New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5995262 =	45 (1.600)	4 (0.150)	4/238	NT	8.6%	coding (1826/1983 nt)	PP_5252	hypothetical protein
	?	NC_002947	5995293 =	41 (1.500)					coding (1795/1983 nt)	PP_5252	hypothetical protein

CGAAGCACGAACAGCCCAGCGCACCCCAGAAGCCCTGGAAGTCATTTACCGGCACGCTCGAATGCCGCGCCTTTTCGTGGCTGTGCGCATGCACACCACAAGGCCCGCTGCACTGGTGCACCGCGGCTGCCAACGATGGCGTACCGACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTCGAACTCGCCAGCACCGTACACCACCTTGCCATCAACGATGGTCAGCACCGACTCGATGCCCTTGATCGCCTC  >  NC_002947/5995113‑5995407                                                                                                                                                      |                                                                                                                                                   agcattgtcgctggacttcttcagtgtcgatgaagaggcgatcaagggcatcgagtcggtgctgaccatcgttgatggcaaggtggtgtacggtgctggcgagttcgacaagtttggcccaccgcaggtgccggtgctgccggagtggtc                                                                                                                                                    <  1:250118‑M1/1‑1 (MQ=255)  gAAGCACGAACAGCCCAGCGCACCCCAGAAGCCCTGGAAGTCATTTACCGGCACGCTCGAATGCCGCGCCTTTTCGTGGCTGTGCGCATGCACACCACAAGGCCCGCTGCACTGGTGCACCGCGGCTGCCAACGATGGCGTACCGACACg                                                                                                                                                   >  2:323494/1‑150 (MQ=255)     gCACGAACAGCCCAGCGCACCCCAGAAGCCCTGGAAGTCATTTACCGGCACGCTCGAATGCCGCGCCTTTTCGTGGCTGTGCGCATGCACACCACAAGGCCCGCTGCACTGGTGCACCGCGGCTGCCAACGATGGCGTACCGACACGCCa                                                                                                                                                >  2:261807/1‑150 (MQ=255)        cGAACAGCCCAGCGCACCCCAGAAGCCCTGGAAGTCATTTACCGGCACGCTCGAATGCCGCGCCTTTTCGTGGCTGTGCGCATGCACACCACAAGGCCCGCTGCACTGGTGCACCGCGGCTGCCAACGATGGCGTACCGACACGCCAGTg                                                                                                                                             <  2:627603/150‑1 (MQ=255)            cAGCCCAGCGCACCCCAGAAGCCCTGGAAGTCATTTACCGGCACGCTCGAATGCCGCGCCTTTTCGTGGCTGTGCGCATGCACACCACAAGGCCCGCTGCACCGGTGCACCGCGGCTGCCAACGATGGCGTACCGACACGCCAGTGCCCa                                                                                                                                         <  2:643812/150‑1 (MQ=255)              gCCCAGCGCACCCCAGAAGCCCTGGAAGTCATTTACCGGCACGCTCGAATGCCGCGCCTTTTCGTGGCTGTGCGCATGCACACCACAAGGCCCGCTGCACTGGTGCACCGCGGCTGCCAACGATGGCGTACCGACACGCCAGTGCCCA‑gg                                                                                                                                      <  1:607932/150‑1 (MQ=255)               cccAGCGCACCCCAGAAGCCCTGGAAGTCATTTACCGGCACGCTCGAATGCCGCGCCTTTTCGTGGCTGTGCGCATGCACACCACAAGGCCCGCTGCATTGGTGCACCGCGGCTGCCAACGATGGCGTACCGACACGCCAGTGCCCA‑GGc                                                                                                                                     >  1:421448/1‑150 (MQ=255)                 cAGCGCACCCCAGAAGCCCTGGAAGTCATTTACCGGCACGCTCGAATGCCGCGCCTTTTCGTGGCTGTGCGCATGCACACCACAAGGCCCGCTGCACTGGTGCACCGCGGCTGCCAACGATGGCGTACCGACACGCCAGTGCCCA‑GGCAc                                                                                                                                   >  1:241510/1‑150 (MQ=255)                    cgcACCCCACCAGCCCTGGAAGTCATTTACCGGCACGCTCGAATGCCGCGCCTTTTCGTGGCTGTGCGCATGCACACCACAAGGCCCGCTGCACTGGTGCACCGCGGCTGCCAACGATGGCGTACCGACACGCCAGTGCCCA‑GGCACCtt                                                                                                                                <  2:362600/150‑1 (MQ=255)                     gcACCCCAGAAGCCCTGGAAGTCATTTACCGGCACGCTCGAATGCCGCGCCTTTTCGTGGCTGTGCGCATGCACACCACAAGGCCCGCTGCACTGGTGCACCGCGGCTGCCAACGATGGCGTACCGACACGCCAGTGCCCA‑GGCACCTTg                                                                                                                               <  2:105450/150‑1 (MQ=255)                       aCCCCAGAAGCCCTGGAAGTCATTTACCGGCACGCTCGAATGCCGCGCCTTTTCGTGGCTGTGCGCATGCACACCACAAGGCCCGCTGCACTGGTGCACCGCGGCTGCCAACGATGGCGTACCGACACGCCAGTGCCCA‑GGCACCTTGGt                                                                                                                             <  2:3894/150‑1 (MQ=255)                         cccAGAAGCCCTGGAAGTCATTTACCGGCACGCTCGAATGCCGCGCCTTTTCGTGGCTGTGCGCATGCACACCACAAGGCCCGCTGCACTGGTGCACCGCGGCTGCCAACGATGGCGTACCGACACGCCAGTGCCCA‑GGCACCTTGGTCa                                                                                                                           >  2:9540/1‑150 (MQ=255)                         cccAGAAGCCCTGGAAGTCATTTACCGGCACGCTCGAATGCCGCGCCTTTTCGTGGCTGTGCGCATGCACACCACAAGGCCCGCTGCACTGGTGCACCGCGGCTGCCAACGAGGGCGTACCGACACGCCAGTGCCCA‑GGCACCTTGGTCa                                                                                                                           >  1:414987/1‑150 (MQ=255)                             gatgaagaggcgatcaagggcatcgagtcggtgctgaccatcgttgatggcaaggtggtgtacggtgctggcgagttcgacaagtttggcccaccgcaggtgccggtgctgccggagtggtc                                                                                                                                                    <  2:549336‑M1/1‑1 (MQ=255)                             gatgaagaggcgatcaagggcatcgagtcggtgctgaccatcgttgatggcaaggtggtgtacggtgctggcgagttcgacaagtttggcccaccgcaggtgccggtgctgccggagtggtc                                                                                                                                                    >  1:549336‑M1/122‑122 (MQ=255)                                gCCCTGGAAGTCATTTACCGGCACGTTCGAATGCCGCGCCTTTTCGTGGCTGTGCGCATGCACACCACAAGGCCCGCTGCACTGGTGCACCGCGGCTGCCAACGATGGCGTACCGACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGa                                                                                                                    <  2:295932/150‑1 (MQ=255)                                   gaggcgatcaagggcatcgagtcggtgctgaccatcgttgatggcaaggtggtgtacggtgctggcgagttcgacaagtttggcccaccgcaggtgccggtgctgccggagtggtCGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCa                                                                                                                 <  2:260680‑M1/35‑1 (MQ=255)                                    aggcgatcaagggcatcgagtcggtgctgaccatcgttgatggcaaggtggtgtacggtgctggcgagttcgacaagtttggcccaccgcaggtgccggtgctgccggagtggtCGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCAc                                                                                                                >  1:260680‑M1/115‑150 (MQ=255)                                      gAAGTCATTTACCGGCACGCTCGAATGCCGCGCCTTTTCGTGGCTGTGCGCATGCACACCACAAGGCCCGCTGCACTGGTGCACCGCGGCTGCCAACGATGGCGTACCGACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCACTc                                                                                                              >  1:207906/1‑150 (MQ=255)                                         gTCATTTACCGGCACGCTCGAATGCCGCGCCTTTTCGTGGCTGTGCGCATGCACACCACAAGGCCCGCTGCACTGGTGCACCGCGGCTGCCAACGATGGCGTACCGACACGCCAGTGCCCA‑gg                                                                                                                                      <  1:281968/123‑1 (MQ=255)                                         gTCATTTACCGGCACGCTCGAATGCCGCGCCTTTTCGTGGCTGTGCGCATGCACACCACAAGGCCCGCTGCACTGGTGCACCGCGGCTGCCAACGATGGCGTACCGACACGCCAGTGCCCA‑gg                                                                                                                                      >  2:281968/1‑123 (MQ=255)                                          tCATTTACCGGCACGCTCGAATGCCGCGCCTTTTCGTGGCTGTGCGCATGCACACCACAAGGCCCGCTGCACTGGTGCACCGCGGCTGCCAACGATGGCGGACCGACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCACTCCGgc                                                                                                          <  1:136682/150‑1 (MQ=255)                                                             aaTGCCGCGCGTTTTCGTGGCTGTGCGCATGCACACCACAAGGCCCGCTGCACTGGTGCACCGCGGCTGCCAACGATGGCGTACCGACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTg                                                                                       <  2:537018/150‑1 (MQ=255)                                                                   gcgcCTTTTCGTGGCTGTGCGCATGCACACCACAAGGCCCGCTGCACTGGTGCACCGCGGCTGCCAACGATGGCGTACCGACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCaa                                                                                 >  2:176199/1‑150 (MQ=255)                                                                      ccTTTTCGTGGCTGTGCGCATGCACACCACAAGGCCCGCTGCACTGGTGCACCGCGGCTGCCAACGATGGCGTACCGACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACt                                                                              >  2:420168/1‑150 (MQ=255)                                                                       cTTTTCGTGGCTGTGCGCATGCACACCACAAGGCCCGCTGCACTGGTGCACCGCGGCTGCCAACGATGGCGTACCGACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACtt                                                                             >  2:253139/1‑150 (MQ=255)                                                                        ttttCGTGGCTGTGCGCATGCACACCACAAGGCCCGCTGCACTGGTGCACCGCGGCTGCCAACGATGGCGTACCGACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTg                                                                            >  1:177857/1‑150 (MQ=255)                                                                        ttttCGTGGCTGTGCGCATGCACACCACAAGGCCCGCTGCACTGGTGCACCGCGGCTGCCAACGATGGCGTACCGACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTg                                                                            >  2:328003/1‑150 (MQ=255)                                                                          ttCGTGGCTGTGCGCATGCACACCACAAGGCCCGCTGCACTGGTGCACCGCGGCTGCCAACGATGGCGTACCGACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTc                                                                          <  2:241510/150‑1 (MQ=255)                                                                          ttCGTGGCTGTGCGCATGCACACCACAAGGCCCGCTGCACTGGTGCACCGCGGCTGCCAACGATGGCGTACCGACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTc                                                                          <  2:195654/150‑1 (MQ=255)                                                                          ttCGTGGCTGTGCGCATGCACACCACAAGGCCCGCTGAACTGGTGCACCGCGGCTGCCAACGATGGCGTACCGACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTc                                                                          <  1:196359/150‑1 (MQ=255)                                                                              tGGCTGTGCGCATGCACACCACAAGGCCCGCTGCACTGGTGCACCGCGGCTGCCAACGATGGCGTACCGACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTCGAAc                                                                      >  2:255230/1‑150 (MQ=255)                                                                                       gcATGCACACCACAAGGCCCGCTGCACTGGTGCACCGCGGCTGCCAACGATGGCGTACCGACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTCGAACTCGCCAGCa                                                             >  2:250118/1‑150 (MQ=255)                                                                                         aTGCACACCACAAGGCCCGCTGCACTGGTGCACCGCGGCTGCCAACGATGGCGTACCGACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTCGAACTCGCCAGCAcc                                                           >  2:102992/1‑150 (MQ=255)                                                                                           gCACACCACAAGGCCCGCTGCACTGGTGCACCGCGGCTGCCAACGATGGCGTACCGACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTCGAACTCGCCAGCACCGt                                                         >  1:490630/1‑150 (MQ=255)                                                                                            cacaCCACAAGGCCCGCTGCACTGGTGCACCGCGGCTGCCAACGATGGCGTACCGACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTCGAACTCGCCAGCACCGTa                                                        <  1:331396/150‑1 (MQ=255)                                                                                             acacCACAAGGCCCGCTGCACTGGTGCACCGCGGCTGCCAACGATGGCGTACCGACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTCGAACTCGCCAGCACCGTac                                                       >  1:450447/1‑150 (MQ=255)                                                                                             acacCACAAGGCCCGCTGCACTGGTGCACCGCGGCTGCCAACGATGGCGTACCGACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTCGAACTCGCCAGCACCGTac                                                       >  2:718722/1‑150 (MQ=255)                                                                                               accacAAGGCCCGCTGCACTGGTGCACCGCGGCTGCCAACGATGGCGTACCGACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTCGAACTCGCCAGCACCGTacac                                                     >  2:635708/1‑150 (MQ=255)                                                                                                        cccGCTGCACTGGTGCACCGCGGCTGCCAACGATGGCGTACCGACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTgg                                                                                      >  1:116317/1‑108 (MQ=255)                                                                                                        cccGCTGCACTGGTGCACCGCGGCTGCCAACGATGGCGTACCGACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTgg                                                                                      <  2:116317/108‑1 (MQ=255)                                                                                                                aCTGGTGCACCGCGGCTGCCAACGATGGCGTACCGACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTCGAACTCGCCAGCACCGTACACCACCTTGCCATCAACGa                                    >  2:330811/1‑150 (MQ=255)                                                                                                                 cTGGTGCACCGCGGCTGCCAACGATGGCATAGCTACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCACTCCGGCAGCACCGGCAGCTGCGGTGGGCCAAACTTGTCGAACTCGCCAGCACCGTACACCACCTTGCCATCAACGAt                                   <  2:49751/150‑1 (MQ=255)                                                                                                                     tGCACCGCGGCTGCCAACGATGGCGTACCGACACGCCAGTGCCCA‑gg                                                                                                                                      <  1:630823/47‑1 (MQ=255)                                                                                                                     tGCACCGCGGCTGCCAACGATGGCGTACCGACACGCCAGTGCCCA‑gg                                                                                                                                      >  2:630823/1‑47 (MQ=255)                                                                                                                     tGCACCGCGGCTGCCAACGATGGCGTACCGACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTCGAACTCGCCAGCACCGTACACCACCTTGCCATCAACGATGGTc                               <  2:490630/150‑1 (MQ=255)                                                                                                                     tGCACCGCGGCTGCCAACGATGGCGTACCGACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTCGAACTCGCCAGCACCGTACACCACCTTGCCATCAACGATGGTc                               <  2:2615/150‑1 (MQ=255)                                                                                                                              gCTGCCAACGATGGCGTACCGACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTCGAACTCGCCAGCACCGTACACCACCTTGCCATCAACGATGGTCAGCACCGAc                      <  1:330811/150‑1 (MQ=255)                                                                                                                               cTGCCAACGATGGCGTACCGACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTCGAACTCGCCAGCACCGTACACCACCTTGCCATCAACGATGGTCAGCACCGACt                     <  1:9540/150‑1 (MQ=255)                                                                                                                                     aCGATGGCGTACCGACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTCGAACTCGCCAGCACCGTAGACCACCTTGCCATCAACGATGGTCAGCACCGACTCGATGc               <  1:718722/150‑1 (MQ=255)                                                                                                                                     aCGATGGCGTACCGACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTCGAACTCGCCAGCACCGTACACCACCTTGCCATCAACGATGGTCAGCACCGACTCGATGc               <  2:421448/150‑1 (MQ=255)                                                                                                                                           gccggagtggtCGCCGGTGACCAAGGTGCCTGGG‑CACTGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTCGAACTCGCCAGCACCGTACACCACCTTGCCATCAACGa                                    >  2:278698‑M1/12‑123 (MQ=255)                                                                                                                                           gccggagtggtCGCCGGTGACCAAGGTGCCT‑GGGCACTGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTCGAACTCGCCAGCACCGTACACCACCTTGCCATCAACGa                                    <  1:278698‑M1/112‑1 (MQ=255)                                                                                                                                             gTACCGACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTCGAACTCGCCAGCACCGTACACCACCTTGCCATCAACGATGGTCAGCACCGACTCGATGCCCTTGATc       <  1:261807/150‑1 (MQ=255)                                                                                                                                                  gACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGAGCCCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTCGAACTCGCCAGCACCGTACACCACCTTGCCATCAACGATGGTCAGCACCGACTCGATGCCCTTGATCGCctc  <  2:414987/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                   CGAAGCACGAACAGCCCAGCGCACCCCAGAAGCCCTGGAAGTCATTTACCGGCACGCTCGAATGCCGCGCCTTTTCGTGGCTGTGCGCATGCACACCACAAGGCCCGCTGCACTGGTGCACCGCGGCTGCCAACGATGGCGTACCGACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTCGAACTCGCCAGCACCGTACACCACCTTGCCATCAACGATGGTCAGCACCGACTCGATGCCCTTGATCGCCTC  >  NC_002947/5995113‑5995407

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.