 (MQ=255)                                           tctTCCTCTGCATACATCAGCGGGCCGAGCTTCTCCGACAGGCCCCATTTGGTCACCATGTTACGAGCGAGCTGGCTGGCGCGCATGATGTCGTTGGACGCGCCAGTGGTCACGCCATCGAAGCCCAAGGTCATCCCCTCTGcactccgg                                                                                                           >  2:138573/1‑143 (MQ=255)                                                ctctGCATACATCAGCGGGCCGAGCTTCTCGGACAGGCCCCATTTGGTCACCATGTTACGAGCGAGCTGGCTGGCGCGCATGATGTCGTTGGACGCGCCAGTGGTCACGCCATCGAAGCCCAAGGTCATCTCCTCGGCGATACGgccgcc                                                                                                      >  1:286261/1‑150 (MQ=255)                                                     cATACATCAGCGGGCCGAGCTTCTCGGACAGGCCCCATTTGGTCACCATGTTACGAGCGAGCTGGCTGGCGCGCATGATGTCGTTGGACGCGCCAGTGGTCACGCCATCGAAGCCCAAGGTCATCTCCTCGGCGATACGGCCGCCATACa                                                                                                 >  2:597663/1‑150 (MQ=255)                                                     cATACATCAGCGGGCAGAGCTTCTCGGACAGGCCCCATTTGGTCACCATGTTACGAGCGAGCTGGCTGGCGCGCATGATGTCGTTGGACGCGCCAGTGGTCACGCCATCGAAGCCCAAGGTCATCTCCTCGGCGATACGGCCGCCATACa                                                                                                 <  1:73978/150‑1 (MQ=255)                                                                    cGAGCTTCTCGGACAGGCCCCATTTGGTCACCATGTTACGAGCGAGCTGGCTGGCGCGCATGATGTCGTTGGACGCGCCAGTGGTCACGCCATCGAAGCCCAAGGTCATCTCCTCGGCGATACGGCCGCCATACAGCGAGCAGATCTGGc                                                                                  <  1:188337/150‑1 (MQ=255)                                                                     gAGCTTCTCGGACAGGCCCCATTTGGTCACCATGTTACGAGCGAGCTGGCTGGCGCGCATGATGTCGTTGGACGCGCCAGTGGTCACGCCATCGAAGCCCAAGGTCATCTCCTCGGCGATACGGCCGCCATACAGCGAGCAGATCTGGCt                                                                                 >  2:556292/1‑150 (MQ=255)                                                                             cGGACAGGCCCCATTTGGTCACCATGTTACGAGCGAGCTGGCTGGCGCGCATGATGTCGTTGGACGCGCCAGTGGTCACGCCATCGAAGCCCAAGGTCATCTCCTCGGCGATACGGCCGCCATACAGCGAGCAGATCTGGCTGATCAgcg                                                                         <  1:426599/150‑1 (MQ=255)                                                                                     ccccATTTGGTCACCATGTTACGAGCGAGCTGGCTGGCGCGCATGATGTCGTTGGACGCGCCAGTGGTCACGCCATCGAAGCCCAAGGTCATCTCCTCGGc                                                                                                                  >  1:491772/1‑101 (MQ=255)                                                                                     ccccATTTGGTCACCATGTTACGAGCGAGCTGGCTGGCGCGCATGATGTCGTTGGACGCGCCAGTGGTCACGCCATCGAAGCCCAAGGTCATCTCCTCGGc                                                                                                                  <  2:491772/101‑1 (MQ=255)                                                                                                cACCATGTTACGAGCGAGCTGGCTGGCGCGCATGATGTCGTTGGACGCGCCAGTGGTCACGCCATCGAAGCCCAAGGTCATCTCCTCGGCGATACGGCCGCCATACAGCGAGCAGATCTGGCTGATCAGCGCACGCTTGGAGAGGCTGTa                                                      <  2:626895/150‑1 (MQ=255)                                                                                                   cATGTTACGAGCGAGCTGGCTGGCGCGCATGATGTCGTTGGACGCGCCAGTGGTCACGCCATCGAAGCCCAAGGTCATCTCCTCGGCGATACGGCCGCCATACAGCGAGCAGATCTGGCTGATCAGCGCACGCTTGGAGAGGCTGTAGCg                                                   <  2:286261/150‑1 (MQ=255)                                                                                                        tACGAGCGAGCTGGCTGGCGCGCATGATGTCGTTGGACGCGCCAGTGGTCACGCCATCGAAGCCCAAGGTCATCTCCTCGGCGATACGGCCGCCATACAGCGAGCAGATCTGGCTGATCAGCGCACGCTTGGAGAGGCTGTAGCGGtctt                                              <  2:135918/150‑1 (MQ=255)                                                                                                          atggcgtgaccactggcgcgtccaacgacatcatgcgcgccagTGGTCACGCCATCGAAGCCCAAGGTCATCACCTCGGCGATACGGCCGCCATACAGCGAGCAGATCTGGCTGATCAGCGCACGCTTGGAGAGGCTGTAGCGGtcttct                                            >  1:30652‑M2/44‑150 (MQ=255)                                                                                                             gcgagcTGGCTGGCGCGCATGATGTCGTTGGACGCGCCAGTGGTCACGCCATCGAAGCCCAAGGTCATCTCCTCGGCGATACGGCCGCCATACAGCGAGCAGATCTGGCTGATCAGCGCACGCTTGGAGAGGCTGTAGCGGTCTTCTTcc                                         >  1:615531/1‑150 (MQ=255)                                                                                                              cgagcTGGCTGGCGCGCATGATGTCGTTGGACGCGCCAGTGGTCACGCCATCGAAGCCCAAGGTCATCTCCTCGGCGATACGGCCGCCATACAGCGAGCAGATCTGGCTGATCAGCGCACGCTTGGAGAGGCTGTAGCGGTCTTCTTCCg                                        <  2:615531/150‑1 (MQ=255)                                                                                                                   ccactggcgcgtccaacgacatcatgcgcgccagTGGTCACGCCATCGAAGCCCAAGGTCATCTCCTCGGCGATACGGCCGCCATACAGCGAGCAGATCTGGCTGATCAGCGCACGCTTGGAGAGGc                                                          >  2:675441‑M2/35‑127 (MQ=255)                                                                                                                   ccactggcgcgtccaacgacatcatgcgcgccagTGGTCACGCCATCGAAGCCCAAGGTCATCTCCTCGGCGATACGGCCGCCATACAGCGAGCAGATCTGGCTGATCAGCGCACGCTTGGAGAGGc                                                          <  1:675441‑M2/93‑1 (MQ=255)                                                                                                                              cATGATGTCGTTGGACGCGCCAGTGGTCACGCCATCGAAGCCCAAGGTCATCTCCTCGGCGATACGGCCGCCATACAGCGAGCAGATCTTGCTGATCAGCGCACGCTTGGAGATGCTGTAGCGGTCTTCTTCCGGCAGGAACATGGTcac                        >  2:140778/1‑150 (MQ=255)                                                                                                                               atgatgTCGTTGGACGCGCCAGTGGTCACGCCATCGAAGCCCAAGGTCATCTCCTCGGCGATACGGCCGCCATACAGCGAGCAg                                                                                         >  2:209960/1‑84 (MQ=255)                                                                                                                               atgatgTCGTTGGACGCGCCAGTGGTCACGCCATCGAAGCCCAAGGTCATCTCCTCGGCGATACGGCCGCCATACAGCGAGCAg                                                                                         <  1:209960/84‑1 (MQ=255)                                                                                                                                            aCGCGCCAGTGGTCACGCCATCGAAGCCCAAGGTCATCTCCTCGGCGATACGgccgc                                                                                                       >  2:596854/1‑57 (MQ=255)                                                                                                                                            aCGCGCCAGTGGTCACGCCATCGAAGCCCAAGGTCATCTCCTCGGCGATACGgccgc                                                                                                       <  1:596854/57‑1 (MQ=255)                                                                                                                                                 ccagTGGTCACGCCATCGAAGCCCAAGGTCATCTCCTCGGCGATACGGCCGCCATACAGCGAGCAGATCTGGCTGATCAGCGCACGCTTGGAGAGGCTGTAGCGGTCTTCTTCCGGCAGGAACATGGTCACACCCAAGGCACGACCAcgc     <  1:556292‑M2/146‑1 (MQ=255)                                                                                                                                                   agTGGTCACGCCATCGAAGCCCAAGGTCATCACCTCGGCGATACGGCCGCCATACAGCGAGCAGATCTGGCTGATCAGCGCACGCTTGGAGAGGCTGTAGCGGTCTTCTTCCGGCAGGAACATGGTCACACCCAAGGCACGACCACGCgg   <  2:30652‑M2/148‑1 (MQ=255)                                                                                                                                                    gTGGTCACGCCATCGAAGCCCAAGGTCATCTCCTCGGCGATACGGCCGCCATACAGCGAGCAGATCTGGCTGATCAGCGCACGCTTGGAGAGGCTGTAGCGGTCTTCTTCCGGCAGGAACATGGTCACACCCAAGGCACGACCACGCggg  >  1:388229‑M2/2‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                     GCATGCTGGCTACCGGCACTGCGGCCGAGGAACACCTCGCCCTCTTCCTCTGCATACATCAGCGGGCCGAGCTTCTCGGACAGGCCCCATTTGGTCACCATGTTACGAGCGAGCTGGCTGGCGCGCATGATGTCGTTGGACGCGCCAGTGGTCACGCCATCGAAGCCCAAGGTCATCTCCTCGGCGATACGGCCGCCATACAGCGAGCAGATCTGGCTGATCAGCGCACGCTTGGAGAGGCTGTAGCGGTCTTCTTCCGGCAGGAACATGGTCACACCCAAGGCACGACCACGCGGG  >  NC_002947/5364982‑5365278

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.