New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5593015 =	46 (1.630)	7 (0.250)	7/242	NT	13.7%	coding (1090/1284 nt)	PP_4921	NCS1 family transporter
	?	NC_002947	5593038 =	43 (1.550)					coding (1067/1284 nt)	PP_4921	NCS1 family transporter

ATGCAGCACGCCTGCCAGCAGCAATGCGGGCAGGGTGGCGCCCAGTTCGGGCGCCTTGGCGGCAATCAGGTGATAGGCCACCACTCCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGGCGCCAACAGGGCGATCAGGGTGCACAACACGCCGATGGCCAACGCCAGG  >  NC_002947/5592866‑5593157                                                                                                                                                      |                                                                                                                                                atacagcaCGCCTGCCAGCAGCAATGCGGGCAGGGTGGCGCCCAGTTCGGGCGCCTTGGCGGCAATCAGGTGATAGGCCACCACTCCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCg                                                                                                                                                 >  1:749687/4‑150 (MQ=255)  tGCAGCACGCCTGCCAGCAGCAATGCGGGCAGGGTGGCGCCCAGTTCGGGCGCCTTGGCGGCAATCAGGTGATAGGCCACCACTCCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGa                                                                                                                                                <  1:276150/150‑1 (MQ=255)  gtgtgctgctaccgctgaaggtcgagcacctggcgttggccatcggcgtgttgtgcaccctgatcgccctgttggcgccactggcacagtacgaaaacttcctgttgctgatcggttcggtgttcgcaccgctgttcggcgtggtgctGa                                                                                                                                                <  2:668650‑M1/2‑1 (MQ=255)          gCCTGCCAGCAGCAATGCGGGCAGGGTGGCGCCCAGTTCGGGCGCCTTGGCGGCAATCAGGTGATAGGCCACCACTCCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCAc                                                                                                                                        >  2:615042/1‑150 (MQ=255)            cTGCCAGCAGCAATGCGGGCAGGGTGGCGCCCAGTTCGGGCGCCTTGGCGGCAATCAGGTGATAGGCCACCACTCCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGt                                                                                                                                      >  1:83155/1‑150 (MQ=255)            cTGCCAGCAGCAATGCGGGCAGGGTGGCGCCCAGTTCGGGCGCCTTGGCGGCAATCAGGTGATAGGCCACCACTCCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGAAGGAGGAGTCGACGGAACGCGt                                                                                                                                      >  2:418278/1‑150 (MQ=255)            cTGCCAGCAGCAATGCGGGCAGGGTGGCGCCCAGTTCGGGCGCCTTGGCGGAAATCAGGTGATAGGCCACCACTCCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGt                                                                                                                                      >  1:59276/1‑150 (MQ=255)                   cagcaATGCGGGCAGGGTGGCGCCCAGTTCGGGCGCCTTGGCGGCAATCAGGTGATAGGCCACCACTCCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTc                                                                                                                              <  1:418278/150‑1 (MQ=255)                       aaTGCGGGCAGGGTGGCGCCCAGTTCGGGCGCCTTGGCGGCAATCAGGTGATAGGCCACCACTCCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATc                                                                                                                          <  1:605239/150‑1 (MQ=255)                        cgagcacctggcgttggccatcggcgtgttgtgcaccctgatcgccctgttggcgccactggcacagtacgaaaacttcctgttgctgatcggttcggtgttcgcaccgctgttcggcgtggtgctGACGGACCACGTA‑GTGGTCCATCa                                                                                                                         >  2:149551‑M1/127‑150 (MQ=255)                           cGGGCAGGGTGGCGCCCAGTTCGGGCGCCTTGGCGGCAATCAGGTGATAGGCCACCACTCCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGca                                                                                                                      <  1:243957/150‑1 (MQ=255)                                  ggTGGCGCCCAGTTCGGGCGCCTTGGCGGCAATCAGGTGATAGGCCACCACTCCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGCTCCATCAGCACCACGcc                                                                                                               >  2:8650/1‑150 (MQ=255)                                     ggCGCCCAGTTCGGGCGCCTTGGCGGCAATCAGGTGATAGGCCACCACTCCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGaa                                                                                                            >  2:411036/1‑150 (MQ=255)                                     ggCGCCCAGTTCGGGCGCCTTGGCGGCAATCAGGTGATAGGCCACCACTCCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGaa                                                                                                            <  2:670936/150‑1 (MQ=255)                                          catcggcgtgttgtgcaccctgatcgccctgttggcgccactggcacagtacgaaaacttcctgttgctgatcggttcggtgttcgcaccgctgttcggcgtggtgctGACGGACCACGTA‑GTGGTCCATc                                                                                                                          <  2:66670‑M1/23‑1 (MQ=255)                                          catcggcgtgttgtgcaccctgatcgccctgttggcgccactggcacagtacgaaaacttcctgttgctgatcggttcggtgttcgcaccgctgttcggcgtggtgctGACGGACCACGTA‑GTGGTCCATc                                                                                                                          >  1:66670‑M1/109‑131 (MQ=255)                                            aGTTCGGGCGCCTTGGCGGCAATCAGGTGATAGGCCACCCCTTCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGt                                                                                                     <  1:196102/150‑1 (MQ=255)                                              ttCGGGCGCCTTGGCGGCAATCAGGTGATAGGCCACCACTCCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGc                                                                                                   <  2:140242/150‑1 (MQ=255)                                                 gggCGCCTTGGCGGCAATCAGGTGATAGGCCACCACTCCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGaa                                                                                                >  2:726135/1‑150 (MQ=255)                                                 gggCGCCTTGGCGGCAATCAGGTGATAGGCCACCACTCCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGaa                                                                                                <  2:1039/150‑1 (MQ=255)                                                 gggCGCCTTGGCGGCAATCAGGTGATAGGCCACCACTCCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGaa                                                                                                <  2:21067/150‑1 (MQ=255)                                                     gcCTTGGCGGCAATCAGGTGATAGGCCACCACTCCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACacc                                                                                            >  1:100166/1‑150 (MQ=255)                                                             ggcAATCAGGTGATAGGCCACCACTCCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGAt                                                                                    >  2:118785/1‑150 (MQ=255)                                                               aaaTCAGGTGATAGGCCACCACTCCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCa                                                                                  <  2:59276/149‑1 (MQ=255)                                                                         aTAGGCCACCACTCCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATc                                                                                                                          >  1:198788/1‑100 (MQ=255)                                                                         aTAGGCCACCACTCCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATc                                                                                                                          <  2:198788/100‑1 (MQ=255)                                                                               caccacTCCGGTACACGAGGCCACCGACGCCCGCCAGTGCAAGCCATGGACCTGGGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTc                                                                  <  2:421327/150‑1 (MQ=255)                                                                               caccacTCCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTc                                                                  >  2:141547/1‑150 (MQ=255)                                                                               caccacTCCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTc                                                                  <  2:749687/150‑1 (MQ=255)                                                                                     tCCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGc                                                                                                                <  2:178712/98‑1 (MQ=255)                                                                                     tCCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGc                                                                                                                >  1:178712/1‑98 (MQ=255)                                                                                     tCCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGaa                                                                                                            >  2:227315/1‑102 (MQ=255)                                                                                     tCCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGaa                                                                                                            <  1:227315/102‑1 (MQ=255)                                                                                      cctgTAAACCAGGCCACCAACTCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCAAACACCGAACCGATCAGCAACCGGAAGTTTTCGTACtgt                                                           <  2:457435/147‑1 (MQ=255)                                                                                       cGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACtgtg                                                          >  1:44707/1‑150 (MQ=255)                                                                                         gTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGcc                                                        >  2:436360/1‑150 (MQ=255)                                                                                            atccAGGCCTCCCACCCCTTCCAGTGCAAGCCATTGACCTGTCATGCGCTTCGGCGTCGACGGACCACGTA‑GTGGTCCATCACCACCACGTCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGt                                                     <  1:457650/148‑1 (MQ=255)                                                                                            aaCCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGt                                                     <  1:431315/150‑1 (MQ=255)                                                                                                aGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGgcg                                                 >  1:166346/1‑150 (MQ=255)                                                                                                aGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGgcg                                                 >  2:389799/1‑150 (MQ=255)                                                                                                     accaACGCCTGCCAGTGCAAGCCGTTGACCTGTGCTGGCAGCCAGCGTAGACGAACAACGTA‑GTGGTCCATCAGAACCACGCCGCACAGCGGTGCGAACACCGAACCGATCAGCAACAGCAAGCTCTCGTAATATGCCAGTAGCGCCAAc                                            >  2:95872/1‑150 (MQ=255)                                                                                                      ccaACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGGCGCCAACa                                           <  1:615042/150‑1 (MQ=255)                                                                                                                 cAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGGCGCCAACAGGGCGATCAgg                                <  2:100166/150‑1 (MQ=255)                                                                                                                      cAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGGCGCCAACAGGGCGATCAGGGTg                             >  2:337254/1‑148 (MQ=255)                                                                                                                      cAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGGCGCCAACAGGGCGATCAGGGTg                             <  1:337254/148‑1 (MQ=255)                                                                                                                        aGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGGCGcc                                               <  2:179278/128‑1 (MQ=255)                                                                                                                        aGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGGCGcc                                               >  1:179278/1‑128 (MQ=255)                                                                                                                         gCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCaa                                                                              <  2:120096/96‑1 (MQ=255)                                                                                                                         gCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCaa                                                                              >  1:120096/1‑96 (MQ=255)                                                                                                                               gcaccgctgttcggcgtggtgctGATGGACCACTAC‑GTGGTCCGTCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGAt                                                                                    >  2:343429‑M1/24‑84 (MQ=255)                                                                                                                               gcaccgctgttcggcgtggtgctGATGGACCACTAC‑GTGGTCCGTCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGAt                                                                                    <  1:343429‑M1/61‑1 (MQ=255)                                                                                                                                     tgCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGGCGCCAACAGGGCGATCAGGGTGCACAACACGCCGATGGc            >  1:425688/1‑150 (MQ=255)                                                                                                                                        tGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGGCGCCAACAGGGCGATCAGGGTGCACAACACGCCGATGGCCaa         <  1:118785/150‑1 (MQ=255)                                                                                                                                               cGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGGCGCCAACAGGGCGATCAGGGTGCACAACACGCCGATGGCCAACGCCAgg  <  1:411036/150‑1 (MQ=255)                                                                                                                                                ggtgctGATGGACCAC‑TACGTGGTCCGTCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCg                                                                 <  2:517092‑M1/80‑1 (MQ=255)                                                                                                                                                ggtgctGATGGACCAC‑TACGTGGTCCGTCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCg                                                                 >  1:517092‑M1/7‑86 (MQ=255)                                                                                                                                                      |                                                                                                                                                ATGCAGCACGCCTGCCAGCAGCAATGCGGGCAGGGTGGCGCCCAGTTCGGGCGCCTTGGCGGCAATCAGGTGATAGGCCACCACTCCGGTAAACCAGGCCACCAACGCCTGCCAGTGCAAGCCATTGACCTGTGCTGGCAGACGGCGTCGACGGACCACGTA‑GTGGTCCATCAGCACCACGCCGAACAGCGGTGCGAACACCGAACCGATCAGCAACAGGAAGTTTTCGTACTGTGCCAGTGGCGCCAACAGGGCGATCAGGGTGCACAACACGCCGATGGCCAACGCCAGG  >  NC_002947/5592866‑5593157

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.