New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5593015 =	46 (1.630)	7 (0.250)	7/242	NT	13.7%	coding (1090/1284 nt)	PP_4921	NCS1 family transporter
	?	NC_002947	5593038 =	43 (1.550)					coding (1067/1284 nt)	PP_4921	NCS1 family transporter

ATGCGGGCAGGGTGGCGCCCAGTTCGGGCGCCTTGGCGGCAATCAGGTGATAGGCCACCACTCCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGGCGCCAACAGGGCGATCAGGGTGCACAACACGCCGATGGCCAACGCCAGGTGCTCGACCTTCAGCGGTAGCAGCACAC  >  NC_002947/5592889‑5593185                                                                                                                                                       |                                                                                                                                                    cgagcacctggcgttggccatcggcgtgttgtgcaccctgatcgccctgttggcgccactggcacagtacgaaaacttcctgttgctgatcggttcggtgttcgcaccgctgttcggcgtggtgctGACGGACCACGTA‑GTGGTCCATCa                                                                                                                                                     >  2:149551‑M1/127‑150 (MQ=255)    cGGGCAGGGTGGCGCCCAGTTCGGGCGCCTTGGCGGCAATCAGGTGATAGGCCACCACTCCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGca                                                                                                                                                  <  1:243957/150‑1 (MQ=255)           ggTGGCGCCCAGTTCGGGCGCCTTGGCGGCAATCAGGTGATAGGCCACCACTCCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGCTCCATCAGCACCACGcc                                                                                                                                           >  2:8650/1‑150 (MQ=255)              ggCGCCCAGTTCGGGCGCCTTGGCGGCAATCAGGTGATAGGCCACCACTCCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGaa                                                                                                                                        >  2:411036/1‑150 (MQ=255)              ggCGCCCAGTTCGGGCGCCTTGGCGGCAATCAGGTGATAGGCCACCACTCCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGaa                                                                                                                                        <  2:670936/150‑1 (MQ=255)                     aGTTCGGGCGCCTTGGCGGCAATCAGGTGATAGGCCACCCCTTCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGt                                                                                                                                 <  1:196102/150‑1 (MQ=255)                       ttCGGGCGCCTTGGCGGCAATCAGGTGATAGGCCACCACTCCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGc                                                                                                                               <  2:140242/150‑1 (MQ=255)                          gggCGCCTTGGCGGCAATCAGGTGATAGGCCACCACTCCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGaa                                                                                                                            <  2:1039/150‑1 (MQ=255)                          gggCGCCTTGGCGGCAATCAGGTGATAGGCCACCACTCCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGaa                                                                                                                            >  2:726135/1‑150 (MQ=255)                          gggCGCCTTGGCGGCAATCAGGTGATAGGCCACCACTCCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGaa                                                                                                                            <  2:21067/150‑1 (MQ=255)                              gcCTTGGCGGCAATCAGGTGATAGGCCACCACTCCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACacc                                                                                                                        >  1:100166/1‑150 (MQ=255)                                      ggcAATCAGGTGATAGGCCACCACTCCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGAt                                                                                                                >  2:118785/1‑150 (MQ=255)                                        aaaTCAGGTGATAGGCCACCACTCCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCa                                                                                                              <  2:59276/149‑1 (MQ=255)                                                        caccacTCCGGTACACGAGGCCACCGACGCCCGCCAGTGCAAGCCATGGACCTGGGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTc                                                                                              <  2:421327/150‑1 (MQ=255)                                                        caccacTCCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTc                                                                                              >  2:141547/1‑150 (MQ=255)                                                        caccacTCCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTc                                                                                              <  2:749687/150‑1 (MQ=255)                                                              tCCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGc                                                                                                                                            <  2:178712/98‑1 (MQ=255)                                                              tCCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGc                                                                                                                                            >  1:178712/1‑98 (MQ=255)                                                              tCCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGaa                                                                                                                                        <  1:227315/102‑1 (MQ=255)                                                              tCCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGaa                                                                                                                                        >  2:227315/1‑102 (MQ=255)                                                               cctgTAAACCAGGCCACCAACTCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCAAACACCGAACCGATCAGCAACCGGAAGTTTTCGTACtgt                                                                                       <  2:457435/147‑1 (MQ=255)                                                                cGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACtgtg                                                                                      >  1:44707/1‑150 (MQ=255)                                                                  gTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGcc                                                                                    >  2:436360/1‑150 (MQ=255)                                                                     atccAGGCCTCCCACCCCTTCCAGTGCAAGCCATTGACCTGTCATGCGCTTCGGCGTCGACGGACCACGTA‑GTGGTCCATCACCACCACGTCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGt                                                                                 <  1:457650/148‑1 (MQ=255)                                                                     aaCCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGt                                                                                 <  1:431315/150‑1 (MQ=255)                                                                       cgaaaacttcctgttgctgatcggttcggtgttcgcaccgctgttcggcgtggtgctgacggaccacgtagtggtccatcAGcacc                                                                                                                                                >  1:517092‑M2/81‑86 (MQ=255)                                                                       cgaaaacttcctgttgctgatcggttcggtgttcgcaccgctgttcggcgtggtgctgacggaccacgtagtggtccatcAGcacc                                                                                                                                                <  2:517092‑M2/6‑1 (MQ=255)                                                                         aGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGgcg                                                                             >  2:389799/1‑150 (MQ=255)                                                                         aGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGgcg                                                                             >  1:166346/1‑150 (MQ=255)                                                                              accaACGCCTGCCAGTGCAAGCCGTTGACCTGTGCTGGCAGCCAGCGTAGACGAACAACGTA‑GTGGTCCATCAGAACCACGCCGCACAGCGGTGCGAACACCGAACCGATCAGCAACAGCAAGCTCTCGTAATATGCCAGTAGCGCCAAc                                                                        >  2:95872/1‑150 (MQ=255)                                                                               ccaACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGGCGCCAACa                                                                       <  1:615042/150‑1 (MQ=255)                                                                                          cAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGGCGCCAACAGGGCGATCAgg                                                            <  2:100166/150‑1 (MQ=255)                                                                                          atcggttcggtgttcgcaccgctgttcggcgtggtgctgacggaccacgtagtggtccatcAGCACCACGCCGAACAGCGGTGc                                                                                                                               <  1:343429‑M2/23‑1 (MQ=255)                                                                                          atcggttcggtgttcgcaccgctgttcggcgtggtgctgacggaccacgtagtggtccatcAGCACCACGCCGAACAGCGGTGc                                                                                                                               >  2:343429‑M2/62‑84 (MQ=255)                                                                                               cAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGGCGCCAACAGGGCGATCAGGGTg                                                         <  1:337254/148‑1 (MQ=255)                                                                                               cAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGGCGCCAACAGGGCGATCAGGGTg                                                         >  2:337254/1‑148 (MQ=255)                                                                                                 aGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGGCGcc                                                                           >  1:179278/1‑128 (MQ=255)                                                                                                 aGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGGCGcc                                                                           <  2:179278/128‑1 (MQ=255)                                                                                                  gCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCaa                                                                                                          <  2:120096/96‑1 (MQ=255)                                                                                                  gCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCaa                                                                                                          >  1:120096/1‑96 (MQ=255)                                                                                                        gcaccgctgttcggcgtggtgctGATGGACCACTAC‑GTGGTCCGTCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGAt                                                                                                                >  2:343429‑M1/24‑84 (MQ=255)                                                                                                        gcaccgctgttcggcgtggtgctGATGGACCACTAC‑GTGGTCCGTCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGAt                                                                                                                <  1:343429‑M1/61‑1 (MQ=255)                                                                                                              tgCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGGCGCCAACAGGGCGATCAGGGTGCACAACACGCCGATGGc                                        >  1:425688/1‑150 (MQ=255)                                                                                                                 tGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGGCGCCAACAGGGCGATCAGGGTGCACAACACGCCGATGGCCaa                                     <  1:118785/150‑1 (MQ=255)                                                                                                                        cGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGGCGCCAACAGGGCGATCAGGGTGCACAACACGCCGATGGCCAACGCCAgg                              <  1:411036/150‑1 (MQ=255)                                                                                                                         ggtgctGATGGACCAC‑TACGTGGTCCGTCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCg                                                                                             >  1:517092‑M1/7‑86 (MQ=255)                                                                                                                         ggtgctGATGGACCAC‑TACGTGGTCCGTCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCg                                                                                             <  2:517092‑M1/80‑1 (MQ=255)                                                                                                                               tgatggaccactacgtggtccgtcAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGGCGCCAACAGGGCGATCAGGGTGCACAACACGCCGATGGCCAACGCCAGGTGCTCg                        >  2:149551‑M2/25‑150 (MQ=255)                                                                                                                                gatggaccactacgtggtccgtcAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGGCGCCAACAGGGCGATCAGGGTGCACAACACGCCGATg                                          >  1:66670‑M2/24‑131 (MQ=255)                                                                                                                                gatggaccactacgtggtccgtcAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGGCGCCAACAGGGCGATCAGGGTGCACAACACGCCGATg                                          <  2:66670‑M2/108‑1 (MQ=255)                                                                                                                                   gACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGGCGCCAACAGGGCGATCAGGGTGCACAACACGCCGATGGCCAACGCCAGGTGCTCGACCtt                   >  2:684505/1‑150 (MQ=255)                                                                                                                                    aCCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGGCGCCAACAGGGCGATCAGGGTGCACAACACGCCGATGGCCAACGCCAGGTGCTCGAcc                     <  1:26314/147‑1 (MQ=255)                                                                                                                                    aCCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGGCGCCAACAGGGCGATCAGGGTGCACAACACGCCGATGGCCAACGCCAGGTGCTCGAcc                     >  2:26314/1‑147 (MQ=255)                                                                                                                                     ccACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGGCGCCAACAGGGCGATCAGGGTGCACAACACGCCGATGGCCAACGCCAGGTGCTCGACCTTCa                 <  1:8650/150‑1 (MQ=255)                                                                                                                                      cACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGGCGCCAACAGGGCGATCAGGGTGCACAACACGCCGATGGCCAACGCCAGGTGCTCGACCTTCAg                <  2:83155/150‑1 (MQ=255)                                                                                                                                               ggTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGGCGCCAACAGGGCGATCAGGGTGCACAACACGCCGATGGCCAACGCCAGGTGCTCGACCTTCAGCGGTagca        <  1:141547/150‑1 (MQ=255)                                                                                                                                                 tCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGGCGCCAACAGGGCGATCAGGGTGCACAACACGCCGATGGCCAACGCCAGGTGCTCGACCTTCAGCGGTagcagc      >  1:668650/1‑150 (MQ=255)                                                                                                                                                    aTCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGGCGCCAACAGGGCGATCAGGGTGCACAACACGCCGATGGCCAACGCCAGGTGCTCGACCTTCAGCGGTAGCAGcaca   >  1:15576/1‑150 (MQ=255)                                                                                                                                                    aTCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGGCGCCAACAGGGCGATCAGGGTGCACAACACGCCGATGGCCAACGCCAGGTGCTCGACCTTCAGCGGTAGCAGcaca   >  1:120709/1‑150 (MQ=255)                                                                                                                                                     tcAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGGCGCCAACAGGGCGATCAGGGTGCACAACACGCCGATGGCCAACGCCAGGTGCTCGACCTTCAGCGGTAGCAGCacac  <  2:668650‑M2/148‑1 (MQ=255)                                                                                                                                                       |                                                                                                                                                    ATGCGGGCAGGGTGGCGCCCAGTTCGGGCGCCTTGGCGGCAATCAGGTGATAGGCCACCACTCCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGGCGCCAACAGGGCGATCAGGGTGCACAACACGCCGATGGCCAACGCCAGGTGCTCGACCTTCAGCGGTAGCAGCACAC  >  NC_002947/5592889‑5593185

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.