New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3233587 =	11 (0.390)	4 (0.150)	4/230	NT	26.4%	coding (732/948 nt)	GbpR	galactose‑binding protein regulator
	?	NC_002947	3233624 =	12 (0.460)					coding (769/948 nt)	GbpR	galactose‑binding protein regulator

CATCCCTTGGCGACAGCCACAGGGCTGCAGTTGGCCGACCTGGTGAGCTTGACGTGGATCTTGCACCCCATCGGCAGCCCGATGCGCCGTCGCGTCGAAAGCGCATTGCAGGCCGGCGGCATGGTGCAGTCGCTGGATATCGTCGAAACCGCTTCGATCCTGGCGACCACTGCCATGCTCGAAGCGTCCGAAATGATTGCGGTGGTGCCCAATGACGTGGCCCAGCATTATGCCCGCTATGGCATGGTCGCCGTCCTGCCGGTGGAGTTGC  >  NC_002947/3233438‑3233708                                                                                                                                                      |                                                                                                                          tcaagggcaaccgagttgggccgcgagcgcagggtcagcacgccgaggttggccatcgccagtggcaactccaccggcaggacggcgaccatgccatagcgggcataatgctgggccacgtcattgggcaccaccgcaatcatttcggac                                                                                                                           <  1:595116‑M1/1‑1 (MQ=255)     ccTTGGCGACAGCCACAGGGCTGCAGTTGGCCGACCTGGTGAGCTTGACGTGGATCTTGCACCCCATCGGCAGCCCGATGCGCCGTCGCGTCGAAAGCGCATTGCAGGCCGGCGGCATGGTGCAGTCGCTGGATATCGTCGAAACCGCtt                                                                                                                       <  2:320959/150‑1 (MQ=255)                                                      gTGGATCTTGCACCCCATCGGCAGCCCGATGCGCCGTCGCGTCGAAAGCGCATTGCAGGCCGGCGGCATGGTGCAGTCGCTGGATATCGTCGAAACAGCTTCGATCCTGGCGACCACTGCCATGCTCGAAGCGTCCGAAATGATTGCggt                                                                      >  2:296953/1‑150 (MQ=255)                                                                 gcaactccaccggcaggacggcgaccgtgccatagcgggcataatgcttggccacgtcattgggcaccaccgcaatcatttcggaCGCTTCGATCCTGGCGACCACTGCCATGCTCGAAGCGTCCGAAATGATTGCggtggt                                                                   >  1:365226‑M1/86‑142 (MQ=255)                                                                 aCCCCATCGGCAGCCCGATGCGCCGTCGCGTCGAAAGCGCATTGCAGGCCGGCGGCATGGTGCAGTCGCTGGATATCGTCGAAACCGCTTCGATCCTGGCGACAACTGCCATGCTCGATGCGTCCGAAATTATTTCGGGGGGGCCCAGTg                                                           >  2:607600/1‑150 (MQ=255)                                                                      aTCGGCAGCCCGATGCGCCGTCGCGTCGAAAGCGCATTGCAGGCCGGCGGCATGGTGCAGTCGCTGGATATCGTCGAAACCGCTTCGATCCTGGCGACCACTGCCATGCTCGAAGCGTCCGAAATGATTGCGGTGGTGCCCAATGACGTg                                                      >  2:363861/1‑150 (MQ=255)                                                                          ccggcaggacggcgaccatgccatagcgggcataatgctgggccacgtcattgggcaccaccgcaatcatttcggaCGCTTCGATCCTGGCGACCACTGCCATGCTCGaa                                                                                          <  1:282881‑M1/34‑1 (MQ=255)                                                                          ccggcaggacggcgaccatgccatagcgggcataatgctgggccacgtcattgggcaccaccgcaatcatttcggaCGCTTCGATCCTGGCGACCACTGCCATGCTCGaa                                                                                          >  2:282881‑M1/77‑110 (MQ=255)                                                                            aGCCCGATGCGCCGTCGCGTCGAAAGCGCATTGCAGGCCGGCGGCATGGTGCAGTCGCTGGATATCGTCGAAACCGCTTCGATCCTGGCGACCACTGCCATGCTCGAAGCGTCCGAAATGATTGCGGTGGTGCCCAATGACGTGGCCCAg                                                >  1:427926/1‑150 (MQ=255)                                                                              cccGATGCGCCGTCGCGTCGAAAGCGCATTGCAGGCCGGCGGCATGGTGCAGTCGCTGGATATCGTCGAAACCGCTTCGATCCTGGCGACCACTGCCATGCTCGAAGCGTCCGAAATGATTGCGGTGGTGCCCAATGACGTGGCCCAGCa                                              >  1:110100/1‑150 (MQ=255)                                                                                      gcCGTCGCGTCGAAAGCGCATTGCAGGCCGGCGGCATGGTGCAGTCGCTGGATATCGTCGAAACCGCTTCGATCCTGGCGACCACTGCCATGCTCGAAGCGTCCGAAATGATTGCGGTGGTGCCCAATGACGTGGCCCAGCATTATGccc                                      <  2:427926/150‑1 (MQ=255)                                                                                                     gcgcATTGCAGGCCGGCGGCATGGTGCAGTCGCTGGATATCGTCGAAACCGCCTCGATCCTGGCGAc                                                                                                          <  2:191724/67‑1 (MQ=255)                                                                                                     gcgcATTGCAGGCCGGCGGCATGGTGCAGTCGCTGGATATCGTCGAAACCGCCTCGATCCTGGCGAc                                                                                                          >  1:191724/1‑67 (MQ=255)                                                                                                                          tGGTGCAGTCGCTGGATATCGTCGAAACCGCTTCGATCCTGGCGACCACTGCCATGCTCGAAGCGTCCGAAATGATTGCGGTGGTGCCCAATGACGTGGCCCAGCATTATGCCCGCTATGGCATGGTCGCCGTCCTGCCGGTGGAGTTGc  <  2:110100/150‑1 (MQ=255)                                                                                                                                  accaccgcaatcatttcggaCGCTTCGAGCATGGCAGTGGTCGCCAGGATCGAAGCGTCCGAAATGATTGCGGTGGTGCCCAATGACGTGGCCAAGCATTATGCCCGCTATGGCACGGTCGCCGTCCTGCCGGTGGAGTTGc  >  2:365226‑M1/21‑142 (MQ=255)                                                                                                                                              gtcgAAACCGCTTCGATCCTGGCGACCACTGCCATGCTCGAAGCGTCCGAAATGATTGCggt                                                                      >  2:108141/1‑62 (MQ=255)                                                                                                                                              gtcgAAACCGCTTCGATCCTGGCGACCACTGCCATGCTCGAAGCGTCCGAAATGATTGCggt                                                                      <  1:108141/62‑1 (MQ=255)                                                                                                                                                    aCCGCTTCGATCCTGGCGACCACTGCCATGCTCGAAGCGTCCGAAATGATTGCggtg                                                                     >  1:438202/1‑57 (MQ=255)                                                                                                                                                    aCCGCTTCGATCCTGGCGACCACTGCCATGCTCGAAGCGTCCGAAATGATTGCggtg                                                                     <  2:438202/57‑1 (MQ=255)                                                                                                                                                      |                                                                                                                          CATCCCTTGGCGACAGCCACAGGGCTGCAGTTGGCCGACCTGGTGAGCTTGACGTGGATCTTGCACCCCATCGGCAGCCCGATGCGCCGTCGCGTCGAAAGCGCATTGCAGGCCGGCGGCATGGTGCAGTCGCTGGATATCGTCGAAACCGCTTCGATCCTGGCGACCACTGCCATGCTCGAAGCGTCCGAAATGATTGCGGTGGTGCCCAATGACGTGGCCCAGCATTATGCCCGCTATGGCATGGTCGCCGTCCTGCCGGTGGAGTTGC  >  NC_002947/3233438‑3233708

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.