New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1436861 =	35 (1.240)	3 (0.110)	3/236	NT	8.5%	coding (210/948 nt)	PP_1257	1‑pyrroline‑4‑hydroxy‑2‑carboxylate deaminase
	?	NC_002947	1436901 =	31 (1.150)					coding (170/948 nt)	PP_1257	1‑pyrroline‑4‑hydroxy‑2‑carboxylate deaminase

CGGGGGATGACCATCAGGCCGGCGGCGCCAACCTTGGCGGCGTGTGCAGCATGCGAAACCGCCTCACGGGTGTTCACTGCGCCCGTGCCGACGATGGTCGGGATGCCGGCCGCCACCAGGCGCGCCACGCCCTCCTGGCGCTCGGCCTCTGTCAGCAGCGGCCAGTCACCCATCGAGCCGCAGTACACCACCGCGCTCATGCCGGCCTCGATCAGCTCGCGGCCCTTGCGCACCAGGGCGTCGAAGTCCGGTTTGCGCTCGGCGGTGCACGGGGTCATCAGGGCAGGCAT  >  NC_002947/1436754‑1437043                                                                                                                                                    |                                                                                                                                               cgGGGGATGACCATCAGGCCGGCGGCGCCAACCTTGGCGGCGTGTGCAGCATGCGAAACCGCCTCACGGGTGTTCACTGCGCCCGTGCCGACGATGGTCGGGATGCCGGCCGCCACCAGGCGCGCCACGCCCTCCTGGCGCTCGGCctct                                                                                                                                              <  1:493283/150‑1 (MQ=255)      gATGACCATCAGGCCGGCGGCGCCAACCTTGGCGGCGTGTGCAGCATGCGAAACCGCCTCACGGGTGTTCACTGCGCCCGTGCCGACGATGGTCGGGATGCCGGCCGCCACCAGGCGCGCCACGCCCTCCTGGCGCTCGGCCTCTGTcag                                                                                                                                         >  2:608813/1‑150 (MQ=255)          ttcgacgccctggtgcgcaagggccgcgagctgatcgaggccggcatgagcgcggtggtgtactgcggctcgatgggtgactggccgctgctgacagaGGCCGCCACCAGGCGCGCCACGCCCTCCTGGCGCTCGGCCTCTGTCagcagc                                                                                                                                     >  1:21355‑M1/99‑150 (MQ=255)                  gCCGGCGGCGCCAACCTTGGCGGCGTGTGCAGCATGCGAAACCGCCTCACGGGTGTTCACTGCGCCCGTGCCGACGATGGTCGGGATGCCGGCCGCCACCAGGCGCGCCACGCCCTCCTGGCGCTCGGCCTCTGTCAGCAGCGGCCAGTc                                                                                                                             >  1:735106/1‑150 (MQ=255)                        ggcgCCAACCTTGGCGGCGTGTGCAGCATGCGAAACCGCCTCACGGGTGTTCACTGCGCCCGTGCCGACGATGGTCGGGATGCCGGCCGCCACCAGGCGCGCCACGCCCTCCTGGCGCTCGTCCTCTGTCAGCAGCGGCCAGTCACCCAt                                                                                                                       <  2:629598/150‑1 (MQ=255)                           gcCAACCTTGGCGGCGTGTGCAGCATGCGAAACCGCCTCACGGGTGTTCACTGCGCCCGTGCCGACGATGGTCGGGATGCCGGCCGCCACCAGGCGCGCCACGCCCTCCTGGCGCTCGGCCTCTGTCAGCAGCGGCCAGTCACCCATCGa                                                                                                                    >  1:36314/1‑150 (MQ=255)                            ccAACCTTGGCGGCGTGTGCAGCATGCGAAACCGCCTCACGGGTGTTCACTGCGCCCGTGCCGACGATGGTCGGGATGCCGGCCGCCACCAGGCGCGCCACGCCCTCCTGGCGCTCGGCCTCTGTCAGCAGCGGCCAGTCACCCATCGAg                                                                                                                   <  2:316845/150‑1 (MQ=255)                                 cTTGGCGGCGTGTGCAGCATGCGAAACCGCCTCACGGGTGTTCACTGCGCCCGTGCCGACGATGGTCGGGATGCCGGCCGCCACCAGGCGCGCCACGCCCTCCTGGCGCTCGGCCTCTGTCAGCAGCGGCCAGTCACCCATCGAGCCGCa                                                                                                              <  1:608813/150‑1 (MQ=255)                                           tgtgCAGCATGCGAAACCGCCTCACGGGTGTTCACTGCGCCCGTGCCGACGATGGTCGGGATGCCGGCCGCCACCAGGCGCGCCACGCCCTCCTGGCGCTCGGCCTCTGTCAGCAGCGGCCAGTCACCCATc                                                                                                                      <  1:704328/132‑1 (MQ=255)                                           tgtgCAGCATGCGAAACCGCCTCACGGGTGTTCACTGCGCCCGTGCCGACGATGGTCGGGATGCCGGCCGCCACCAGGCGCGCCACGCCCTCCTGGCGCTCGGCCTCTGTCAGCAGCGGCCAGTCACCCATc                                                                                                                      >  2:704328/1‑132 (MQ=255)                                             tgCAGCATGCGAAACCGCCTCACGGGTGTTCACTGCGCCCGTGCCGACGATGGTCGGGATGCCGGCCGCCACCAGGCGCGCCACGCCCTCCTGGCGCTCGGCCTGTGTCAGCATCGGCCAGTCACCCATCGAGCAGCAGTACACCACcgc                                                                                                  >  1:196098/1‑150 (MQ=255)                                              gcagcaTGCGAAACCGCCTCACGGGTGTTCACTGCGCCCGTGCCGACGATGGTCGGGATGCCGGCCGCCACCAGGCGCGCCACGCCCTCCTGGCGCTCGGCCTCTGTCAGCAGCGGCCAGTAATCCATCGAGCCGCAGTACACCACcgcg                                                                                                 <  1:701160/150‑1 (MQ=255)                                               cagcaTGCGAAACCGCCTCACGGGTGTTCACTGCGCCCGTGCCGACGATGGTCGGGATGCCGGCCGCCACCAGGCGCGCCACGCCCTCCTGGCGCTCGGCCTCTGTCAGCAGCGGCCAGTCACCCATCGAGCCGCAGTACACCACCgcgc                                                                                                <  2:533107/150‑1 (MQ=255)                                                agcaTGCGAAACCGCCTCACGGGTGTTCACTGCGCCCGTGCCGACGATGGTCGGGATGCCGGCCGCCACCAGGCGCGCCACGCCCTCCTGGCGCTCGGCCTCTGTca                                                                                                                                          >  1:201456/1‑107 (MQ=255)                                                agcaTGCGAAACCGCCTCACGGGTGTTCACTGCGCCCGTGCCGACGATGGTCGGGATGCCGGCCGCCACCAGGCGCGCCACGCCCTCCTGGCGCTCGGCCTCTGTca                                                                                                                                          <  2:201456/107‑1 (MQ=255)                                                            cGCCTCACGGGTGTTCACTGCGCCCGTGGTGACGATGGTCGGGATGCCGGCCGCCACCAGGCGCGCCACGCCCTCCTGGCGCTCGGCCTCTGTCAGCAGCGGCCAGTCACCCATCGAGCCGCAGTACACCACCGCGCTCATGCCGGCCTc                                                                                   <  1:565185/150‑1 (MQ=255)                                                            cGCCTCACGGGTGTTCACTGCGCCCGTGCCGACGATGGTCGGGATGCCGGCCGCCACCAGGCGCGCCACGCCCTCCTGGCGCTCGGCCTCTGTCAGCAGCGGCCAGTCACCCATCGAGCCGCAGTACACCACCGCGCTCATGCCGGCCTc                                                                                   >  1:747165/1‑150 (MQ=255)                                                              ccTCACGGGTGTTCACTGCGCCCGTGCCGACGATGGTCGGGATGCCGGCCGCCACCAGGCGCGCCACGCCCTCCTGGCGCTCGGCCTCTGTCAGCAGCGGCCAGTCACCCATCGAGCCGCAGTACACCACCGCGCTCATGCCGGCCTCGa                                                                                 <  1:194678/150‑1 (MQ=255)                                                                   cGGGTGTTCACTGCGCCCGTGCCGACGATGGTCGGGATGCCGGCCGCCACCAGGCGCGCCACGCCCTCCTGGCGCTCGGCCTCTGTCAGCAGCGGCCAGTCACCCATCGAGCCGCAGTACACCACCGCGCTCATGCCGGCCTCGATCAGc                                                                            <  2:259811/150‑1 (MQ=255)                                                                     ggTGTTCACTGCGCCCGTGCCGACGATGGTCGGGATGCCGGCCGCCACCAGGCGCGCCACGCCCTCCTGGCGCTCGGCCTCTGTCAGCAGCGGCCAGTCACCCATCGAGCCGCAGTACACCACCGCGCTCATGCCGGCCTCGATCAGCTc                                                                          >  1:420243/1‑150 (MQ=255)                                                                       tgtTCACTGCGCCCGTGCCGACGATGGTCGGGATGCCGGCCGCCACCAGGCGCGCCACGCCCTCCTGGCGCTCGGCCTCTGTCAGCAGCGGCCAGTCACCCATCGAGCCGCAGTACACCACCGCGCTCATGCCGGCCTCGATCAGCTcgc                                                                        <  1:247702/150‑1 (MQ=255)                                                                            aCTGCGCCCGTGCCGACGATGGTCGGGCTGCCGGCCGCCACCAGGCGCGCCACGCCCTCCTGGCGCTCGGCCTCTGTCAGCAGCGTCCAGTCACCCATCGAGCCGCAGTACACCACCGCGCTCATGCCGGCCTCGATCAGCTCGCGGccc                                                                   >  1:663132/1‑150 (MQ=255)                                                                                     gTGCCGACGATGGTCGGGATGCCGGCCGCCACCAGGCGCGCCACGCCCTCCTGGCGCTCGGCCTCTGTCAGCAGCGGCCAGTCACCCATCGAGCCGCAGTACACCACCGCGCTCATGCCGGCCTCGATCAGCTCGCGGCCCTTGCGCAcc                                                          <  2:36314/150‑1 (MQ=255)                                                                                      tGCCCACGATGGTCGGGATGCCGGCCGCCACCAGGCGCGCCACGCCCTCCTGGCGCTCGGCCTCTGTCAGCAGCGGCCAGTCACCCATCGAGCCGCAGTACACCACCGCGCTCATGCCGGCCTCGATCAGCTCGCGGCCCTTGCGCACCa                                                         <  1:269362/150‑1 (MQ=255)                                                                                               tGGTCGGGATGCCGGCCGCCACCAGGCGCGCCACGCCCTCCTGGCGCTCGGCCTCTGTCAGCAGCGGCCAGTCACCCATCGAGCCGCAGTACACCACCGCGCTCATGCCGGCCTCGATCAGCTCGCGGCCCTTGCGCACCAGGGCGTCGa                                                >  2:589516/1‑150 (MQ=255)                                                                                                ggTCGGGATGCCGGCCGCCACCAGGCGCGCCACGCCCTCCTGGCGCTCGGCCTCTGTCAGCAGCGGCCAGTCACCCATCGAGCCGCAGTACACCACCGCGCTCATGCCGGCCTCGATCAGCTCGCGGCCCTTGCGCACCAGGGCGTCGaa                                               <  2:556442/150‑1 (MQ=255)                                                                                                gctgctgacagaggccgagcgccaggagggcgtggcgcgcctggtggcggccTCTGTCAGCAGCGGCCAGTCACCCATCGAGCCGCAGTACACCACCGCGCTCATGCCGGCCTCGATCAGCTCGCGGCCCTTGCGCACCAGGGCGTCGaa                                               >  1:21355‑M2/53‑150 (MQ=255)                                                                                                             gccgagcgccaggagggcgtggcgcgcctggtggcggccTCTGTCAGCAGCGGCCAGTCACCCATCGAGCCGCAGTACACCACCGCGCTCATGCCGGc                                                                                      <  2:127456‑M2/59‑1 (MQ=255)                                                                                                             gccgagcgccaggagggcgtggcgcgcctggtggcggccTCTGTCAGCAGCGGCCAGTCACCCATCGAGCCGCAGTACACCACCGCGCTCATGCCGGc                                                                                      >  1:127456‑M2/40‑98 (MQ=255)                                                                                                                     caGGCGCGCCACGCCCTCCTGGCGCTCGGCCTCTGTCAGCAGCGGCCAGTCACCCATCGAGCCGCAGTACACCACCGCGCTCATGCCGGCCTCGATCAGCTCGCGGCCCTTGCGCACCAGGGCGTCGAAGTCCGGTTTGCGCTCGGCGGt                          >  2:623578/1‑150 (MQ=255)                                                                                                                             ccACGCCCTCCTGGCGCTCGGCCTCTGTCAGCAGCGGCCAGTCACCCATCGAGCCGCAGTACACCACCGCGCTCATGCCGGCCTCGATCAGCTCGCGGCCCTTGCGCACCAGGGCGTCGAAGTCCGGTTTGCGCTCGGCGGTGCACgggg                  >  2:57398/1‑150 (MQ=255)                                                                                                                               aCGCCCTCCTGGCGCTCGGCCTCTGTCAGCAGCGGCCAGTCACCCATCGAGCCGCAGTACACCACCGCGCTCATGCCGGCCTCGATCAGCTCGCGGCCCTTGCGCACCAGGGCGTCGAAGTCCGGTTTGCGCTCGGCGGTGCACGGGGtc                >  1:141161/1‑150 (MQ=255)                                                                                                                                   cctcctGGCGCTCGGCCTCTGTCAGCAGCGGCCAGTCACCCATCGAGCCGCAGTACACCACCGCGCTCATGCCGGCCTCGATCAGCTCGCGGCCCTTGCGCACCAGGGCGTCGAAGTCCGGTTTGCGCTCGGCGGTGCACGGGGtcatca            >  2:520113/1‑150 (MQ=255)                                                                                                                                   cctcctGGCGCTCGGCCTCTGTCAGCAGCGGCCAGTCACCCATCGAGCCGCAGTACACCACCGCGCTCATGCCGGCCTCGATCAGCTCGCGGCCCTTGCGCACCAGGGCGTCGAAGTCCGGTTTGCGCTCGGCGGTGCACGGGGtcatca            >  2:520306/1‑150 (MQ=255)                                                                                                                                       ctGGCGCTCGGCCTCTGTCAGCAGCGGCCAGTCACCCATCGAGCCGCAGTACACCACCGCGCTCATGCCGGCCTCGATCAGCTCGCGGCCCTTGCGCACCAGGGCGTCGAAGTCCGGTTTGCGCTCGGCGGTGCACGGGGTCATCAg           <  1:640354/147‑1 (MQ=255)                                                                                                                                       ctGGCGCTCGGCCTCTGTCAGCAGCGGCCAGTCACCCATCGAGCCGCAGTACACCACCGCGCTCATGCCGGCCTCGATCAGCTCGCGGCCCTTGCGCACCAGGGCGTCGAAGTCCGGTTTGCGCTCGGCGGTGCACGGGGTCATCAg           >  2:640354/1‑147 (MQ=255)                                                                                                                                           cgcTCGGCCTCTGTCAGCAGCGGCCAGTCACCCATCGAGCCGCAGTACACCACCGCGCTCATGCCGGCCTCGATCAGCTCGCGGCCCTTGCGCACCAGGGCGTCGAAGTCCGGTTTGCGCTCGGCGGTGCACGGGGTCATCAGggcaggc    <  1:57398/150‑1 (MQ=255)                                                                                                                                            gcTCGGCCTCTGTCAGCAGCGGCCAGTCACCCATCGAGCCGCAGTACACCACCGCGCTCATGCCGGCCt                                                                                    <  1:622546/69‑1 (MQ=255)                                                                                                                                            gcTCGGCCTCTGTCAGCAGCGGCCAGTCACCCATCGAGCCGCAGTACACCACCGCGCTCATGCCGGCCt                                                                                    >  2:622546/1‑69 (MQ=255)                                                                                                                                             cTCGGCCTCTGTCAGCAGCGGCCAGTCACCCATCGAGCCGCAGTACACCACCGCGCTCATGCCGGCCTCGATCAGCTCGCGGCCCTTGCGCACCAGGGCGTCGAAGTCCGGTTTGCGCTCGGCGGTGCACGGGGTCATCAGGGCAGGCAt  >  1:543816/1‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                               CGGGGGATGACCATCAGGCCGGCGGCGCCAACCTTGGCGGCGTGTGCAGCATGCGAAACCGCCTCACGGGTGTTCACTGCGCCCGTGCCGACGATGGTCGGGATGCCGGCCGCCACCAGGCGCGCCACGCCCTCCTGGCGCTCGGCCTCTGTCAGCAGCGGCCAGTCACCCATCGAGCCGCAGTACACCACCGCGCTCATGCCGGCCTCGATCAGCTCGCGGCCCTTGCGCACCAGGGCGTCGAAGTCCGGTTTGCGCTCGGCGGTGCACGGGGTCATCAGGGCAGGCAT  >  NC_002947/1436754‑1437043

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.