New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	590696 =	38 (1.350)	3 (0.110)	3/240	NT	7.9%	coding (817/885 nt)	PP_0500	dTDP‑4‑rhamnose reductase‑like protein
	?	NC_002947	590734 =	33 (1.200)					coding (855/885 nt)	PP_0500	dTDP‑4‑rhamnose reductase‑like protein

GCTGGCCGTTCAGGCCCCCACGCCGCAGGCCCATGCCGCGCGCCCGGATGCCAGCGAAGAGCCACAGCACGCGGTACTGGCCTGCAAGAAAATCCTTCATACCTTCGGTATCAAGCCGCGTGCCTGGCGCGCTGGCTTGCCACCTCTACTGGACCGGTTCTACCGCCATGGCTGACGCCCCCATCCTGATCACCGGCGGTGCCGGCTTCATTGGCTCCCACCTGTGCGATGCGTTGTTGGACAAAGGCTACGCCGTACGCATTCTCGACGACTTCTCCACCGGC  >  NC_002947/590590‑590873                                                                                                                                                 |                                                                                                                                            gCTGGCCGTTCAGGCCCCCACGCCGCAGGCCCATGCCGCGCGCCCGGATGCCAGCGAAGAGCCACAGCACGCGGTACTGGCCTGCAAGAAAATCCTTCATACCTTCGGTATCAAGCCGCGTGCCTGGCGCGCTGGCTTGCCACCTCTACt                                                                                                                                        <  2:446758/150‑1 (MQ=255)    ggCCGTTCAGGCCCCCACGCCGCAGGCCCATGCCGCGCGCCCGGATGCCAGCGAAGAGCCACAGCACGCGGTACTGGACTGCAAGAAAATCCTTCATACCTTCGGTATCAAGCCGCGTGCCTGGCGCGCTGGCTTGCCACCTCTACTGGa                                                                                                                                     <  2:741822/150‑1 (MQ=255)       cGTTCAGGCCCCCACGCCGCAGGCCCATGCCGCGCGCCCGGATGCCAGCGAAGAGCCACAGCACGCGGTACTGGCCTGCAAGAAAATCCTTCATACCTTCGGTATCAAGCCGCGTGCCTGGCGCGCTGGCTTGCCACCTCTACTGGACCg                                                                                                                                  <  1:582072/150‑1 (MQ=255)       cGTTCAGGCCCCCACGCCGCAGGCCCATGCCGCGCGCCCGGATGCCAGCGAAGAGCCACAGCACGCGGTACTGGCCTGCAAGAAAATCCTTCATACCTTCGGTATCAAGCCGCGTGCCTGGCGCGCTGGCTTGCCACCTCTACTGGACCg                                                                                                                                  >  1:373518/1‑150 (MQ=255)                      gccgcAGGCCCATGCCGCGCGCCCGGATGCCAGCGAAGAGCCACAGCACGCGGTACTGGCCTGCAAGAAAATCCTTCATACCTTCGGTATCAAGCCGCGTGCCTGGCGCGCTGGCTTGCCACCTCTACTGGACCGGTTCTACCGCCATgg                                                                                                                   <  1:454870/150‑1 (MQ=255)                               ccATGCCGCGCGCCCGGATGCCAGCGAAGAGCCACAGCACGCGGTACTGGCCTGCAAGAAAATCCTTCATACCTTCGGTATCAAGCCGCGTGCCTGGCGCGCTGGCTTGCCACCTCTACTGGACCGGTTCTACCGCCATGGCTGACGccc                                                                                                          <  2:23484/150‑1 (MQ=255)                                  tGCCGCGCGCCCGGATGCCAGCGAAGAGCCACAGCACGCGGTACTGGCCTGCAAGAAAATCCTTCATACCTTCGGTATCAAGCCGCGTGCCTGGCGCGCTGGCTTGCCACCTCTACTGGACCGGTTCTACCGCCATGGCTGACGCCCCCa                                                                                                       <  2:436915/150‑1 (MQ=255)                                     cgcgcgCCCGGATGCCAGCGAAGAGCCACAGCACGCGGTACTGGCCTGCAAGAAAATCCTTCATACCTTCGGTATCAAGCCGCGTGCCTGGCGCGCTGGCTTGCCACCTCTACTGGACCGGTTCTACCGCCATGGCTGACGCCCCCATcc                                                                                                    <  1:744908/150‑1 (MQ=255)                                      gcgcgcCCGGATGCCAGCGAAGAGCCACAGCACGCGGTACTGGCCTGCAAGAAAATCCTTCATACCTTCGGTATCAAGCCGCGTGCCTGGCGCGCTGGCTTGCCACCTCTACTGGACCGGTTCTACCGCCATGGCTGACGCCCCCATCCt                                                                                                   >  2:486376/1‑150 (MQ=255)                                             cGGATGCCAGCGAAGAGCCACAGCACGCGGTACTGGCCTGCAAGAAAATCCTTCATACCTTCGGTATCAAGCCGCGTGCCTGGCGCGCTGGCTTGCCACCTCTACTGGACCGGTTCTACCGCCATGGCTGACGCCCCCATCCTGATCAcc                                                                                            <  1:214046/150‑1 (MQ=255)                                              ggATGCCAGCGAAGAGCCACAGCACGCGGTACTGGCCTGCAAGAAAATCCTTCATACCTTCGGTATCAAGCCGCGTGCCTGGCGCGCTGGCTTGCCACCTCTACTGGACCGGTTCTACCGCCATGGCTGACGCCCCCATc                                                                                                     <  2:353033/140‑1 (MQ=255)                                              ggATGCCAGCGAAGAGCCACAGCACGCGGTACTGGCCTGCAAGAAAATCCTTCATACCTTCGGTATCAAGCCGCGTGCCTGGCGCGCTGGCTTGCCACCTCTACTGGACCGGTTCTACCGCCATGGCTGACGCCCCCATc                                                                                                     >  1:353033/1‑140 (MQ=255)                                                      gCGAAGAGCCACAGCACGCGGTACTGGCCTGCAAGAAAATCCTTCATACCTTCGGTATCAAGCCGCGTGCCTGGCGCGCTGGCTTGCCACCTCTACTGGa                                                                                                                                     <  2:163673/100‑1 (MQ=255)                                                      gCGAAGAGCCACAGCACGCGGTACTGGCCTGCAAGAAAATCCTTCATACCTTCGGTATCAAGCCGCGTGCCTGGCGCGCTGGCTTGCCACCTCTACTGGa                                                                                                                                     >  1:163673/1‑100 (MQ=255)                                                                                 ccTGCAAGAAAATCCTTCATACCTTCGGTATCAAGCCGCGTGCCTGGCGCGCTGGCTTGCCACCTCTACTGGACCGGTTCTACCGCCATGGCTGACGCCCCCATCCTGATCACCGGCGGTGCCGGCTTCATTGGCTCCCACCTGTGCGAt                                                        <  1:48035/150‑1 (MQ=255)                                                                                  cTGCAAGAAAATCCTTCATACCTTCGGTATCAAGCCGCGTGCCTGGCGCGCTGGCTTGCCACCTCTACTGGACCGGTTCTACCGCCATGGCTGACGCCCCCATCCTGATCACCGGCGGTGCCGGCTTCATTGGCTCCCACCTGTGCGATg                                                       >  1:749663/1‑150 (MQ=255)                                                                                        gAAAATCCTTCATACCTTCGGTATCAAGCCGCGTGCCTGGCGCGCTGGCTTGCCACCTCTACTGGAc                                                                                                                                    <  2:120119/67‑1 (MQ=255)                                                                                        gAAAATCCTTCATACCTTCGGTATCAAGCCGCGTGCCTGGCGCGCTGGCTTGCCACCTCTACTGGAc                                                                                                                                    >  1:120119/1‑67 (MQ=255)                                                                                               cTTCATACCTTCGGTATCAAGCCGCGTGCCTGGCGCGCTGGCTTGCCACCTCTACTGGACCGGTTCTACCGCCATGGCTGACGCCCCCATCCTGATCACCGGCGGTGCCGGCTTCATTGGCTCCCACCTGTGCGATGCGTTGTTGGACaa                                          <  1:118039/150‑1 (MQ=255)                                                                                                ttCATACCTTCGGTATCAAGCCGCGTGCCTGGCGCGCTGGCTTGCCACCTCTACTGGACCGGTTCTACCGCCATGGCTGACGCCCCCATCCTGATCACCGGCGGTGCCGGCTTCATTGGCTCCCACCTGTGCGATGCGTTGTTGGAc                                            >  1:40202/1‑147 (MQ=255)                                                                                                ttCATACCTTCGGTATCAAGCCGCGTGCCTGGCGCGCTGGCTTGCCACCTCTACTGGACCGGTTCTACCGCCATGGCTGACGCCCCCATCCTGATCACCGGCGGTGCCGGCTTCATTGGCTCCCACCTGTGCGATGCGTTGTTGGAc                                            <  2:40202/147‑1 (MQ=255)                                                                                                ttCATACCTTCGGTATCAAGCCGCGTGCCTGGCGCGCTGGCTTGCCACCTCTACTGGACCGGTTCTACCGCCATGGCTGACGCCCCCATCCTGATCACCGGCGGTGCCGGCTTCATTGGCTCCCACCTGTGCGATGCGTTGTTGGACaaa                                         <  1:42314/150‑1 (MQ=255)                                                                                                 tCATACCTTCGGTATCAAGCCGCGTGCCTGGCGCGCTGGCTTGCCACCTCTACTGGACCGGTTCTACCGCCATg                                                                                                                    >  2:220650/1‑74 (MQ=255)                                                                                                 tCATACCTTCGGTATCAAGCCGCGTGCCTGGCGCGCTGGCTTGCCACCTCTACTGGACCGGTTCTACCGCCATg                                                                                                                    <  1:220650/74‑1 (MQ=255)                                                                                                        ttCGGTATCAAGCCGCGTGCCTGGCGCGCTGGCTTGCCACCTCTACTGGACCGGTTCTACCGCCATGGCTGACGCCCCCATCCTGATCACCGGCGGTGCCGGCTTCATTGGCTCCCACCTGTGCGATGCGTTGTTGGACAAAGGCTACGc                                 >  1:368320/1‑150 (MQ=255)                                                                                                           ggtggcaagccagcgcgccaggcacgcggcttgataccTCTACTGGACCGGTTCTACCGCCATGGCTGACGCCCCCATCCTGATCACCGGCGGTGCCGGCTTCATTGGCTCCCACCTGTGCGATGCGTTGTTGGACAAAGGCTACGCCGt                              >  2:433568‑M2/39‑150 (MQ=255)                                                                                                           GGTATCAAGCCGCGTGCCTGGCGCGCTGGCTTGCCACCTCTACTGGACCGGTTCTACCGCCATGGCTGACGCCCCCATCCTGATCACCGGCGGTGCCGGCTTCATTGGCTCCCACCTGTGCGATGCGTTGTTGGACAAAGGCTACGCCGt                              >  2:749663‑M1/1‑150 (MQ=255)                                                                                                            gtggcaagccagcgcgccaggcacgcggcttgataccTCTACTGGACCGGTTCTACCGCCATGGCTGATGCCCCCATCCTGATCACCGGCGGTGCCGGCTTCATTGGCTCCCACCTGTGCGATGCGTTGTTGGACAAAGGCTACGCCGTa                             >  1:96653‑M2/38‑150 (MQ=255)                                                                                                            GTATCAAGCCGCGTACTTGGCGCGCTGGCTTGCCACCTCTACTGGACCGGTTCTACCGCCATGGCTGACGCCCCCATCCTGATCACCGGCGGTGCCGGCTTCATTGGCTCCCACCTGTGCGATGCGTTGTTGGACAAAGGCTACGCCGTa                             <  1:215538‑M1/150‑1 (MQ=255)                                                                                                             tggcaagccagcgcgccaggcacgcggcttgataccTCTACTGGACCGGTTCTACCGCCATGGCTGATGCCCCCATCCTGATCACCGGCGGTGCCGGCTTCATTGGCTCCCACCTGTGCGATGCGTTGTTGGACAAAGGCTACGCCGTAc                            <  2:96653‑M2/114‑1 (MQ=255)                                                                                                                     cgcgTGCCTGGCGCGCTGGCTTGCCACCTCTACTGGACCGGTTCTACCGCCATGGCTGACGCCCCCATCCTGATCACCGGCGGTGCCGGCTTCATTGGCTCCCACCTGTGCGATGCGTTGTTGGACAAAGGCTACGCCGTACGCATtctc                    <  2:582363/150‑1 (MQ=255)                                                                                                                          gCCTGGCGCGCTGGCTTGCCACCTCTACTGGCCCGGGTGTAACGCCATGGCTGACGCCCCCAGCCTGATCACCGGCGGTGCCGGCTTCATTGGCTCCCACCTGTGCGATGCGTTGTTGGACAAAGGCTACGCCGTACGCATTCTcgacga               <  1:532864/150‑1 (MQ=255)                                                                                                                            cTGGCGCGCTGGCTTGCCACCTCTACTGGACCGGTTCTACCGCCATGGCTGACGCCCCCATCCTGATCACCGGCGGTGCCGGCTTCATTGGCTCCCACCTGTGCGATGCGTTGTTGGACAAAGGCTACGCCGTACGCATTCTCGACGACt             >  1:259005/1‑150 (MQ=255)                                                                                                                                cgcgcTGGCTTGCCACCTCTACTGGACCGGTTCTACCGCCATGGCTGACGCCCCCATCCTGATCACCGGCGGTGCCGGCTTCATTGGCTCCCACCTGTGCGATGCGTTGTTGGACAAAGGCTACGCCGTACGCATTCTCGACGACTtctc         <  1:486376/150‑1 (MQ=255)                                                                                                                                 gcgcTGGCTTGCCACCTCTACTGGACCGGTTCTACCGCCATGGCTGACGCCCCCATCCTGATCACCGGCGGTGCCGGCTTCATTGGCTCCCACCTGTTCGATGCGTTGTTGGACAAAGGCTACGCCGTACGCATTCTcga                  >  1:306901/1‑140 (MQ=255)                                                                                                                                 gcgcTGGCTTGCCACCTCTACTGGACCGGTTCTACCGCCATGGCTGACGCCCCCATCCTGATCACCGGCGGTGCCGGCTTCATTGGCTCCCACCTGTGCGATGCGTTGTTGGACAAAGGCTACGCCGTACGCATTCTcga                  <  2:306901/140‑1 (MQ=255)                                                                                                                                   gcTGGCTTGCCACCTCTACTGGACCGGTTCTACCGCCATGGCTGACGCCCCCATCCTGATCACCGGCGGTGCCGGCTTCATTGGCTCCCACCTGTGCGATGCGTTGTTGGACAAAGGCTACGCCGTACGCATTCTCGACGACTTCTCCAc      <  1:440674/150‑1 (MQ=255)                                                                                                                                       gCTTGCCACCTCTACTGGACCGGTTCTACCGCCATGGCTGACGCCCCCATCCTGATCACCGGCGGTGCCGGCTTCATTGGCTCCCACCTGTGCGATGCGTTGTTGGACAAAGGCTACGCCGTACGCATTCTCGACGACTTCTCCAccggc  <  2:627443/150‑1 (MQ=255)                                                                                                                                         ttGCCACCTCTACTGGACCGGTTCTACCGCCATGGCTGACGCCCCCATCCTGATCACCGGCGGTGCCGGCTTCATTGGCTCCCACCTGTGCGATGCGTTGTTGGACAAAGGCTACGCCGTACGCATTCTcgacga               <  2:592187/135‑1 (MQ=255)                                                                                                                                         ttGCCACCTCTACTGGACCGGTTCTACCGCCATGGCTGACGCCCCCATCCTGATCACCGGCGGTGCCGGCTTCATTGGCTCCCACCTGTGCGATGCGTTGTTGGACAAAGGCTACGCCGTACGCATTCTcgacga               >  1:592187/1‑135 (MQ=255)                                                                                                                                              accTCTACTGGACCGGTTCTACCGCCATGGCTGACGCCCCCATCCTGATCACCGGCGGTGCCGGCtt                                                                              <  1:213297‑M2/64‑1 (MQ=255)                                                                                                                                              accTCTACTGGACCGGTTCTACCGCCATGGCTGACGCCCCCATCCTGATCACCGGCGGTGCCGGCtt                                                                              >  2:213297‑M2/4‑67 (MQ=255)                                                                                                                                                 |                                                                                                                                            GCTGGCCGTTCAGGCCCCCACGCCGCAGGCCCATGCCGCGCGCCCGGATGCCAGCGAAGAGCCACAGCACGCGGTACTGGCCTGCAAGAAAATCCTTCATACCTTCGGTATCAAGCCGCGTGCCTGGCGCGCTGGCTTGCCACCTCTACTGGACCGGTTCTACCGCCATGGCTGACGCCCCCATCCTGATCACCGGCGGTGCCGGCTTCATTGGCTCCCACCTGTGCGATGCGTTGTTGGACAAAGGCTACGCCGTACGCATTCTCGACGACTTCTCCACCGGC  >  NC_002947/590590‑590873

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.