New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1436861 =	35 (1.240)	3 (0.110)	3/236	NT	8.5%	coding (210/948 nt)	PP_1257	1‑pyrroline‑4‑hydroxy‑2‑carboxylate deaminase
	?	NC_002947	1436901 =	31 (1.150)					coding (170/948 nt)	PP_1257	1‑pyrroline‑4‑hydroxy‑2‑carboxylate deaminase

TGCTTCTGGGCGATCAGCGAAGCACCGCGGCTGAGCACGCGGGGGATGACCATCAGGCCGGCGGCGCCAACCTTGGCGGCGTGTGCAGCATGCGAAACCGCCTCACGGGTGTTCACTGCGCCCGTGCCGACGATGGTCGGGATGCCGGCCGCCACCAGGCGCGCCACGCCCTCCTGGCGCTCGGCCTCTGTCAGCAGCGGCCAGTCACCCATCGAGCCGCAGTACACCACCGCGCTCATGCCGGCCTCGATCAGCTCGCGGCCCTTGCGCACCAGGGCGTCGAA  >  NC_002947/1436715‑1436998                                                                                                                                                   |                                                                                                                                          tGCTTCTGGGCGATCAGCGAAGCACCGCGGCTGAGCACGCGGGGGATGACCATCAGGCCGGCGGCGCCAACCTTGGCGGCGTGTGCAGCATGCGAAACCGCCTCACGGGTGTTCACTGCGCCCGTGCCGACGATGGTCGGGATgccggcc                                                                                                                                        >  1:629598/1‑150 (MQ=255)       tGGGCGATCAGCGAAGCACCGCGGCTGAGCACGCGGGGGATGACCATCAGGCCGGCGGCGCCAACCTTGGCGGCGTGTGCAGCATGCGAAACCGCCTCACGGGTGTTCACTGCGCCCGTGCCGACGATGGTCGGGATGCCGGCCGccacc                                                                                                                                  >  1:259811/1‑150 (MQ=255)                aGCGAAGCACCGCGGCTGAGCACGCGGGGGATGACCATCAGGCCGGCGGCGCCAACCTTGGCGGCGTGTGCAGCATGCGAAACCGCCTCACGGGTGTTCACTGCGCCCGTGCCGACGATGGTCGGGATGCCGGCCGCCACCAGGCGCGcc                                                                                                                         >  2:247702/1‑150 (MQ=255)                     aGCACCGCGGCTGAGCACGCGGGGGATGACCATCAGGCCGGCGGCGCCAACCTTGGCGGCGTGTGCAGCATGCGAAACCGCCTCACGGGTGTTCACTGCGCCCGTGCCGACGATGGTCGGGATGCCGGCCGCCACCAGGCGCGCCACGct                                                                                                                    <  2:517147/150‑2 (MQ=255)                      gCACCGCGGCTGAGCACGCGGGGGATGACCATCAGGCCGGCGGCGCCAACCTTGGCGGCGTGTGCAGCATGCGAAACCGCCTCACGGGTGTTCACTGCGCCCGTGCCGACGATGGTCGGGATGCCGGCCGCCACCAGGCGCGCCACGccc                                                                                                                   >  2:701160/1‑150 (MQ=255)                         ccGCGGCTGAGCACGCGGGGGATGACCATCAGGCCGGCGGCGCCAACCTTGGCGGCGTGTGCAGCATGCGAAACCGCCTCACGGGTGTTCACTGCGCCCGTGCCGACGATGGTCGGGATGCCGGCCGCCACCAGGCGCGCCACGCcctcc                                                                                                                >  1:533107/1‑150 (MQ=255)                            cgGCTGAGCACGCGGGGGATGACCATCAGGCCGGCGGCGCCAACCTTGGCGGCGTGTGCAGCATGCGAAACCGCCTCACGGGTGTTCACTGCGCCCGTGCCGACGATGGTCGGGATGCCGGCCGCCACCAGGCGCGCCACGCCCTCCTgg                                                                                                             <  1:418898/150‑1 (MQ=255)                               cTGAGCACGCGGGGGATGACCATCAGGCCGGCGGCGCCAACCTTGGCGGCGTGTGCAGCATGCGAAACCGCCTCACGGGTGTTCACTGCGCCCGTGCCGACGATGGTCGGGATGCCGGCCGCCACCAGGCGCGCCACGCCCTCCTGgcgc                                                                                                          <  1:260916/150‑1 (MQ=255)                                   gCACGCGGGGGATGACCATCAGGCCGGCGGCGCCAACCTTGGCGGCGTGTGCAGCATGCGAAACCGCCTCACGGGTGTTCACTGCGCCCGTGCCGACGATGGTCGGGATGCCGGCCGCCACCAGGCGCGCCACGCCCTCCTGGCGCTCgg                                                                                                      >  1:556442/1‑150 (MQ=255)                                        cgGGGGATGACCATCAGGCCGGCGGCGCCAACCTTGGCGGCGTGTGCAGCATGCGAAACCGCCTCACGGGTGTTCACTGCGCCCGTGCCGACGATGGTCGGGATGCCGGCCGCCACCAGGCGCGCCACGCCCTCCTGGCGCTCGGCctct                                                                                                 <  1:493283/150‑1 (MQ=255)                                             gATGACCATCAGGCCGGCGGCGCCAACCTTGGCGGCGTGTGCAGCATGCGAAACCGCCTCACGGGTGTTCACTGCGCCCGTGCCGACGATGGTCGGGATGCCGGCCGCCACCAGGCGCGCCACGCCCTCCTGGCGCTCGGCCTCTGTcag                                                                                            >  2:608813/1‑150 (MQ=255)                                                 ttcgacgccctggtgcgcaagggccgcgagctgatcgaggccggcatgagcgcggtggtgtactgcggctcgatgggtgactggccgctgctgacagaGGCCGCCACCAGGCGCGCCACGCCCTCCTGGCGCTCGGCCTCTGTCagcagc                                                                                        >  1:21355‑M1/99‑150 (MQ=255)                                                         gCCGGCGGCGCCAACCTTGGCGGCGTGTGCAGCATGCGAAACCGCCTCACGGGTGTTCACTGCGCCCGTGCCGACGATGGTCGGGATGCCGGCCGCCACCAGGCGCGCCACGCCCTCCTGGCGCTCGGCCTCTGTCAGCAGCGGCCAGTc                                                                                >  1:735106/1‑150 (MQ=255)                                                               ggcgCCAACCTTGGCGGCGTGTGCAGCATGCGAAACCGCCTCACGGGTGTTCACTGCGCCCGTGCCGACGATGGTCGGGATGCCGGCCGCCACCAGGCGCGCCACGCCCTCCTGGCGCTCGTCCTCTGTCAGCAGCGGCCAGTCACCCAt                                                                          <  2:629598/150‑1 (MQ=255)                                                                  gcCAACCTTGGCGGCGTGTGCAGCATGCGAAACCGCCTCACGGGTGTTCACTGCGCCCGTGCCGACGATGGTCGGGATGCCGGCCGCCACCAGGCGCGCCACGCCCTCCTGGCGCTCGGCCTCTGTCAGCAGCGGCCAGTCACCCATCGa                                                                       >  1:36314/1‑150 (MQ=255)                                                                   ccAACCTTGGCGGCGTGTGCAGCATGCGAAACCGCCTCACGGGTGTTCACTGCGCCCGTGCCGACGATGGTCGGGATGCCGGCCGCCACCAGGCGCGCCACGCCCTCCTGGCGCTCGGCCTCTGTCAGCAGCGGCCAGTCACCCATCGAg                                                                      <  2:316845/150‑1 (MQ=255)                                                                        cTTGGCGGCGTGTGCAGCATGCGAAACCGCCTCACGGGTGTTCACTGCGCCCGTGCCGACGATGGTCGGGATGCCGGCCGCCACCAGGCGCGCCACGCCCTCCTGGCGCTCGGCCTCTGTCAGCAGCGGCCAGTCACCCATCGAGCCGCa                                                                 <  1:608813/150‑1 (MQ=255)                                                                                  tgtgCAGCATGCGAAACCGCCTCACGGGTGTTCACTGCGCCCGTGCCGACGATGGTCGGGATGCCGGCCGCCACCAGGCGCGCCACGCCCTCCTGGCGCTCGGCCTCTGTCAGCAGCGGCCAGTCACCCATc                                                                         >  2:704328/1‑132 (MQ=255)                                                                                  tgtgCAGCATGCGAAACCGCCTCACGGGTGTTCACTGCGCCCGTGCCGACGATGGTCGGGATGCCGGCCGCCACCAGGCGCGCCACGCCCTCCTGGCGCTCGGCCTCTGTCAGCAGCGGCCAGTCACCCATc                                                                         <  1:704328/132‑1 (MQ=255)                                                                                    tgCAGCATGCGAAACCGCCTCACGGGTGTTCACTGCGCCCGTGCCGACGATGGTCGGGATGCCGGCCGCCACCAGGCGCGCCACGCCCTCCTGGCGCTCGGCCTGTGTCAGCATCGGCCAGTCACCCATCGAGCAGCAGTACACCACcgc                                                     >  1:196098/1‑150 (MQ=255)                                                                                     gcagcaTGCGAAACCGCCTCACGGGTGTTCACTGCGCCCGTGCCGACGATGGTCGGGATGCCGGCCGCCACCAGGCGCGCCACGCCCTCCTGGCGCTCGGCCTCTGTCAGCAGCGGCCAGTAATCCATCGAGCCGCAGTACACCACcgcg                                                    <  1:701160/150‑1 (MQ=255)                                                                                      cagcaTGCGAAACCGCCTCACGGGTGTTCACTGCGCCCGTGCCGACGATGGTCGGGATGCCGGCCGCCACCAGGCGCGCCACGCCCTCCTGGCGCTCGGCCTCTGTCAGCAGCGGCCAGTCACCCATCGAGCCGCAGTACACCACCgcgc                                                   <  2:533107/150‑1 (MQ=255)                                                                                       agcaTGCGAAACCGCCTCACGGGTGTTCACTGCGCCCGTGCCGACGATGGTCGGGATGCCGGCCGCCACCAGGCGCGCCACGCCCTCCTGGCGCTCGGCCTCTGTca                                                                                             >  1:201456/1‑107 (MQ=255)                                                                                       agcaTGCGAAACCGCCTCACGGGTGTTCACTGCGCCCGTGCCGACGATGGTCGGGATGCCGGCCGCCACCAGGCGCGCCACGCCCTCCTGGCGCTCGGCCTCTGTca                                                                                             <  2:201456/107‑1 (MQ=255)                                                                                        gccggcatgagcgcggtggtgtactgcggctcgatgggtgactggccgctgctgacagaGGCCGCCACCAGGCGCGCCACGCCCTCCTGGCGCTCGGc                                                                                                     >  1:127456‑M1/60‑98 (MQ=255)                                                                                        gccggcatgagcgcggtggtgtactgcggctcgatgggtgactggccgctgctgacagaGGCCGCCACCAGGCGCGCCACGCCCTCCTGGCGCTCGGc                                                                                                     <  2:127456‑M1/39‑1 (MQ=255)                                                                                            gCGAAACCGCCTCACGGGTGTTCACTGCGCCCGTGCCGACGATGGTCGGGATGCCGGCCGCCACCAGGCGCGCCACGCCCTCCTg                                                                                                              >  1:45653/1‑85 (MQ=255)                                                                                            gCGAAACCGCCTCACGGGTGTTCACTGCGCCCGTGCCGACGATGGTCGGGATGCCGGCCGCCACCAGGCGCGCCACGCCCTCCTg                                                                                                              <  2:45653/85‑1 (MQ=255)                                                                                                   cGCCTCACGGGTGTTCACTGCGCCCGTGGTGACGATGGTCGGGATGCCGGCCGCCACCAGGCGCGCCACGCCCTCCTGGCGCTCGGCCTCTGTCAGCAGCGGCCAGTCACCCATCGAGCCGCAGTACACCACCGCGCTCATGCCGGCCTc                                      <  1:565185/150‑1 (MQ=255)                                                                                                   cGCCTCACGGGTGTTCACTGCGCCCGTGCCGACGATGGTCGGGATGCCGGCCGCCACCAGGCGCGCCACGCCCTCCTGGCGCTCGGCCTCTGTCAGCAGCGGCCAGTCACCCATCGAGCCGCAGTACACCACCGCGCTCATGCCGGCCTc                                      >  1:747165/1‑150 (MQ=255)                                                                                                     ccTCACGGGTGTTCACTGCGCCCGTGCCGACGATGGTCGGGATGCCGGCCGCCACCAGGCGCGCCACGCCCTCCTGGCGCTCGGCCTCTGTCAGCAGCGGCCAGTCACCCATCGAGCCGCAGTACACCACCGCGCTCATGCCGGCCTCGa                                    <  1:194678/150‑1 (MQ=255)                                                                                                          cGGGTGTTCACTGCGCCCGTGCCGACGATGGTCGGGATGCCGGCCGCCACCAGGCGCGCCACGCCCTCCTGGCGCTCGGCCTCTGTCAGCAGCGGCCAGTCACCCATCGAGCCGCAGTACACCACCGCGCTCATGCCGGCCTCGATCAGc                               <  2:259811/150‑1 (MQ=255)                                                                                                            ggTGTTCACTGCGCCCGTGCCGACGATGGTCGGGATGCCGGCCGCCACCAGGCGCGCCACGCCCTCCTGGCGCTCGGCCTCTGTCAGCAGCGGCCAGTCACCCATCGAGCCGCAGTACACCACCGCGCTCATGCCGGCCTCGATCAGCTc                             >  1:420243/1‑150 (MQ=255)                                                                                                              tgtTCACTGCGCCCGTGCCGACGATGGTCGGGATGCCGGCCGCCACCAGGCGCGCCACGCCCTCCTGGCGCTCGGCCTCTGTCAGCAGCGGCCAGTCACCCATCGAGCCGCAGTACACCACCGCGCTCATGCCGGCCTCGATCAGCTcgc                           <  1:247702/150‑1 (MQ=255)                                                                                                                   aCTGCGCCCGTGCCGACGATGGTCGGGCTGCCGGCCGCCACCAGGCGCGCCACGCCCTCCTGGCGCTCGGCCTCTGTCAGCAGCGTCCAGTCACCCATCGAGCCGCAGTACACCACCGCGCTCATGCCGGCCTCGATCAGCTCGCGGccc                      >  1:663132/1‑150 (MQ=255)                                                                                                                            gTGCCGACGATGGTCGGGATGCCGGCCGCCACCAGGCGCGCCACGCCCTCCTGGCGCTCGGCCTCTGTCAGCAGCGGCCAGTCACCCATCGAGCCGCAGTACACCACCGCGCTCATGCCGGCCTCGATCAGCTCGCGGCCCTTGCGCAcc             <  2:36314/150‑1 (MQ=255)                                                                                                                             tGCCCACGATGGTCGGGATGCCGGCCGCCACCAGGCGCGCCACGCCCTCCTGGCGCTCGGCCTCTGTCAGCAGCGGCCAGTCACCCATCGAGCCGCAGTACACCACCGCGCTCATGCCGGCCTCGATCAGCTCGCGGCCCTTGCGCACCa            <  1:269362/150‑1 (MQ=255)                                                                                                                                      tGGTCGGGATGCCGGCCGCCACCAGGCGCGCCACGCCCTCCTGGCGCTCGGCCTCTGTCAGCAGCGGCCAGTCACCCATCGAGCCGCAGTACACCACCGCGCTCATGCCGGCCTCGATCAGCTCGCGGCCCTTGCGCACCAGGGCGTCGa   >  2:589516/1‑150 (MQ=255)                                                                                                                                       ggTCGGGATGCCGGCCGCCACCAGGCGCGCCACGCCCTCCTGGCGCTCGGCCTCTGTCAGCAGCGGCCAGTCACCCATCGAGCCGCAGTACACCACCGCGCTCATGCCGGCCTCGATCAGCTCGCGGCCCTTGCGCACCAGGGCGTCGaa  <  2:556442/150‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                          TGCTTCTGGGCGATCAGCGAAGCACCGCGGCTGAGCACGCGGGGGATGACCATCAGGCCGGCGGCGCCAACCTTGGCGGCGTGTGCAGCATGCGAAACCGCCTCACGGGTGTTCACTGCGCCCGTGCCGACGATGGTCGGGATGCCGGCCGCCACCAGGCGCGCCACGCCCTCCTGGCGCTCGGCCTCTGTCAGCAGCGGCCAGTCACCCATCGAGCCGCAGTACACCACCGCGCTCATGCCGGCCTCGATCAGCTCGCGGCCCTTGCGCACCAGGGCGTCGAA  >  NC_002947/1436715‑1436998

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.