New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5636524 =	25 (0.890)	3 (0.110)	3/234	NT	10.8%	coding (841/1803 nt)	PP_4948	acyl‑CoA dehydrogenase family protein
	?	NC_002947	5636548 =	26 (0.970)					coding (865/1803 nt)	PP_4948	acyl‑CoA dehydrogenase family protein

GCCCAAGTACCACGTAAACCCGAACGGCAGCCGTGGCCCGCGCAACGATGTGCTGCTGGCCGGGCTGTTCCACAAGATGGGCTGGCGTGGCACCACCTCGACCGCGCTGAACTTCGGCGACAATGGCCAGTGCGTCGGGTACCTGGTCGGCCAGCCGCACCAGGGCCTGGCCTGCATGTTCCAGATGATGAACGAGGCGCGGATAGGCGTAGGCATGGGCGCGGTGATGCTGGGTTACGCCGGCTACCTTTACTCCCTGGAATACGCTCGCCAGC  >  NC_002947/5636376‑5636650                                                                                                                                                     |                                                                                                                               gCCCAAGTACCACGTAAACCCGAACGGCAGCCGTGGCCCGCGCAACGATGTGCTGCTGGCCGGGCTGTTCCACAAGATGGGCTGGCGTGGCACCACCTCGACCGCGCTGAACTTCGGCGACACTGGCCAGTGCGTCGGGTACCTGGTCgg                                                                                                                               >  2:91170/1‑150 (MQ=255)   ccAAGTACCACGTAAACCCGAACGGCAGCCGTGGCCCGCGCAACGATGTGCTGCTGGCCGGGCTGTTCCACAAGATGGGCTGGCGTGGCACCACCTCGACCGCGCTGAACTTCGGCGACAATGGCCAGTGCGTCGGGTACCTGGTCGGcc                                                                                                                             >  1:514528/1‑150 (MQ=255)     aaGTACCACGTAAACCCGAACGGCAGCCGTGGCCCGCGCAACGATGTGCTGCTGGCCGGGCTGTTCCACAAGATGGGCTGGCGTGGCACCACCTCGACCGCGCTGAACTTCGGCGACAATGGCCAGTGCGTCGGGTACCTGGTCGGCCAg                                                                                                                           >  2:128820/1‑150 (MQ=255)     aaGTACCACGTAAACCCGAACGGCAGCCGTGGCCCGCGCAACGATGTGCTGCTGGCCGGGCTGTTCCACAAGATGGGCTGGCGTGGCACCACCTCGACCGCGCTGAACTTCGGCGACAATGGCCAGTGCGTCGGGTACCTGGTCGGCCAg                                                                                                                           >  1:42089/1‑150 (MQ=255)             cGTAAACCCGAACGGCAGCCGTGGCCCGCGCAACGTTGTGCTGCTGGCCGGGCTGTTCCACAAGATGGGCTGGCGTGGCACCACCTCGACCGCGCTGAACTTCGGCGACAATGGCCAGTGCGTCGGGTACCTGGTCGGCCAGCCGCACCa                                                                                                                   >  2:322627/1‑150 (MQ=255)                     cGAACGGCAGCCGTGGCCCGCGCAACGATGTGCTGCTGGCCGGGCTGTTCCACAAGATGGGCTGGCGTGGCACCACCTCGACCGCGCTGAACTTCGGCGACAATGGCCAGTGCGTCGGGTACCTGGTCGGCCAGCCGCACCAGggcctgg                                                                                                           >  1:639413/1‑150 (MQ=255)                              gCCGTGGCCCGCGCAACGATGTGCTGCTGGCCGGGCTGTTCCACAAGATGGGCTGGCGTGGCACCACCTCGACCGCGCTGAACTTCGGCGACAATGGCCAGTGCGTCGGGTACCTGGTCGGCCAGCCGCACCAGGGCCTGGCCTGCATGt                                                                                                  >  2:665580/1‑150 (MQ=255)                                       cgcgCAACGATGTGCTGCTGGCCGGGCTGTTCCACAAGATGGGCTGGCGTGGCACCACCTCGACCGCGCTGAACTTCGGCGACAATGGCCAGTGCGTCGGGTACCTGGTCGGCCAGCCGCACCAGGGCCTGGCCTGCATGTTCCAgatga                                                                                         <  1:128820/150‑1 (MQ=255)                                              cGATGTGCTGCTGGCCGGGCTGTTCCACAAGATGGGCTGGCGTGGCACCACCGCGACCGCGCTGAACTTCGGCGACAATGGCCAGTGCGTCGGGTACCTCGTCGGTCAGCCGCACCAGGGCCTGGCCTGCATGTTCCAGATGATGAACGa                                                                                  <  2:293350/150‑1 (MQ=255)                                               gATGTGCTGCTGGCCGGGCTGTTCCACAAGATGGGCTGGCGTGGCACCACCTCGACCGCGCTGAACTTCGGCGACAATGGCCAGTGCGTCGGGTACCTGGTCGGCCAGCCGCACCAGGGCCTGGCCTGCATGTTCCAGATGATGAACGAg                                                                                 <  2:82049/150‑1 (MQ=255)                                               gATGTGCTGCTGGCCGGGCTGTTCCACAAGATGGGCTGGCGTGGCACCACCTCGACCGCGCTGAACTTCGGCGACAATGGCCAGTGCGTCGGGTACCTGGTCGGCCAGCCGCACCAGGGCCTGGCCTGCATGTTCCAGATGATGAACGAg                                                                                 <  1:28957/150‑1 (MQ=255)                                               gATGTGCTGCTGGCCGGGCTGTTCCACAAGATGGGCTGGCGTGGCACCACCTCGACCGCGCTGAACTTCGGCGACAATGGCCAGTGCGTCGGGTACCTGGTCGGCCAGCCGCACCAGGGCCTGGCCTGCATGTTCCAGATGATGAACGAg                                                                                 >  1:257857/1‑150 (MQ=255)                                                aTGTGCTGCTGGCCGGGCTGTTCCACAAGATGGGCTGGCGTGGCACCACCTCGACCGCGCTGAACTTCGGCGACAATGGCCAGTGCGTCGGGTACCTGGTCGGCCAGCCGCACCAGGGCCTCGCCTGCATGTTCCAGATGATGAACGAgg                                                                                <  1:665580/150‑1 (MQ=255)                                                          attccagggagtaaaggtagccggcgtaacccagcatcaccgcgcccatgcctacgcctatccgcgcctcgttcatcatctggaacatgcaGGCCAGCCGCACCAGGGCCTGGCCTGCATGTTCCAga                                                                                            <  2:673649‑M1/37‑1 (MQ=255)                                                          attccagggagtaaaggtagccggcgtaacccagcatcaccgcgcccatgcctacgcctatccgcgcctcgttcatcatctggaacatgcaGGCCAGCCGCACCAGGGCCTGGCCTGCATGTTCCAga                                                                                            >  1:673649‑M1/92‑128 (MQ=255)                                                           gCCGGGCTGTTCCACAAGATGGGCTGGCGTGGCACCACCTCGACCGCGCTGAACTTCGGCGACAATGGCCAGTGCGTCGGGTACCTGGTCGGCCAGCCGCACCAGGGCCTGGCCTGCATGTTCCAGATGATGAACGAGGCGCGGATAGGc                                                                     <  1:221521/150‑1 (MQ=255)                                                               ggCTGTTCCACAAGATGGGCTGGCGTGGCACCACCTCGACCGCGCTGAACTTCGGCGACAATGGCCAGTGCGTCCGGCACCTGGTCGGCCATCCGCACCAGGGCCTGGCCTGCATGTTCCAGATGATGAACGAGGCGCGGATAGGCGTAg                                                                 <  1:91170/150‑1 (MQ=255)                                                                     tCCACAAGATGGGCTGGCGTGGCACCACCTCGACCGCGCTGAACTTCGGCGACAATGGCCAGTGCGTCGGGTACCTGGTCGGCCAGCCGCACCAGGGCCTGGCCTGCATGTTCCAGATGATGAACGAGGCGCGGATAGGCGTAGGCATgg                                                           <  2:639413/150‑1 (MQ=255)                                                                        acaAGATGGGCTGGCGTGGCACCACCTCGACCGCGCTGAACTTCGGCGACAATGGCCAGTGCGTCGGGTACCTGGTCGGCCAGCCGCACCAGGGCCTGGCCTGCATGTTCCAgatgat                                                                                        >  1:701390/1‑118 (MQ=255)                                                                        acaAGATGGGCTGGCGTGGCACCACCTCGACCGCGCTGAACTTCGGCGACAATGGCCAGTGCGTCGGGTACCTGGTCGGCCAGCCGCACCAGGGCCTGGCCTGCATGTTCCAgatgat                                                                                        <  2:701390/118‑1 (MQ=255)                                                                               gggCTGGCGTGGCACCACCTCGACCGCGCTGAACTTCGGCGACAATGGCCAGTGCGTCGGGTACCTGGTCGGCCAGCCGCACCAGGGCCTGGCCTGCATGTTCCAGATGATGAACGAGGCGCGGATAGGCGTAGGCATGGGCGCGGTGAt                                                 <  1:322627/150‑1 (MQ=255)                                                                                 gCTGGCGTGGCACCACCTCGACCGCGCTGAACTTCGGCGACAATGGCCAGTGCGTCGGGTACCTGGTCGGCCAGCCGCACCAGGGCCTGGCCTGCATGTTCCa                                                                                              >  2:54246/1‑103 (MQ=255)                                                                                 gCTGGCGTGGCACCACCTCGACCGCGCTGAACTTCGGCGACAATGGCCAGTGCGTCGGGTACCTGGTCGGCCAGCCGCACCAGGGCCTGGCCTGCATGTTCCa                                                                                              <  1:54246/103‑1 (MQ=255)                                                                                  cgggCGTGCCACCACCTCGACCGCGCTGAACGTCGGCGACAATGGCCAGTGCGTCGGGTACCTGGTCGGCCAGCCGCACCAGGGTCTGCCCTGCATGGTCCAGATGATGAACGAGGCGCGGATAGGCGTAGGCATGGGCGCCGTGATGCt                                              <  2:90363/148‑1 (MQ=255)                                                                                        tGGCACCACCTCGACCGCGCTGAACTTCGGCGACAATGGCCAGTGCGTCGGGTACCTGGTCGGCCAGCCGCACCAGGGCCTGGCCTGCATGTTCCAGATGATGAACGAGGCGCGGATAGGCGTAGGCATGGGCGCGGTGATGCTGGGTTa                                        <  2:257857/150‑1 (MQ=255)                                                                                               accTCGACCGCGCTGAACTTCGGCGACAATGGCCAGTGCGTCGGGTACCTGGTCGGCCAGCCGCACCAGGGCCTGGCCTGCATGTTCCAGATGATGAACGAGGCGCGGATAGGCGTAGGCACGGGCGCGGTGATGCTGGGTTACGCCGGc                                 <  2:42089/150‑1 (MQ=255)                                                                                                ccTCGACCGCGCTGAACTTCGGCGACAATGGCCAGTGCGTCGGGTACCTGGTCGGCCAGCCGCACCAGGGCCTGGCCTGCATGTTCCAgatga                                                                                         >  2:370413/1‑93 (MQ=255)                                                                                                ccTCGACCGCGCTGAACTTCGGCGACAATGGCCAGTGCGTCGGGTACCTGGTCGGCCAGCCGCACCAGGGCCTGGCCTGCATGTTCCAgatga                                                                                         <  1:370413/93‑1 (MQ=255)                                                                                                             gAACTTCGGCGACAATGGCCAGTGCGTCGGGTACCTGGTCGGCCAGCCGCACCAGGGCCTGGCCTGCATGTTCCAGATGATGAACGAGGCGCGGATAGGCGTAGGCATGGGCGCGGTGATGCTGGGTTACGCCGGCTACCTTTACTCCCt                   <  2:514528/150‑1 (MQ=255)                                                                                                                              tcgttcatcatctggaacatgcaGGCCAGGCCCTGGTGCGGCTGGCCTGCATGTTCCAGATGATGAACGAGGCGCGGATAGGCGTAGGCATGGGCGCGGTGATGCTGGGTTACGCCGGCTACCTTTACTCCCTGGAATACGCTCGCCAGc  <  1:585991‑M1/127‑1 (MQ=255)                                                                                                                                                     |                                                                                                                               GCCCAAGTACCACGTAAACCCGAACGGCAGCCGTGGCCCGCGCAACGATGTGCTGCTGGCCGGGCTGTTCCACAAGATGGGCTGGCGTGGCACCACCTCGACCGCGCTGAACTTCGGCGACAATGGCCAGTGCGTCGGGTACCTGGTCGGCCAGCCGCACCAGGGCCTGGCCTGCATGTTCCAGATGATGAACGAGGCGCGGATAGGCGTAGGCATGGGCGCGGTGATGCTGGGTTACGCCGGCTACCTTTACTCCCTGGAATACGCTCGCCAGC  >  NC_002947/5636376‑5636650

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.