New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5995262 =	45 (1.600)	4 (0.150)	4/238	NT	8.6%	coding (1826/1983 nt)	PP_5252	hypothetical protein
	?	NC_002947	5995293 =	41 (1.500)					coding (1795/1983 nt)	PP_5252	hypothetical protein

GCCCTGGAAGTCATTTACCGGCACGCTCGAATGCCGCGCCTTTTCGTGGCTGTGCGCATGCACACCACAAGGCCCGCTGCACTGGTGCACCGCGGCTGCCAACGATGGCGTACCGACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTCGAACTCGCCAGCACCGTACACCACCTTGCCATCAACGATGGTCAGCACCGACTCGATGCCCTTGATCGCCTCTTCATCGACACTGAAGAAGTCCAGCGACAATGCT  >  NC_002947/5995144‑5995441                                                                                                                                                       |                                                                                                                                                     gCCCTGGAAGTCATTTACCGGCACGTTCGAATGCCGCGCCTTTTCGTGGCTGTGCGCATGCACACCACAAGGCCCGCTGCACTGGTGCACCGCGGCTGCCAACGATGGCGTACCGACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGa                                                                                                                                                      <  2:295932/150‑1 (MQ=255)    gaggcgatcaagggcatcgagtcggtgctgaccatcgttgatggcaaggtggtgtacggtgctggcgagttcgacaagtttggcccaccgcaggtgccggtgctgccggagtggtCGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCa                                                                                                                                                   <  2:260680‑M1/35‑1 (MQ=255)     aggcgatcaagggcatcgagtcggtgctgaccatcgttgatggcaaggtggtgtacggtgctggcgagttcgacaagtttggcccaccgcaggtgccggtgctgccggagtggtCGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCAc                                                                                                                                                  >  1:260680‑M1/115‑150 (MQ=255)       gAAGTCATTTACCGGCACGCTCGAATGCCGCGCCTTTTCGTGGCTGTGCGCATGCACACCACAAGGCCCGCTGCACTGGTGCACCGCGGCTGCCAACGATGGCGTACCGACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCACTc                                                                                                                                                >  1:207906/1‑150 (MQ=255)           tCATTTACCGGCACGCTCGAATGCCGCGCCTTTTCGTGGCTGTGCGCATGCACACCACAAGGCCCGCTGCACTGGTGCACCGCGGCTGCCAACGATGGCGGACCGACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCACTCCGgc                                                                                                                                            <  1:136682/150‑1 (MQ=255)                              aaTGCCGCGCGTTTTCGTGGCTGTGCGCATGCACACCACAAGGCCCGCTGCACTGGTGCACCGCGGCTGCCAACGATGGCGTACCGACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTg                                                                                                                         <  2:537018/150‑1 (MQ=255)                                    gcgcCTTTTCGTGGCTGTGCGCATGCACACCACAAGGCCCGCTGCACTGGTGCACCGCGGCTGCCAACGATGGCGTACCGACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCaa                                                                                                                   >  2:176199/1‑150 (MQ=255)                                       tcgttgatggcaaggtggtgtacggtgctggcgagttcgacaagtttggcccaccgcaggtgccggtgctgccggagtggtcgccagtgcccaggcaccttggtcaccggcgACCACTCCGgc                                                                                                                                            >  2:278698‑M2/113‑123 (MQ=255)                                       tcgttgatggcaaggtggtgtacggtgctggcgagttcgacaagtttggcccaccgcaggtgccggtgctgccggagtggtcgccagtgcccaggcaccttggtcaccggcgACCACTCCGgc                                                                                                                                            <  1:278698‑M2/11‑1 (MQ=255)                                       ccTTTTCGTGGCTGTGCGCATGCACACCACAAGGCCCGCTGCACTGGTGCACCGCGGCTGCCAACGATGGCGTACCGACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACt                                                                                                                >  2:420168/1‑150 (MQ=255)                                        cTTTTCGTGGCTGTGCGCATGCACACCACAAGGCCCGCTGCACTGGTGCACCGCGGCTGCCAACGATGGCGTACCGACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACtt                                                                                                               >  2:253139/1‑150 (MQ=255)                                         ttttCGTGGCTGTGCGCATGCACACCACAAGGCCCGCTGCACTGGTGCACCGCGGCTGCCAACGATGGCGTACCGACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTg                                                                                                              >  2:328003/1‑150 (MQ=255)                                         ttttCGTGGCTGTGCGCATGCACACCACAAGGCCCGCTGCACTGGTGCACCGCGGCTGCCAACGATGGCGTACCGACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTg                                                                                                              >  1:177857/1‑150 (MQ=255)                                           ttCGTGGCTGTGCGCATGCACACCACAAGGCCCGCTGCACTGGTGCACCGCGGCTGCCAACGATGGCGTACCGACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTc                                                                                                            <  2:241510/150‑1 (MQ=255)                                           ttCGTGGCTGTGCGCATGCACACCACAAGGCCCGCTGCACTGGTGCACCGCGGCTGCCAACGATGGCGTACCGACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTc                                                                                                            <  2:195654/150‑1 (MQ=255)                                           ttCGTGGCTGTGCGCATGCACACCACAAGGCCCGCTGAACTGGTGCACCGCGGCTGCCAACGATGGCGTACCGACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTc                                                                                                            <  1:196359/150‑1 (MQ=255)                                               tGGCTGTGCGCATGCACACCACAAGGCCCGCTGCACTGGTGCACCGCGGCTGCCAACGATGGCGTACCGACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTCGAAc                                                                                                        >  2:255230/1‑150 (MQ=255)                                                        gcATGCACACCACAAGGCCCGCTGCACTGGTGCACCGCGGCTGCCAACGATGGCGTACCGACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTCGAACTCGCCAGCa                                                                                               >  2:250118/1‑150 (MQ=255)                                                          aTGCACACCACAAGGCCCGCTGCACTGGTGCACCGCGGCTGCCAACGATGGCGTACCGACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTCGAACTCGCCAGCAcc                                                                                             >  2:102992/1‑150 (MQ=255)                                                            gCACACCACAAGGCCCGCTGCACTGGTGCACCGCGGCTGCCAACGATGGCGTACCGACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTCGAACTCGCCAGCACCGt                                                                                           >  1:490630/1‑150 (MQ=255)                                                             cacaCCACAAGGCCCGCTGCACTGGTGCACCGCGGCTGCCAACGATGGCGTACCGACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTCGAACTCGCCAGCACCGTa                                                                                          <  1:331396/150‑1 (MQ=255)                                                              acacCACAAGGCCCGCTGCACTGGTGCACCGCGGCTGCCAACGATGGCGTACCGACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTCGAACTCGCCAGCACCGTac                                                                                         >  2:718722/1‑150 (MQ=255)                                                              acacCACAAGGCCCGCTGCACTGGTGCACCGCGGCTGCCAACGATGGCGTACCGACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTCGAACTCGCCAGCACCGTac                                                                                         >  1:450447/1‑150 (MQ=255)                                                                accacAAGGCCCGCTGCACTGGTGCACCGCGGCTGCCAACGATGGCGTACCGACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTCGAACTCGCCAGCACCGTacac                                                                                       >  2:635708/1‑150 (MQ=255)                                                                         cccGCTGCACTGGTGCACCGCGGCTGCCAACGATGGCGTACCGACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTgg                                                                                                                        <  2:116317/108‑1 (MQ=255)                                                                         cccGCTGCACTGGTGCACCGCGGCTGCCAACGATGGCGTACCGACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTgg                                                                                                                        >  1:116317/1‑108 (MQ=255)                                                                                 aCTGGTGCACCGCGGCTGCCAACGATGGCGTACCGACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTCGAACTCGCCAGCACCGTACACCACCTTGCCATCAACGa                                                                      >  2:330811/1‑150 (MQ=255)                                                                                  cTGGTGCACCGCGGCTGCCAACGATGGCATAGCTACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCACTCCGGCAGCACCGGCAGCTGCGGTGGGCCAAACTTGTCGAACTCGCCAGCACCGTACACCACCTTGCCATCAACGAt                                                                     <  2:49751/150‑1 (MQ=255)                                                                                      tGCACCGCGGCTGCCAACGATGGCGTACCGACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTCGAACTCGCCAGCACCGTACACCACCTTGCCATCAACGATGGTc                                                                 <  2:490630/150‑1 (MQ=255)                                                                                      tGCACCGCGGCTGCCAACGATGGCGTACCGACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTCGAACTCGCCAGCACCGTACACCACCTTGCCATCAACGATGGTc                                                                 <  2:2615/150‑1 (MQ=255)                                                                                               gCTGCCAACGATGGCGTACCGACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTCGAACTCGCCAGCACCGTACACCACCTTGCCATCAACGATGGTCAGCACCGAc                                                        <  1:330811/150‑1 (MQ=255)                                                                                                cTGCCAACGATGGCGTACCGACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTCGAACTCGCCAGCACCGTACACCACCTTGCCATCAACGATGGTCAGCACCGACt                                                       <  1:9540/150‑1 (MQ=255)                                                                                                      aCGATGGCGTACCGACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTCGAACTCGCCAGCACCGTAGACCACCTTGCCATCAACGATGGTCAGCACCGACTCGATGc                                                 <  1:718722/150‑1 (MQ=255)                                                                                                      aCGATGGCGTACCGACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTCGAACTCGCCAGCACCGTACACCACCTTGCCATCAACGATGGTCAGCACCGACTCGATGc                                                 <  2:421448/150‑1 (MQ=255)                                                                                                            gccggagtggtCGCCGGTGACCAAGGTGCCTGGG‑CACTGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTCGAACTCGCCAGCACCGTACACCACCTTGCCATCAACGa                                                                      >  2:278698‑M1/12‑123 (MQ=255)                                                                                                            gccggagtggtCGCCGGTGACCAAGGTGCCT‑GGGCACTGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTCGAACTCGCCAGCACCGTACACCACCTTGCCATCAACGa                                                                      <  1:278698‑M1/112‑1 (MQ=255)                                                                                                              gTACCGACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTCGAACTCGCCAGCACCGTACACCACCTTGCCATCAACGATGGTCAGCACCGACTCGATGCCCTTGATc                                         <  1:261807/150‑1 (MQ=255)                                                                                                                   gtggtcgccggtgaccaaggtgcctgggcactggcgACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTCGAACTCGCCAGCACCGTACACCACCTTGCCATCAACGATGGTCAGCACCGACTCGATGCCCTTGATCGCct                                     >  1:260680‑M2/37‑150 (MQ=255)                                                                                                                   gACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGAGCCCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTCGAACTCGCCAGCACCGTACACCACCTTGCCATCAACGATGGTCAGCACCGACTCGATGCCCTTGATCGCctc                                    <  2:414987/150‑1 (MQ=255)                                                                                                                    tggtcgccggtgaccaaggtgcctgggcactggcgACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTCGAACTCGCCAGCACCGTACACCACCTTGCCATCAACGATGGTCAGCACCGACTCGATGCCCTTGATCGCctc                                    <  2:260680‑M2/115‑1 (MQ=255)                                                                                                                        GCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTCGAACTCGCCAGCACCGTACACCACCTTGCCATCAACGATGGTCGGCACCGACTCGATGCCCTTGATCGCCTCTTcac                               <  2:195029‑M1/150‑2 (MQ=255)                                                                                                                             tGCCCA‑GGCACCTTGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTCGAACTCGCCAGCACCGTACACCACCTTGCCATCAACGATGGTCAGCACCGACTCGATGCCCTTGATCGCCTCTTCATCGaca                          <  1:635708/150‑1 (MQ=255)                                                                                                                               cccA‑GGCACCTTGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTCGAACTCGCCAGCACCGTACACCACCTTGCCATCAACGATGGTCAGCACCGACTCGATGCCCTTGATCGCCTCTTCATCGACACt                        <  2:177857/150‑1 (MQ=255)                                                                                                                                ccA‑GGCACCTTGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTCGAACTCGCCAGCACCGTaca                                                                                        >  1:450159/1‑85 (MQ=255)                                                                                                                                ccA‑GGCACCTTGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTCGAACTCGCCAGCACCGTaca                                                                                        <  2:450159/85‑1 (MQ=255)                                                                                                                                        ccTTGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTCGAACTCGCCAGCACCGTACACCACCTTGCCATCAACGATGGTCAGCACCGACTCGATGCCCTTGATCGCCTCTTCATCGACACTGAAGAAGt                >  1:24835/1‑150 (MQ=255)                                                                                                                                         cTTGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTCGAACTCGCCAGCACCGTACACCACCTTGCCATCAACGATGGTCAGCACCGACTCGATGCCCTTGATCGCCTCTTCATCGACACTGAAGAAGTc               >  2:732074/1‑150 (MQ=255)                                                                                                                                         cTTGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTACGGTGGGCCAAACTTGTCGAACTCGCCAGCACCGTACACCACCTTGCCATCAACGATGGTCAGCACCGACTCGATGCCCTTGATCGCCTCTTCATGGACACTGAAGAAGTc               >  1:747839/1‑150 (MQ=255)                                                                                                                                          ttGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTCGAACTCGCCAGCACCGTACACCACCTTGCCATCAACGATGGTCAGCACCGACTCGATGCCCTTGATCGCCTCTTCATCGACACTGAAGAAGTcc              <  2:207906/150‑1 (MQ=255)                                                                                                                                           tGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTCGAACTCGCCAGCACCGTACACCACCTTGCCATCAACGATGGTCAGCACCGACTCGATGCCCTTGATCGCCTCTTCATCGACACTGAAGAAGTCCa             <  1:420168/150‑1 (MQ=255)                                                                                                                                             gTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTCGAACTCGCCAGCACCGTACACCACCTTGCCATCAACGATGGTCAGCACCGACTCGATGCCCTTGATCGCCTCTTCATCGACACTGAAGAAGTCCAGc           <  1:328003/150‑1 (MQ=255)                                                                                                                                              tCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTCGAACTCGCCAGCACCGTACACCACCTTGCCATCAACGATGGTCAGCACCGACTCGATGCCCTTGATCGCCTCTTCATCGACACTGAAGAAGTCCAGCg          >  1:215022/1‑150 (MQ=255)                                                                                                                                               cACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTCGAACTCGCCAGCACCGTACACCACCTTGCCATCAACGATGGTAAGCACCGACTCGATGCCCTTGATCGCCTCTTCATCGACACTGAAGAAGTCCAGCGa         >  2:351024/1‑150 (MQ=255)                                                                                                                                                      gACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTCGAACTCGCCAGCACCGTACACCACCTTGCCATCAACGATGGTCAGCACCGACTCGATGCCCTTGATCGCCTCTTCATc                              >  1:549336‑M2/2‑122 (MQ=255)                                                                                                                                                      gACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTCGAACTCGCCAGCACCGTACACCACCTTGCCATCAACGATGGTCAGCACCGACTCGATGCCCTTGATCGCCTCTTCATc                              <  2:549336‑M2/121‑1 (MQ=255)                                                                                                                                                      gACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTCGAACTCGCCAGCACCGTACACCACCTTGCCATCAACGATGGTCAGCACCGACTCGATGCCCTTGATCGCCTCTTCATCGACACTGAAGAAGTCCAGCGACAATGCt  <  1:250118‑M2/149‑1 (MQ=255)                                                                                                                                                       |                                                                                                                                                     GCCCTGGAAGTCATTTACCGGCACGCTCGAATGCCGCGCCTTTTCGTGGCTGTGCGCATGCACACCACAAGGCCCGCTGCACTGGTGCACCGCGGCTGCCAACGATGGCGTACCGACACGCCAGTGCCCA‑GGCACCTTGGTCACCGGCGACCACTCCGGCAGCACCGGCACCTGCGGTGGGCCAAACTTGTCGAACTCGCCAGCACCGTACACCACCTTGCCATCAACGATGGTCAGCACCGACTCGATGCCCTTGATCGCCTCTTCATCGACACTGAAGAAGTCCAGCGACAATGCT  >  NC_002947/5995144‑5995441

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.