New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4927328 =	26 (0.920)	4 (0.150)	4/238	NT	14.8%	coding (599/1113 nt)	cheBA	chemotaxis response regulator protein‑glutamate methylesterase
	?	NC_002947	4927360 =	21 (0.770)					coding (567/1113 nt)	cheBA	chemotaxis response regulator protein‑glutamate methylesterase

GCACAGCTTGTCCAGGCGTTCGGCAAACGCTTTGGTGAAGGCCGCCGGCATGTGCTGGATCAACACGATCGGCGCCGGGAAATTGGCCGGCAGCTGCGTCAGTACCCGCTGCAGCGCCACCGGCCCCCCCGTGGAGGTACCGATGGCCACCAGTTTGTAGGGTTTGCGCTTGGGTGCCGGCGACTGCGAGGCCGCCGGCGTCGGGGCCGCTGCACGGGCAGGCGCTGCCGGGCGCGTCTGCGCCTGGCTGGTAAAGGTGCTGGCCGGCGCTGGCGCGGCGACC  >  NC_002947/4927213‑4927495                                                                                                                                                    |                                                                                                                                        gCACAGCTTGTCCAGGCGTTCGGCAAACGCTTTGGTGAAGGCCGCCGGCATGTGCTGGATCAACACGATCGGCGCCGGGAAATTTGCCGGCAGCTGCGTCAGTACCCGCTGCAGCGCCACCGGCCCCCCCGTGGAGGTACCGATGGccac                                                                                                                                       >  2:289402/1‑150 (MQ=255)             cAGGCGTTCGGCAAACGCTTTGGTGAAGGCCGCCGGCATGTGCTGGATCAACACGATCGGCGCCGGGAAATTGGCCGGCAGCTGCGTCAGTACCCGCTGCAGCGCCACCGGCCCCCCCGTGGAGGTACCGATGGCCACCAGTTTGTAg                                                                                                                             <  2:627551/148‑1 (MQ=255)             cAGGCGTTCGGCAAACGCTTTGGTGAAGGCCGCCGGCATGTGCTGGATCAACACGATCGGCGCCGGGAAATTGGCCGGCAGCTGCGTCAGTACCCGCTGCAGCGCCACCGGCCCCCCCGTGGAGGTACCGATGGCCACCAGTTTGTAg                                                                                                                             >  1:627551/1‑148 (MQ=255)             cAGGCGTTCGGCAAACGCTTTGGTGAAGGCCGCCGGCATGTGCTGGATCAACACGATCGGCGCCGGGAAATTGCACGGCAGCTGCGTCAGTACCCGCTGCAGCGCCACCGGCCCCCCCGTGGAGGTACCGATGGCCACCAGTTTGTAggg                                                                                                                           >  2:60573/1‑150 (MQ=255)                        cAAACGGTTTGGTGAAGGCCGCCGGCATGTGCTGGATCACAACGATCCCCGCCGGGAAATTTGCCGGCAGCCGTTTTGCGTCCCGCTGCAGCGCCACCGGCCCCCCCGTGGAGGTACCGATGGCCACCAGTTTGTAGGGTTTGCGCTTgg                                                                                                                <  1:355750/150‑1 (MQ=255)                        cAAACGCTTTGGTGAAGGCCGCCGGCATGTGCTGGATCAACACGATCGGCGCCGGGAAATTGGCCGGCAGCTGCGTCAGTACCCGCTGCAGCGCCACCGGCCCCCCCGTGGAGGTACCGATGGCCACCAGTTTGTAGGGTTTGCGCTTgg                                                                                                                >  2:202950/1‑150 (MQ=255)                                ccggcagcgcctgcccgtgcagcggccccgacgccggcggcctcgcagtcgccggcacccaagcgcaaaccctacaaactggtgGCCACCGGCCCCCCCGTGGAGGTACCGATGGccacca                                                                                                                                     >  2:440311‑M1/85‑121 (MQ=255)                                ccggcagcgcctgcccgtgcagcggccccgacgccggcggcctcgcagtcgccggcacccaagcgcaaaccctacaaactggtgGCCACCGGCCCCCCCGTGGAGGTACCGATGGccacca                                                                                                                                     <  1:440311‑M1/37‑1 (MQ=255)                                        gcctgcccgtgcagcggccccgacgccggcggcctcgcagtcgccggcacccaagcgcaaaccctacaaactggtgGCCACCGGCCCCCCCGTGGAGGTACCGATGGcc                                                                                                                                         >  2:141007‑M1/77‑109 (MQ=255)                                        gcctgcccgtgcagcggccccgacgccggcggcctcgcagtcgccggcacccaagcgcaaaccctacaaactggtgGCCACCGGCCCCCCCGTGGAGGTACCGATGGcc                                                                                                                                         <  1:141007‑M1/33‑1 (MQ=255)                                                     tgCTGGATCAACACGATCGGCGCCGGGAAATTGGCCGGCAGCTGCGTCAGTACCCGCTGCAGCGCCACCGGCCCCCCCGTGGAGGTACCGATGGCCACCAGTTTGTa                                                                                                                              <  1:617765/107‑1 (MQ=255)                                                     tgCTGGATCAACACGATCGGCGCCGGGAAATTGGCCGGCAGCTGCGTCAGTACCCGCTGCAGCGCCACCGGCCCCCCCGTGGAGGTACCGATGGCCACCAGTTTGTa                                                                                                                              >  2:617765/1‑107 (MQ=255)                                                          gATCAACACGATCGGCGCCGGGAAATTGGCCGGCAGCTGCGTCAGTACCCGCTGCAGCGCCACCGGCCCCCCCGTGGAGGTACCGATGGCCACCAGTTTGTAGGGTTTGCGCTTGGGTGCCGGCGACTGCGAGGCCGCCGGCGTCg                                                                                  >  2:178331/1‑146 (MQ=255)                                                          gATCAACACGATCGGCGCCGGGAAATTGGCCGGCAGCTGCGTCAGTACCCGCTGCAGCGCCACCGGCCCCCCCGTGGAGGTACCGATGGCCACCAGTTTGTAGGGTTTGCGCTTGGGTGCCGGCGACTGCGAGGCCGCCGGCGTCg                                                                                  <  1:178331/146‑1 (MQ=255)                                                             cAACACGATCGGCGCCGGGAAATTGGCCGGCAGCTGCGTCAGTACCCGCTGCAGCGCCACCGGCCCCCCCGTGGAGGTACCGATGGCCACCAGTTTGTAGGGTTTGCGCTTGGGTGCCGGCGACTGCGAGGCCGCCGGCGTCGGGGCCGc                                                                           <  1:427321/150‑1 (MQ=255)                                                              aaCACGATCGGCGCCGGGAAATTGGCCGGCAGCTGCGTCAGTACCCGCTGCAGCGCCACCGGCCCCCCCGTGGAGGTACCGATGGCCACCAGTTTGTAGGGTTTGCGCTTGGGTGCCGGCGACTGCGAGGCCGCCGGCGTCGGGGCCGCt                                                                          >  2:217448/1‑150 (MQ=255)                                                                 acGATCGGCGCCGGGAAATTGGCCGGCAGCTGCGTCAGTACCCGCTGCAGCGCCACCGGCCCCCCCGTGGAGGTACCGATGGCCACCAGTTTGTAGGGTTTGCGCTTGGGTGCCGGCGACTGCGAGGCCGCCGGCGTCGGGGCCGCTGCa                                                                       >  2:582634/1‑150 (MQ=255)                                                                  cGATCGGCGCCGGGAAATTGGCCGGCAGCTGCGTCAGTACCCGCTGCAGCGCCACCGGCCCCCCCGTGGAGGTACCGATGGCCACCAGTTTGTAGGGTTTGCGCTTGGGTGCCGGCGACTGCGAGGCCGCCGGCGTCGGGGCCGCTGCAc                                                                      <  2:331344/150‑1 (MQ=255)                                                                          gcCGGGAAATTGGCCGGCAGCTGCGTCAGTACCCGCTGCAGCGCCACCGGCCCCCCCGTGGAGGTATCGATGGCCACCAGTTTGTAGGGTTTGCGCTTGGGTGCCGGCGACTGCGAGGCCGCCGGCGTCGGGGCCGCTGCACGGGCAGgc                                                              <  1:202950/150‑1 (MQ=255)                                                                                aaaTTGGCCGGCAGCTGCGTCAGTACCCGCTGCAGCGCCACCGGCCCCCCCGTGGAGGTACCGATGGCCACCAGTTTGTAGGGTTTGCGCTTGGGTGCCGGCGACTGCGAGGCCGCCGGCGTCGGGGCCGCTGCACGGGCAGGCGCTGcc                                                        >  2:490112/1‑150 (MQ=255)                                                                                                          ccGCTGCAGCGCCACCGGCCCCCCCGTGGAGGTACCGATGGCCACCAGTTTGTAGGGTTTGCGCTTGGGTGCCGGCGACTGCGAGGCCGCCGGCGTCGGGGCCGCTGCACGGGCAGGCGCTGCCGGGCGCGTCTGCGCCTGGCTGGTaaa                              >  1:107110/1‑150 (MQ=255)                                                                                                           cGCTGCAGCGCCACCGGCCCCCCCGTGGAGGTACCGATGGCCACCAGTTTGTAGGGTTTGCGCTTGGGTGCCGGCGACTGCGAGGCCGCCGGCGTCGGGGCCGCTGCACGGGCAGGCGCTGCCGGGCGCGTCTGCGCCTGGCTGGTAAAg                             <  1:289402/150‑1 (MQ=255)                                                                                                               tggtggccatcggtacctccacgggggggccggtggcCACCAGTTTGTAGGGTTTGCGCTTGGGTGCCGGCGACTGCGAGGCCGCCGGCGTCGGGGCCGCTGCACGGGCAGGCGCTGCCgg                                                      >  2:440311‑M2/38‑121 (MQ=255)                                                                                                               tggtggccatcggtacctccacgggggggccggtggcCACCAGTTTGTAGGGTTTGCGCTTGGGTGCCGGCGACTGCGAGGCCGCCGGCGTCGGGGCCGCTGCACGGGCAGGCGCTGCCgg                                                      <  1:440311‑M2/84‑1 (MQ=255)                                                                                                                   ggccatcggtacctccacgggggggccggtggcCACCAGTTTGTAGGGTTTGCGCTTGGGTGCCGGCGACTGCGAGGCCGCCGGCGTCGGGGCCGCTGCACGGGCAGgc                                                              <  1:141007‑M2/76‑1 (MQ=255)                                                                                                                   ggccatcggtacctccacgggggggccggtggcCACCAGTTTGTAGGGTTTGCGCTTGGGTGCCGGCGACTGCGAGGCCGCCGGCGTCGGGGCCGCTGCACGGGCAGgc                                                              >  2:141007‑M2/34‑109 (MQ=255)                                                                                                                       ACCGGCCCCCCCGTGGAGGTACCGATGGCCACCAGTTTGTAGGGTTTGCGCTTGGGTGCCGGCGACTGCGAGGCCGCCGGCGTCGGGGCCGCTGCACGGGCAGGCGCTGCCGGGCGCGTCTGCGCCTGGCTGGTAAAGGTGCTGGCCGGc                 <  2:392108‑M1/150‑1 (MQ=255)                                                                                                                               ccccGTGGAGGTACCGATGGCCACCAGTTTGTAGGGTTTGCGCTTGGGTGCCGGCGACTGCGAGGCCGCCGGCGTCGGGGCCGCTGCACGGGCAGGCGCTGCCGGGCGCGTCTGCGCCTGGCTGGTAAAGGTGCTGGCCGGCGCTGgcgc         >  2:683486/1‑150 (MQ=255)                                                                                                                                cccGTGGAGGTACCGATGGCCACCAGTTTGTAGGGTTTGCGCTTGGGTGCCGGCGACTGCGAGGCCGCCGGCTGCGGGGCCGCTGCACGGGCAGGCGCTGCCGGGCGCGTCTGCGCCTGGCTGGTAAAGGTGCTGGCCGGCGCTGGcgcg        >  1:242219/1‑150 (MQ=255)                                                                                                                                     ggAGGTACCGATGGCCACCAGTTTGTAGGGTTTGCGCTTGGGTGCCGGCGACTGCGAGGCCGCCGGCGTCGGGGCCGCTGCACGGGCAGGCGCTGCCGGGCGCGTCTGCGCCTGGCTGGTAAAGGTGCTGGCCGGCGCTGGCGCGGCGAc   <  2:242219/150‑1 (MQ=255)                                                                                                                                      gAGGTACCGATGGCCACCAGTTTGTAGGGTTTGCGCTTGGGTGCCGGCGACTGCGAGGCCGCCGGCGTCGGGGCCGCTGCACGGGCAGGCGCTGCCGGGCGCGTCTGCGCCTGGCTGGTAAAGGTGCTGGCCGGCGCTGGCGCGGCGAcc  >  1:127838/1‑150 (MQ=255)                                                                                                                                                    caccaGTTTGTAGGGTTTGCGCTTGGGTGCCGGCGACTGCGAGGCCGCCGGCGTCGGGGCCGCTGCACGGGCAGGCGCTGCCGGGCGCGTCTGCGCctggctgg                                  >  1:8933/1‑104 (MQ=255)                                                                                                                                                    caccaGTTTGTAGGGTTTGCGCTTGGGTGCCGGCGACTGCGAGGCCGCCGGCGTCGGGGCCGCTGCACGGGCAGGCGCTGCCGGGCGCGTCTGCGCctggctgg                                  <  2:8933/104‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                        GCACAGCTTGTCCAGGCGTTCGGCAAACGCTTTGGTGAAGGCCGCCGGCATGTGCTGGATCAACACGATCGGCGCCGGGAAATTGGCCGGCAGCTGCGTCAGTACCCGCTGCAGCGCCACCGGCCCCCCCGTGGAGGTACCGATGGCCACCAGTTTGTAGGGTTTGCGCTTGGGTGCCGGCGACTGCGAGGCCGCCGGCGTCGGGGCCGCTGCACGGGCAGGCGCTGCCGGGCGCGTCTGCGCCTGGCTGGTAAAGGTGCTGGCCGGCGCTGGCGCGGCGACC  >  NC_002947/4927213‑4927495

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.