| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5593015 = | 46 (1.630) | 7 (0.250) | 7/242 | NT | 13.7% | coding (1090/1284 nt) | PP_4921 | NCS1 family transporter |
| ? | NC_002947 | 5593038 = | 43 (1.550) | coding (1067/1284 nt) | PP_4921 | NCS1 family transporter | |||||
CGAAAACTTCCTGTTGCTGATCGGTTCGGTGTTCGCACCGCTGTTCGGCGTGGTGCTGATGGACCAC‑TACGTGGTCCGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5593094‑5593015‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGGCGCCAACAGGGCGATCAGGGTGCACAACACGCCGATGGCCAACGCCAGGTGCTCGACCTTCAGCGGTAGCAGCACAC > NC_002947/5593038‑5593185 CGAAAACTTCCTGTTGCTGATCGGTTCGGTGTTCGCACCGCTGTTCGGCGTGGTGCTGACGGACCACGTA‑GTGGTCCATCAGCACC > 1:517092/1‑86CGAAAACTTCCTGTTGCTGATCGGTTCGGTGTTCGCACCGCTGTTCGGCGTGGTGCTGACGGACCACGTA‑GTGGTCCATCAGCACC < 2:517092/86‑1 ATCGGTTCGGTGTTCGCACCGCTGTTCGGCGTGGTGCTGACGGACCAC‑GTAGTGGTCCATCAGCACCACGCCGAACAGCGGTGC < 1:343429/84‑1 ATCGGTTCGGTGTTCGCACCGCTGTTCGGCGTGGTGCTGACGGACCAC‑GTAGTGGTCCATCAGCACCACGCCGAACAGCGGTGC > 2:343429/1‑84 TGATGGACCAC‑TACGTGGTCCGTCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGGCGCCAACAGGGCGATCAGGGTGCACAACACGCCGATGGCCAACGCCAGGTGCTCG > 2:149551/1‑150 GATGGACCAC‑TACGTGGTCCGTCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGGCGCCAACAGGGCGATCAGGGTGCACAACACGCCGATG > 1:66670/1‑131 GATGGACCAC‑TACGTGGTCCGTCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGGCGCCAACAGGGCGATCAGGGTGCACAACACGCCGATG < 2:66670/131‑1 TCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGGCGCCAACAGGGCGATCAGGGTGCACAACACGCCGATGGCCAACGCCAGGTGCTCGACCTTCAGCGGTAGCAGCACAC < 2:668650/150‑1 CGAAAACTTCCTGTTGCTGATCGGTTCGGTGTTCGCACCGCTGTTCGGCGTGGTGCTGATGGACCAC‑TACGTGGTCCGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5593094‑5593015‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGGCGCCAACAGGGCGATCAGGGTGCACAACACGCCGATGGCCAACGCCAGGTGCTCGACCTTCAGCGGTAGCAGCACAC > NC_002947/5593038‑5593185 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |