New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	590696 =	38 (1.350)	3 (0.110)	3/240	NT	7.9%	coding (817/885 nt)	PP_0500	dTDP‑4‑rhamnose reductase‑like protein
	?	NC_002947	590734 =	33 (1.200)					coding (855/885 nt)	PP_0500	dTDP‑4‑rhamnose reductase‑like protein

CGCTGGGCCAGGCGATCCTCGCCGAGGCCGGCCAATACCGCCAGCTGGCCGTTCAGGCCCCCACGCCGCAGGCCCATGCCGCGCGCCCGGATGCCAGCGAAGAGCCACAGCACGCGGTACTGGCCTGCAAGAAAATCCTTCATACCTTCGGTATCAAGCCGCGTGCCTGGCGCGCTGGCTTGCCACCTCTACTGGACCGGTTCTACCGCCATGGCTGACGCCCCCATCCTGATCACCGGCGGTGCCGGCTTCATTGGCTCCCACCTGTGCGATGCGTTGTTGGACAAAGGCTACGCCGT  >  NC_002947/590547‑590845                                                                                                                                                      |                                                                                                                                                      cgctggGCCAGGCGATCCTCGCCGAGGCCGGCCAATACCGCCAGCTGGCCGTTCAGGCCCCCACGCCGCAGGCCCATGCCGCGCGCCCGGATGCCAGCGAAGAGCCACAGCACGCGGTACTGGCCTGCAAGAAAATCCTTCATACCTTCg                                                                                                                                                       <  2:79503/150‑1 (MQ=255)      ggCCAGGCGATCCTCGCCGAGGCCGGCCAATACCGCCAGCTGGCCGTTCAGGCCCCCACGCCGCAGGCCCATGCCGCGCGCCCGGATGCCAGCGAAGAGCCACAGCACGCGGTACTGGCCTGCAAGAAAATCCTTCATACCTTCGGTATc                                                                                                                                                  >  2:582072/1‑150 (MQ=255)         cAGGCGATCCTCGCCGAGGCCGGCCAATACCGCCAGCTGGCCGTTCAGGCCCCCACGCCGCAGGCCCATGCCGCCCGCCCGGGGGCCAGCGAAGAGCCACAGCACACGAAACAGGCCTGCAAGAAAATCCTTCATACCTTCGGTATCAAg                                                                                                                                               >  2:532864/1‑150 (MQ=255)             caaTCCTCGCCGAGGCCGGCCAATACCGCCAGCTGGCCGTTCAGGCCCCCACGCCGCAGGCCCATGCCGCGCGCCCGGATGCCAGCGAAGAGCCACAGCACGCGGTACTGGCCTGCAAGAAAATCCTTCATACCTTCGGTATCAAGCcgc                                                                                                                                           <  1:446793/148‑1 (MQ=255)                ggatCGCCGAGGCCGGCCAATACCGCCAGCTGGCCGTTCAGGCCCCCACGCCGCAGGCCCATGCCGCGCGCCCGGATGCCAGCGAAGAGCCACAGCACGCGGTACTGGCCTGCAAGAAAATCCTTCATACCTTCGGTATCAAGCCGCGTg                                                                                                                                        >  1:283759/4‑150 (MQ=255)                 ccTCGCCGAGGCCGGCCAATACCGCCAGCTGGCCGTCGCTCCCCCCACGCCGCAGGCCCATGCCGCGCGCCCGGATGCCAGCGAAGAGCCACAGCACGCGGTACTGGCCTGCAAGAAAATCCTTCATACCTTCGGTATCAAGCCGCGTGc                                                                                                                                       <  1:39308/150‑1 (MQ=255)                   tCGCCGAGGCCGGCCAATACCGCCAGCTGGCCGTTCAGGCCCCCACGCCGCAGGCCCATGCCGCGCGCCCGGATGCCAGCGAAGAGCCACAGCACGCGGTACTGGCCTGCAAGAAAATCCTTCATACCTTCGGTATCAAGCCGCGTGCCt                                                                                                                                     >  2:48035/1‑150 (MQ=255)                           gccggccAATACCGCCAGCTGGCCGTTCAGGCCCCCACGCCGCAGGCCCATGCCGCGCGCCCGGATGCCAGCGAAGAGCCACAGCACGCGGTACTGGCCTGCAAGAAAATCCTTCATACCTTCGGTATCAAGCCGCGTGCCTGGCGCGCt                                                                                                                             <  2:224388/150‑1 (MQ=255)                             cggccAATACCGCCAGCTGGCCGTTCAGGCCCCCACGCCGCAGGCCCATGCCGCGCGCCCGGATGCCAGCGAAGAGCCACAGCACGCGGTACTGGCCTGCAAGAAAATCCTTCATACCTTCGGt                                                                                                                                                     <  2:575510/124‑1 (MQ=255)                             cggccAATACCGCCAGCTGGCCGTTCAGGCCCCCACGCCGCAGGCCCATGCCGCGCGCCCGGATGCCAGCGAAGAGCCACAGCACGCGGTACTGGCCTGCAAGAAAATCCTTCATACCTTCGGt                                                                                                                                                     >  1:575510/1‑124 (MQ=255)                               gccAATACCGCCAGCTGGCCGTTCAGGCCCCCACGCCGCAGGCCCATGCCGCGCGCCCGGATGCCAGCGAAGAGCCACAGCACGCGGTACTGGCCTGCAAGAAAATCCTTCATACCTTCGGTATCAAGCCGCGTGCCTGGCGCGCTGGCt                                                                                                                         <  2:283759/150‑1 (MQ=255)                                  aaTACCGCCAGCTGGCCGTTCAGGCCCCCACGCCGCAGGCCCATGCCGCGCGCCCGGATGCCAGCGAAGAGCCACAGCACGCGGTACTGGCCTGCAAGAAAATCCTTCATACCTTCGGTATCAAGCCGCGTGCCTGGCGCGCTGGCTTGc                                                                                                                      >  2:42314/1‑150 (MQ=255)                                   aTACCGCCAGCTGGCCGTTCAGGCCCCCACGCCGCAGGCCCATGCCGCGCGCCCGGATGCCAGCGAAGAGCCACAGCACGCGGTACTGGCCTGCAAGAAAATCCTTCATACCTTCGGTATCAAGCCGCGTGCCTGGCGCGCTGGCtt                                                                                                                        <  1:693946/147‑1 (MQ=255)                                   aTACCGCCAGCTGGCCGTTCAGGCCCCCACGCCGCAGGCCCATGCCGCGCGCCCGGATGCCAGCGAAGAGCCACAGCACGCGGTACTGGCCTGCAAGAAAATCCTTCATACCTTCGGTATCAAGCCGCGTGCCTGGCGCGCTGGCtt                                                                                                                        >  2:693946/1‑147 (MQ=255)                                   aTACCGCCAGCTGGCCGTTCAGGCCCCCACGCCGCAGGCCCATGCCGCGCGCCCGGATGCCAGCGAAGAGCCACAGCACGCGGTACTGGACTGCAAGAAAATCCTTCATACCTTCGGTATCAAGCCGCGTGCCTGGCGCGCTGGCTTGcc                                                                                                                     >  1:741822/1‑150 (MQ=255)                                    gtacggcgtagcctttgtccaacaacgcatcgcacaggtgggagccaatgaagccggcaccgccggtgatcaggatgggggcatcagccatggcggtagaaccggtccagtagaGGTATCAAGCCGCGTGCCTGGCGCGCTGGCTTGCCa                                                                                                                    <  2:96653‑M1/36‑1 (MQ=255)                                     tacggcgtagcctttgtccaacaacgcatcgcacaggtgggagccaatgaagccggcaccgccggtgatcaggatgggggcatcagccatggcggtagaaccggtccagtagaGGTATCAAGCCGCGTGCCTGGCGCGCTGGCTTGCCAc                                                                                                                   >  1:96653‑M1/114‑150 (MQ=255)                                      acggcgtagcctttgtccaacaacgcatcgcacaggtgggagccaatgaagccggcaccgccggtgatcaggatgggggcgtcagccatggcggtagaaccggtccagtagaGGTATCAAGCCGCGTGCCTGGCGCGCTGGCTTGCCAcc                                                                                                                  >  2:433568‑M1/113‑150 (MQ=255)                                            gCTGGCCGTTCAGGCCCCCACGCCGCAGGCCCATGCCGCGCGCCCGGATGCCAGCGAAGAGCCACAGCACGCGGTACTGGCCTGCAAGAAAATCCTTCATACCTTCGGTATCAAGCCGCGTGCCTGGCGCGCTGGCTTGCCACCTCTACt                                                                                                            <  2:446758/150‑1 (MQ=255)                                               ggCCGTTCAGGCCCCCACGCCGCAGGCCCATGCCGCGCGCCCGGATGCCAGCGAAGAGCCACAGCACGCGGTACTGGACTGCAAGAAAATCCTTCATACCTTCGGTATCAAGCCGCGTGCCTGGCGCGCTGGCTTGCCACCTCTACTGGa                                                                                                         <  2:741822/150‑1 (MQ=255)                                                  cGTTCAGGCCCCCACGCCGCAGGCCCATGCCGCGCGCCCGGATGCCAGCGAAGAGCCACAGCACGCGGTACTGGCCTGCAAGAAAATCCTTCATACCTTCGGTATCAAGCCGCGTGCCTGGCGCGCTGGCTTGCCACCTCTACTGGACCg                                                                                                      <  1:582072/150‑1 (MQ=255)                                                  cGTTCAGGCCCCCACGCCGCAGGCCCATGCCGCGCGCCCGGATGCCAGCGAAGAGCCACAGCACGCGGTACTGGCCTGCAAGAAAATCCTTCATACCTTCGGTATCAAGCCGCGTGCCTGGCGCGCTGGCTTGCCACCTCTACTGGACCg                                                                                                      >  1:373518/1‑150 (MQ=255)                                                                 gccgcAGGCCCATGCCGCGCGCCCGGATGCCAGCGAAGAGCCACAGCACGCGGTACTGGCCTGCAAGAAAATCCTTCATACCTTCGGTATCAAGCCGCGTGCCTGGCGCGCTGGCTTGCCACCTCTACTGGACCGGTTCTACCGCCATgg                                                                                       <  1:454870/150‑1 (MQ=255)                                                                          ccATGCCGCGCGCCCGGATGCCAGCGAAGAGCCACAGCACGCGGTACTGGCCTGCAAGAAAATCCTTCATACCTTCGGTATCAAGCCGCGTGCCTGGCGCGCTGGCTTGCCACCTCTACTGGACCGGTTCTACCGCCATGGCTGACGccc                                                                              <  2:23484/150‑1 (MQ=255)                                                                             tGCCGCGCGCCCGGATGCCAGCGAAGAGCCACAGCACGCGGTACTGGCCTGCAAGAAAATCCTTCATACCTTCGGTATCAAGCCGCGTGCCTGGCGCGCTGGCTTGCCACCTCTACTGGACCGGTTCTACCGCCATGGCTGACGCCCCCa                                                                           <  2:436915/150‑1 (MQ=255)                                                                                cgcgcgCCCGGATGCCAGCGAAGAGCCACAGCACGCGGTACTGGCCTGCAAGAAAATCCTTCATACCTTCGGTATCAAGCCGCGTGCCTGGCGCGCTGGCTTGCCACCTCTACTGGACCGGTTCTACCGCCATGGCTGACGCCCCCATcc                                                                        <  1:744908/150‑1 (MQ=255)                                                                                 gcgcgcCCGGATGCCAGCGAAGAGCCACAGCACGCGGTACTGGCCTGCAAGAAAATCCTTCATACCTTCGGTATCAAGCCGCGTGCCTGGCGCGCTGGCTTGCCACCTCTACTGGACCGGTTCTACCGCCATGGCTGACGCCCCCATCCt                                                                       >  2:486376/1‑150 (MQ=255)                                                                                      aagccggcaccgccggtgatcaggatgggggcgtcagccatggcggtagaaccggtccagtagaGGt                                                                                                                                                     >  2:213297‑M1/65‑67 (MQ=255)                                                                                      aagccggcaccgccggtgatcaggatgggggcgtcagccatggcggtagaaccggtccagtagaGGt                                                                                                                                                     <  1:213297‑M1/3‑1 (MQ=255)                                                                                        cGGATGCCAGCGAAGAGCCACAGCACGCGGTACTGGCCTGCAAGAAAATCCTTCATACCTTCGGTATCAAGCCGCGTGCCTGGCGCGCTGGCTTGCCACCTCTACTGGACCGGTTCTACCGCCATGGCTGACGCCCCCATCCTGATCAcc                                                                <  1:214046/150‑1 (MQ=255)                                                                                         ggATGCCAGCGAAGAGCCACAGCACGCGGTACTGGCCTGCAAGAAAATCCTTCATACCTTCGGTATCAAGCCGCGTGCCTGGCGCGCTGGCTTGCCACCTCTACTGGACCGGTTCTACCGCCATGGCTGACGCCCCCATc                                                                         <  2:353033/140‑1 (MQ=255)                                                                                         ggATGCCAGCGAAGAGCCACAGCACGCGGTACTGGCCTGCAAGAAAATCCTTCATACCTTCGGTATCAAGCCGCGTGCCTGGCGCGCTGGCTTGCCACCTCTACTGGACCGGTTCTACCGCCATGGCTGACGCCCCCATc                                                                         >  1:353033/1‑140 (MQ=255)                                                                                                 gCGAAGAGCCACAGCACGCGGTACTGGCCTGCAAGAAAATCCTTCATACCTTCGGTATCAAGCCGCGTGCCTGGCGCGCTGGCTTGCCACCTCTACTGGa                                                                                                         <  2:163673/100‑1 (MQ=255)                                                                                                 gCGAAGAGCCACAGCACGCGGTACTGGCCTGCAAGAAAATCCTTCATACCTTCGGTATCAAGCCGCGTGCCTGGCGCGCTGGCTTGCCACCTCTACTGGa                                                                                                         >  1:163673/1‑100 (MQ=255)                                                                                                        gCCACAGCACGCGGTACTGGCCTGCAAGAAAATCCTTCATACCTTCGGTATCaa                                                                                                                                                >  1:732014/1‑54 (MQ=255)                                                                                                        gCCACAGCACGCGGTACTGGCCTGCAAGAAAATCCTTCATACCTTCGGTATCaa                                                                                                                                                <  2:732014/54‑1 (MQ=255)                                                                                                                            ccTGCAAGAAAATCCTTCATACCTTCGGTATCAAGCCGCGTGCCTGGCGCGCTGGCTTGCCACCTCTACTGGACCGGTTCTACCGCCATGGCTGACGCCCCCATCCTGATCACCGGCGGTGCCGGCTTCATTGGCTCCCACCTGTGCGAt                            <  1:48035/150‑1 (MQ=255)                                                                                                                             cTGCAAGAAAATCCTTCATACCTTCGGTATCAAGCCGCGTGCCTGGCGCGCTGGCTTGCCACCTCTACTGGACCGGTTCTACCGCCATGGCTGACGCCCCCATCCTGATCACCGGCGGTGCCGGCTTCATTGGCTCCCACCTGTGCGATg                           >  1:749663/1‑150 (MQ=255)                                                                                                                                   gAAAATCCTTCATACCTTCGGTATCAAGCCGCGTGCCTGGCGCGCTGGCTTGCCACCTCTACTGGAc                                                                                                        <  2:120119/67‑1 (MQ=255)                                                                                                                                   gAAAATCCTTCATACCTTCGGTATCAAGCCGCGTGCCTGGCGCGCTGGCTTGCCACCTCTACTGGAc                                                                                                        >  1:120119/1‑67 (MQ=255)                                                                                                                                          cTTCATACCTTCGGTATCAAGCCGCGTGCCTGGCGCGCTGGCTTGCCACCTCTACTGGACCGGTTCTACCGCCATGGCTGACGCCCCCATCCTGATCACCGGCGGTGCCGGCTTCATTGGCTCCCACCTGTGCGATGCGTTGTTGGACaa              <  1:118039/150‑1 (MQ=255)                                                                                                                                           ttCATACCTTCGGTATCAAGCCGCGTGCCTGGCGCGCTGGCTTGCCACCTCTACTGGACCGGTTCTACCGCCATGGCTGACGCCCCCATCCTGATCACCGGCGGTGCCGGCTTCATTGGCTCCCACCTGTGCGATGCGTTGTTGGAc                <  2:40202/147‑1 (MQ=255)                                                                                                                                           ttCATACCTTCGGTATCAAGCCGCGTGCCTGGCGCGCTGGCTTGCCACCTCTACTGGACCGGTTCTACCGCCATGGCTGACGCCCCCATCCTGATCACCGGCGGTGCCGGCTTCATTGGCTCCCACCTGTGCGATGCGTTGTTGGAc                >  1:40202/1‑147 (MQ=255)                                                                                                                                           ttCATACCTTCGGTATCAAGCCGCGTGCCTGGCGCGCTGGCTTGCCACCTCTACTGGACCGGTTCTACCGCCATGGCTGACGCCCCCATCCTGATCACCGGCGGTGCCGGCTTCATTGGCTCCCACCTGTGCGATGCGTTGTTGGACaaa             <  1:42314/150‑1 (MQ=255)                                                                                                                                            tCATACCTTCGGTATCAAGCCGCGTGCCTGGCGCGCTGGCTTGCCACCTCTACTGGACCGGTTCTACCGCCATg                                                                                        >  2:220650/1‑74 (MQ=255)                                                                                                                                            tCATACCTTCGGTATCAAGCCGCGTGCCTGGCGCGCTGGCTTGCCACCTCTACTGGACCGGTTCTACCGCCATg                                                                                        <  1:220650/74‑1 (MQ=255)                                                                                                                                                   ttCGGTATCAAGCCGCGTGCCTGGCGCGCTGGCTTGCCACCTCTACTGGACCGGTTCTACCGCCATGGCTGACGCCCCCATCCTGATCACCGGCGGTGCCGGCTTCATTGGCTCCCACCTGTGCGATGCGTTGTTGGACAAAGGCTACGc     >  1:368320/1‑150 (MQ=255)                                                                                                                                                      GGTATCAAGCCGCGTGCCTGGCGCGCTGGCTTGCCACCTCTACTGGACCGGTTCTACCGCCATGGCTGACGCCCCCATCCTGATCACCGGCGGTGCCGGCTTCATTGGCTCCCACCTGTGCGATGCGTTGTTGGACAAAGGCTACGCCGt  >  2:749663‑M1/1‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                                      CGCTGGGCCAGGCGATCCTCGCCGAGGCCGGCCAATACCGCCAGCTGGCCGTTCAGGCCCCCACGCCGCAGGCCCATGCCGCGCGCCCGGATGCCAGCGAAGAGCCACAGCACGCGGTACTGGCCTGCAAGAAAATCCTTCATACCTTCGGTATCAAGCCGCGTGCCTGGCGCGCTGGCTTGCCACCTCTACTGGACCGGTTCTACCGCCATGGCTGACGCCCCCATCCTGATCACCGGCGGTGCCGGCTTCATTGGCTCCCACCTGTGCGATGCGTTGTTGGACAAAGGCTACGCCGT  >  NC_002947/590547‑590845

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.