New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5995262 =	45 (1.600)	4 (0.150)	4/238	NT	8.6%	coding (1826/1983 nt)	PP_5252	hypothetical protein
	?	NC_002947	5995293 =	41 (1.500)					coding (1795/1983 nt)	PP_5252	hypothetical protein

ATGAAGAGGCGATCAAGGGCATCGAGTCGGTGCTGACCATCGTTGATGGCAAGGTGGTGTACGGTGCTGGCGAGTTCGACAAGTTTGGCCCACCGCAGGTGCCGGTGCTGCCGGAGTGGTCGCCGGTGACCAAGGTGCC‑TGGGCACTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5995412‑5995262 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTCGAACTCGCCAGCACCGTACACCACCTTGCCATCAACGATGGTCAGCACCGACTCGATGCCCTTGATCGCCTCTTCATCGACACTGAAGAAGTCCAGCGACAATGCT  >  NC_002947/5995293‑5995441                                                                                                                                                                                                                                                                                                               gTGAAGAGGCGATCAAGGGCATCGAGTCGGTGCCGACCATCGTTGATGGCAAGGTGGTGTACGGTGCTGGCGAGTTCGACAAGTTTGGCCCACCGCAGGTGCCGGTGCTGCCGGAGTGGTCGCCGGTGACCAAGGTGCC‑TGGGCACTGGC                                                                                                                                                        <  2:195029/149‑1                                        TCGTTGATGGCAAGGTGGTGTACGGTGCTGGCGAGTTCGACAAGTTTGGCCCACCGCAGGTGCCGGTGCTGCCGGAGTGGTCGCCAGTGCCC‑AGGCACCTTGGTCACCGGCGACCACTCCGGC                                                                                                                                            <  1:278698/123‑1                                        TCGTTGATGGCAAGGTGGTGTACGGTGCTGGCGAGTTCGACAAGTTTGGCCCACCGCAGGTGCCGGTGCTGCCGGAGTGGTCGCCAGTG‑CCCAGGCACCTTGGTCACCGGCGACCACTCCGGC                                                                                                                                            >  2:278698/1‑123                                                                                                                    GTGGTCGCCGGTGACCAAGGTGCC‑TGGGCACTGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTCGAACTCGCCAGCACCGTACACCACCTTGCCATCAACGATGGTCAGCACCGACTCGATGCCCTTGATCGCCT                                     >  1:260680/1‑150                                                                                                                     TGGTCGCCGGTGACCAAGGTGCC‑TGGGCACTGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTCGAACTCGCCAGCACCGTACACCACCTTGCCATCAACGATGGTCAGCACCGACTCGATGCCCTTGATCGCCTC                                    <  2:260680/150‑1                                                                                                                                                        GACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTCGAACTCGCCAGCACCGTACACCACCTTGCCATCAACGATGGTCAGCACCGACTCGATGCCCTTGATCGCCTCTTCATCGACACTGAAGAAGTCCAGCGACAATGCT  <  1:250118/150‑1                                                                                                                                                        GACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTCGAACTCGCCAGCACCGTACACCACCTTGCCATCAACGATGGTCAGCACCGACTCGATGCCCTTGATCGCCTCTTCATC                              >  1:549336/1‑122                                                                                                                                                        GACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTCGAACTCGCCAGCACCGTACACCACCTTGCCATCAACGATGGTCAGCACCGACTCGATGCCCTTGATCGCCTCTTCATC                              <  2:549336/122‑1                                                                                                                                                                                                                                                                                                               ATGAAGAGGCGATCAAGGGCATCGAGTCGGTGCTGACCATCGTTGATGGCAAGGTGGTGTACGGTGCTGGCGAGTTCGACAAGTTTGGCCCACCGCAGGTGCCGGTGCTGCCGGAGTGGTCGCCGGTGACCAAGGTGCC‑TGGGCACTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5995412‑5995262 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTCGAACTCGCCAGCACCGTACACCACCTTGCCATCAACGATGGTCAGCACCGACTCGATGCCCTTGATCGCCTCTTCATCGACACTGAAGAAGTCCAGCGACAATGCT  >  NC_002947/5995293‑5995441

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.