New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5636524 =	25 (0.890)	3 (0.110)	3/234	NT	10.8%	coding (841/1803 nt)	PP_4948	acyl‑CoA dehydrogenase family protein
	?	NC_002947	5636548 =	26 (0.970)					coding (865/1803 nt)	PP_4948	acyl‑CoA dehydrogenase family protein

GCCGTGGCCCGCGCAACGATGTGCTGCTGGCCGGGCTGTTCCACAAGATGGGCTGGCGTGGCACCACCTCGACCGCGCTGAACTTCGGCGACAATGGCCAGTGCGTCGGGTACCTGGTCGGCCAGCCGCACCAGGGCCTGGCCTGCATGTTCCAGATGATGAACGAGGCGCGGATAGGCGTAGGCATGGGCGCGGTGATGCTGGGTTACGCCGGCTACCTTTACTCCCTGGAATACGCTCGCCAGCGGCCGCAGGGCCGACTGCCGGACAACAAGGACCCA  >  NC_002947/5636405‑5636685                                                                                                                                                |                                                                                                                                          gCCGTGGCCCGCGCAACGATGTGCTGCTGGCCGGGCTGTTCCACAAGATGGGCTGGCGTGGCACCACCTCGACCGCGCTGAACTTCGGCGACAATGGCCAGTGCGTCGGGTACCTGGTCGGCCAGCCGCACCAGGGCCTGGCCTGCATGt                                                                                                                                     >  2:665580/1‑150 (MQ=255)          cgcgCAACGATGTGCTGCTGGCCGGGCTGTTCCACAAGATGGGCTGGCGTGGCACCACCTCGACCGCGCTGAACTTCGGCGACAATGGCCAGTGCGTCGGGTACCTGGTCGGCCAGCCGCACCAGGGCCTGGCCTGCATGTTCCAgatga                                                                                                                            <  1:128820/150‑1 (MQ=255)                 gctggcgagcgtattccagggagtaaaggtagccggcgtaacccagcatcaccgcgcccatgcctacgcctatccgcgcctcgttcatcatctggaacatgcaggccagccgcaccagggcctggccTGCATGTTCCAGATGATGAACGa                                                                                                                     <  1:585991‑M2/23‑1 (MQ=255)                 cGATGTGCTGCTGGCCGGGCTGTTCCACAAGATGGGCTGGCGTGGCACCACCGCGACCGCGCTGAACTTCGGCGACAATGGCCAGTGCGTCGGGTACCTCGTCGGTCAGCCGCACCAGGGCCTGGCCTGCATGTTCCAGATGATGAACGa                                                                                                                     <  2:293350/150‑1 (MQ=255)                  gATGTGCTGCTGGCCGGGCTGTTCCACAAGATGGGCTGGCGTGGCACCACCTCGACCGCGCTGAACTTCGGCGACAATGGCCAGTGCGTCGGGTACCTGGTCGGCCAGCCGCACCAGGGCCTGGCCTGCATGTTCCAGATGATGAACGAg                                                                                                                    >  1:257857/1‑150 (MQ=255)                  gATGTGCTGCTGGCCGGGCTGTTCCACAAGATGGGCTGGCGTGGCACCACCTCGACCGCGCTGAACTTCGGCGACAATGGCCAGTGCGTCGGGTACCTGGTCGGCCAGCCGCACCAGGGCCTGGCCTGCATGTTCCAGATGATGAACGAg                                                                                                                    <  1:28957/150‑1 (MQ=255)                  gATGTGCTGCTGGCCGGGCTGTTCCACAAGATGGGCTGGCGTGGCACCACCTCGACCGCGCTGAACTTCGGCGACAATGGCCAGTGCGTCGGGTACCTGGTCGGCCAGCCGCACCAGGGCCTGGCCTGCATGTTCCAGATGATGAACGAg                                                                                                                    <  2:82049/150‑1 (MQ=255)                   aTGTGCTGCTGGCCGGGCTGTTCCACAAGATGGGCTGGCGTGGCACCACCTCGACCGCGCTGAACTTCGGCGACAATGGCCAGTGCGTCGGGTACCTGGTCGGCCAGCCGCACCAGGGCCTCGCCTGCATGTTCCAGATGATGAACGAgg                                                                                                                   <  1:665580/150‑1 (MQ=255)                             attccagggagtaaaggtagccggcgtaacccagcatcaccgcgcccatgcctacgcctatccgcgcctcgttcatcatctggaacatgcaGGCCAGCCGCACCAGGGCCTGGCCTGCATGTTCCAga                                                                                                                               <  2:673649‑M1/37‑1 (MQ=255)                             attccagggagtaaaggtagccggcgtaacccagcatcaccgcgcccatgcctacgcctatccgcgcctcgttcatcatctggaacatgcaGGCCAGCCGCACCAGGGCCTGGCCTGCATGTTCCAga                                                                                                                               >  1:673649‑M1/92‑128 (MQ=255)                              gCCGGGCTGTTCCACAAGATGGGCTGGCGTGGCACCACCTCGACCGCGCTGAACTTCGGCGACAATGGCCAGTGCGTCGGGTACCTGGTCGGCCAGCCGCACCAGGGCCTGGCCTGCATGTTCCAGATGATGAACGAGGCGCGGATAGGc                                                                                                        <  1:221521/150‑1 (MQ=255)                                  ggCTGTTCCACAAGATGGGCTGGCGTGGCACCACCTCGACCGCGCTGAACTTCGGCGACAATGGCCAGTGCGTCCGGCACCTGGTCGGCCATCCGCACCAGGGCCTGGCCTGCATGTTCCAGATGATGAACGAGGCGCGGATAGGCGTAg                                                                                                    <  1:91170/150‑1 (MQ=255)                                        tCCACAAGATGGGCTGGCGTGGCACCACCTCGACCGCGCTGAACTTCGGCGACAATGGCCAGTGCGTCGGGTACCTGGTCGGCCAGCCGCACCAGGGCCTGGCCTGCATGTTCCAGATGATGAACGAGGCGCGGATAGGCGTAGGCATgg                                                                                              <  2:639413/150‑1 (MQ=255)                                           acaAGATGGGCTGGCGTGGCACCACCTCGACCGCGCTGAACTTCGGCGACAATGGCCAGTGCGTCGGGTACCTGGTCGGCCAGCCGCACCAGGGCCTGGCCTGCATGTTCCAgatgat                                                                                                                           >  1:701390/1‑118 (MQ=255)                                           acaAGATGGGCTGGCGTGGCACCACCTCGACCGCGCTGAACTTCGGCGACAATGGCCAGTGCGTCGGGTACCTGGTCGGCCAGCCGCACCAGGGCCTGGCCTGCATGTTCCAgatgat                                                                                                                           <  2:701390/118‑1 (MQ=255)                                                  gggCTGGCGTGGCACCACCTCGACCGCGCTGAACTTCGGCGACAATGGCCAGTGCGTCGGGTACCTGGTCGGCCAGCCGCACCAGGGCCTGGCCTGCATGTTCCAGATGATGAACGAGGCGCGGATAGGCGTAGGCATGGGCGCGGTGAt                                                                                    <  1:322627/150‑1 (MQ=255)                                                    gCTGGCGTGGCACCACCTCGACCGCGCTGAACTTCGGCGACAATGGCCAGTGCGTCGGGTACCTGGTCGGCCAGCCGCACCAGGGCCTGGCCTGCATGTTCCa                                                                                                                                 >  2:54246/1‑103 (MQ=255)                                                    gCTGGCGTGGCACCACCTCGACCGCGCTGAACTTCGGCGACAATGGCCAGTGCGTCGGGTACCTGGTCGGCCAGCCGCACCAGGGCCTGGCCTGCATGTTCCa                                                                                                                                 <  1:54246/103‑1 (MQ=255)                                                     cgggCGTGCCACCACCTCGACCGCGCTGAACGTCGGCGACAATGGCCAGTGCGTCGGGTACCTGGTCGGCCAGCCGCACCAGGGTCTGCCCTGCATGGTCCAGATGATGAACGAGGCGCGGATAGGCGTAGGCATGGGCGCCGTGATGCt                                                                                 <  2:90363/148‑1 (MQ=255)                                                           tGGCACCACCTCGACCGCGCTGAACTTCGGCGACAATGGCCAGTGCGTCGGGTACCTGGTCGGCCAGCCGCACCAGGGCCTGGCCTGCATGTTCCAGATGATGAACGAGGCGCGGATAGGCGTAGGCATGGGCGCGGTGATGCTGGGTTa                                                                           <  2:257857/150‑1 (MQ=255)                                                                  accTCGACCGCGCTGAACTTCGGCGACAATGGCCAGTGCGTCGGGTACCTGGTCGGCCAGCCGCACCAGGGCCTGGCCTGCATGTTCCAGATGATGAACGAGGCGCGGATAGGCGTAGGCACGGGCGCGGTGATGCTGGGTTACGCCGGc                                                                    <  2:42089/150‑1 (MQ=255)                                                                   ccTCGACCGCGCTGAACTTCGGCGACAATGGCCAGTGCGTCGGGTACCTGGTCGGCCAGCCGCACCAGGGCCTGGCCTGCATGTTCCAgatga                                                                                                                            <  1:370413/93‑1 (MQ=255)                                                                   ccTCGACCGCGCTGAACTTCGGCGACAATGGCCAGTGCGTCGGGTACCTGGTCGGCCAGCCGCACCAGGGCCTGGCCTGCATGTTCCAgatga                                                                                                                            >  2:370413/1‑93 (MQ=255)                                                                                gAACTTCGGCGACAATGGCCAGTGCGTCGGGTACCTGGTCGGCCAGCCGCACCAGGGCCTGGCCTGCATGTTCCAGATGATGAACGAGGCGCGGATAGGCGTAGGCATGGGCGCGGTGATGCTGGGTTACGCCGGCTACCTTTACTCCCt                                                      <  2:514528/150‑1 (MQ=255)                                                                                                 tcgttcatcatctggaacatgcaGGCCAGGCCCTGGTGCGGCTGGCCTGCATGTTCCAGATGATGAACGAGGCGCGGATAGGCGTAGGCATGGGCGCGGTGATGCTGGGTTACGCCGGCTACCTTTACTCCCTGGAATACGCTCGCCAGc                                     <  1:585991‑M1/127‑1 (MQ=255)                                                                                                           tctggaacatgcaggccaggccctggtgcggctggccTGCATGTTCCAGATGATGAACGAGGCGCGGATAGGCGTAGGCATGGGCGCGGTGATGCTGGGTTACGCCGGCTACCTTTACTCCCTGGAAt                                                 <  2:673649‑M2/91‑1 (MQ=255)                                                                                                           tctggaacatgcaggccaggccctggtgcggctggccTGCATGTTCCAGATGATGAACGAGGCGCGGATAGGCGTAGGCATGGGCGCGGTGATGCTGGGTTACGCCGGCTACCTTTACTCCCTGGAAt                                                 >  1:673649‑M2/38‑128 (MQ=255)                                                                                                                          CCAGCCGCACCAGGGCCTGGCCTGCATGTTCCAGATGATGAACGAGGCGCGGATAGGCGTAGGCATGGGCGCGGTGATGCTGGGTTACGCCGGCTACCTTTACTCCCt                                                      >  1:518759‑M1/1‑108 (MQ=255)                                                                                                                          CCAGCCGCACCAGGGCCTGGCCTGCATGTTCCAGATGATGAACGAGGCGCGGATAGGCGTAGGCATGGGCGCGGTGATGCTGGGTTACGCCGGCTACCTTTACTCCCt                                                      <  2:518759‑M1/108‑1 (MQ=255)                                                                                                                          CCAGCCGCACCAGGGCCTGGCCTGCATGTTCCAGATGATGAACGAGGCGCGGATAGGCGTAGGCATGGGCGCGGTGATGCTGGGTTACGCCGGCTACCTTTACTCCCTGGAATACGCTCGCCAGCGGCCGCAGGGCCGACTGCCGGacaa            <  2:421724‑M1/150‑1 (MQ=255)                                                                                                                               cGCACCAGGGCCTGGCCTGCATGTTCCAGATGATGAACGAGGCGCGGATAGGCGTAGGCATGGGCGCGGTGATGCTGGGTTACGCCGGCTACCTTTACTCCCTGGAATACGCTCGCCAGCGGCCGCAGGGCCGACTGCCg                 <  1:651923/140‑1 (MQ=255)                                                                                                                               cGCACCAGGGCCTGGCCTGCATGTTCCAGATGATGAACGAGGCGCGGATAGGCGTAGGCATGGGCGCGGTGATGCTGGGTTACGCCGGCTACCTTTACTCCCTGGAATACGCTCGCCAGCGGCCGCAGGGCCGACTGCCg                 >  2:651923/1‑140 (MQ=255)                                                                                                                                 cACCAGGGCCTGGCCTGCATGTTCCAGATGATGAACGAGGCGCGGATAGGCGTAGGCATGGGGGCGGTGATGCTg                                                                                <  2:339741/75‑1 (MQ=255)                                                                                                                                 cACCAGGGCCTGGCCTGCATGTTCCAGATGATGAACGAGGCGCGGATAGGCGTAGGCATGGGGGCGGTGATGCTg                                                                                >  1:339741/1‑75 (MQ=255)                                                                                                                                    cAGGGCCTGGCCTGCATGTTCCAGATGATGAACGAGGCGCGGATAGGCGTAGGCATGGGCGCGGTGATGCTGGGTTACGCCGGCTACCTTTACTCCCTGGAATACGCTCGCCAGCGGCCGCAGGGCCGACTGCCGGACAACGAGGACCca  <  2:149178/150‑1 (MQ=255)                                                                                                                                        gcctggcctgCATGTTCCAGATGATGAACGAGGCGCGGATAg                                                                                                          <  2:490677/42‑1 (MQ=255)                                                                                                                                        gcctggcctgCATGTTCCAGATGATGAACGAGGCGCGGATAg                                                                                                          >  1:490677/1‑42 (MQ=255)                                                                                                                                        gcctggcctgCATGTTCCAGATGATGAACGAGGCGCGGATAGGCGTAGGCATGGGCGCGGTGATGCTgg                                                                               <  2:155817/69‑1 (MQ=255)                                                                                                                                        gcctggcctgCATGTTCCAGATGATGAACGAGGCGCGGATAGGCGTAGGCATGGGCGCGGTGATGCTgg                                                                               >  1:155817/1‑69 (MQ=255)                                                                                                                                                |                                                                                                                                          GCCGTGGCCCGCGCAACGATGTGCTGCTGGCCGGGCTGTTCCACAAGATGGGCTGGCGTGGCACCACCTCGACCGCGCTGAACTTCGGCGACAATGGCCAGTGCGTCGGGTACCTGGTCGGCCAGCCGCACCAGGGCCTGGCCTGCATGTTCCAGATGATGAACGAGGCGCGGATAGGCGTAGGCATGGGCGCGGTGATGCTGGGTTACGCCGGCTACCTTTACTCCCTGGAATACGCTCGCCAGCGGCCGCAGGGCCGACTGCCGGACAACAAGGACCCA  >  NC_002947/5636405‑5636685

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.