| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 249070 | 24 (0.830) | 8 (0.290) | 7/254 | 2.4 | 25.8% | intergenic (+18/+31) | PP_0198/qmcA | putative transporter/membrane protease family protein |
| ? | NC_002947 | = 249090 | 23 (0.830) | intergenic (+38/+11) | PP_0198/qmcA | putative transporter/membrane protease family protein | |||||
GCGTTTGAACCGCACCTTTGCCGGGTTGTTCATTGGTGCAGCCACCTTCCTCGCGACCTTGCGCCGCGCGCCGGTCTGACAGACCGCATACAGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/248974‑249070‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccaATCGCGGGTTTGCCCGCGAATGGCCTGTATGCGGTCTGTCAGACCGGCGCGCGGCGCAAGGTCGCGAGGAAGGTGGCTGCACCAATGAACAACCCGGCAAAGGTGCGGTTCAAACGCTTCTGCTGTTTGGGCGTGCGCAGCATGCGCA < NC_002947/249090‑248943 GCGTTTGAACCGCACCTTTGCCGGGTTGTTCATTGGTGCAGCCACCTTCCTCGCGACCTTGCGCCGCGCGCCGGTCTGACAGACCGCATACAGGCCAATCGCGGGTTTGCCCGCGAAT < 1:685513/118‑1GCGTTTGAACCGCACCTTTGCCGGGTTGTTCATTGGTGCAGCCACCTTCCTCGCGACCTTGCGCCGCGCGCCGGTCTGACAGACCGCATACAGGCCAATCGCGGGTTTGCCCGCGAAT > 2:685513/1‑118 GAACCGCACCTTTGCCGGGTTGTTCATTGGTGCAGCCACCTTCCTCGCGACCTTGCGCCGCGCGCCGGTCTGACAGACCGCATACAGGCCAATCGCGGGTTTGCCCGCGAAT > 1:170074/1‑112 GAACCGCACCTTTGCCGGGTTGTTCATTGGTGCAGCCACCTTCCTCGCGACCTTGCGCCGCGCGCCGGTCTGACAGACCGCATACAGGCCAATCGCGGGTTTGCCCGCGAAT < 2:170074/112‑1 TCGCGACCTTGCGCCGCGCGCCGGTCTGACAGACCGCATACAGGCCAATCGCGGGTTTGCCCGCGAATGGCCTGTATGCG < 1:369017/80‑1 TCGCGACCTTGCGCCGCGCGCCGGTCTGACAGACCGCATACAGGCCAATCGCGGGTTTGCCCGCGAATGGCCTGTATGCG > 2:369017/1‑80 ACCGCATACAGGCCATTCGCGGGCAAACCCGCGATTGGCCTGTATGCGGTCTGTCAGACCGGCGCGCGGCGCAAGGTCGCGAGGAAGGTGGCTGCACCAATGAACAACCCGGCAAAG > 1:543964/1‑117 ACCGCATACAGGCCATTCGCGGGCAAACCCGCGATTGGCCTGTATGCGGTCTGTCAGACCGGCGCGCGGCGCAAGGTCGCGAGGAAGGTGGCTGCACCAATGAACAACCCGGCAAAG < 2:543964/117‑1 GGCCAATCGCGGGTTTGCCCGCGAATGGCCTGTATGCGGTCTGTCAGACCGGCGCGCGGCGCAAGGTCGCGAGGAAGGTGGCTGCACCAATGAACAACCCGGCAAAGG > 1:461011/1‑108 GGCCAATCGCGGGTTTGCCCGCGAATGGCCTGTATGCGGTCTGTCAGACCGGCGCGCGGCGCAAGGTCGCGAGGAAGGTGGCTGCACCAATGAACAACCCGGCAAAGG < 2:461011/108‑1 CAATCGCGGGTTTGCCCGCGAATGGCCTGTATGCGGTCTGTCAGACCGGCGCGCGGCGCAAGGTCGCGAGGAAGGTGGCTGCACCAATGAACAACCCGGCAAAGGTGCGGTTCAAACGCTTCTGCTGTTTGGGCGTGCGCAGCATGCGCA > 1:545247/1‑150 AATCGCGGGTTTGCCCGCGAATGGCCTGTATGCGGTCTGTCAGACCGGCGCGCGGCGCAAGGTCGCGAGGAAGGTGGCTGCACCAATGAACAACCCGGCAAAGGTGC > 1:326814/1‑107 AATCGCGGGTTTGCCCGCGAATGGCCTGTATGCGGTCTGTCAGACCGGCGCGCGGCGCAAGGTCGCGAGGAAGGTGGCTGCACCAATGAACAACCCGGCAAAGGTGC < 2:326814/107‑1 GCGTTTGAACCGCACCTTTGCCGGGTTGTTCATTGGTGCAGCCACCTTCCTCGCGACCTTGCGCCGCGCGCCGGTCTGACAGACCGCATACAGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/248974‑249070‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccaATCGCGGGTTTGCCCGCGAATGGCCTGTATGCGGTCTGTCAGACCGGCGCGCGGCGCAAGGTCGCGAGGAAGGTGGCTGCACCAATGAACAACCCGGCAAAGGTGCGGTTCAAACGCTTCTGCTGTTTGGGCGTGCGCAGCATGCGCA < NC_002947/249090‑248943 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |