| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 249070 | 24 (0.830) | 8 (0.290) | 7/254 | 2.4 | 25.8% | intergenic (+18/+31) | PP_0198/qmcA | putative transporter/membrane protease family protein |
| ? | NC_002947 | = 249090 | 23 (0.830) | intergenic (+38/+11) | PP_0198/qmcA | putative transporter/membrane protease family protein | |||||
TGCGCATGCTGCGCACGCCCAAACAGCAGAAGCGTTTGAACCGCACCTTTGCCGGGTTGTTCATTGGTGCAGCCACCTTCCTCGCGACCTTGCGCCGCGCGCCGGTCTGACAGACCGCATACAGGCCATTCGCGGGCAAACCCGCGATTGGCCCATCACTATTTCTCCTTGTCCACCAACCCCTTCAGCAGATCTATCGGCAGCGGGAAGACGATGGTCGAGCTCTTGTCCCCGGCAATCGTCCCCAGTGTCTGCATATAGCGCAACTGCATCGCCCCCGGTTCCTTGCTCAGCAT > NC_002947/248943‑249238 | tGCGCATGCTGCGCACGCCCAAACAGCAGAAGCGTTTGAACCGCACCTTTGCCGGGTTGTTCATTGGTGCAGCCACCTTCCTCGCGACCTTGCGCCGCGCGCCGGTCTGACAGACCGCATACAGGCCATTCGCGGGCAAACCCGCGATtg > 1:545247‑M2/1‑148 (MQ=255) tgctgcGCACGCCCAAACAGCAGAAGCGTTTGAACCGCACCTTTGCCGGGTTGTTCATTGGTGCAGCCACCTTCCTCGCGACCTTGCGCCGCGCGCCGGTCTGACAGACCGCATACAGGCCATTCGCGGGCAAACCCGCGATTGGCCCAt > 2:478850/1‑150 (MQ=255) gtgtgcACGCCCAAACAGCAGAGGCGTTTGAACAGAACCTTTGCCGGGTTGTTCATTGGTGCAGCAACCTTCCTCGCGACCTTGCGCCGCGCGCCGGTCTGACAGACCGCATACAGGCCATTCGCGGGCAAACCCGCGATTGGCCCATCa < 2:514752/146‑1 (MQ=255) aCGCCCAAACAGCAGAAGCGTTTGAACCGCACCTTTGCCGGGTTGTTCATTGGTGCAGCCACCTTCCTCGCGACCTTGCGCCGCGCGCCGGTCTGACAGACCGCATACAGGCCATTCGCGGGCAAACCCGCGATTGGCCCATCACTAttt < 1:428719/150‑1 (MQ=255) aCGCCCAAACAGCAGAAGCGTTTGAACCGCACCTTTGCCGGGTTGTGCATTGGTGCAGCCACCTTCCTCGCGACCTTGCGCCGCGCGCCGGTCTGACAGACCGCATACAGGCCATTCGCGGGCAAACCCGCGATTGGCCCATCACTAttt > 2:465867/1‑150 (MQ=255) cAAACAGCAGAAGCGTTTGAACCGCACCTTTGCCGGGTTGTTCATTGGTGCAGCCACCTTCCTCGCGACCTTGCGCCGCGCGCCGGTCTGACAGACCGCATACAGGCCATTCGCGGGCAAATCCGCGATTGGCCCATCACTATTTCTCCt < 1:496348/150‑1 (MQ=255) gAACCGCACCTTTGCCGGGTTGTTCATTGGTGCAGCCACCTTCCTCGCGACCTTGCGCCGCGCGCCGGTCTGACAGACCGCATACAGGCCATTCGCGGGCAAACCCGCGATTGGCCCATCACTATTTCTCCTTGTCCACCAACCCCTTca < 1:657055/150‑1 (MQ=255) gAACCGCACCTTTGCCGGGTTGTTCATTGGTGCAGCCACCTTCCTCGCGACCTTGCGCCGCGCGCCGGTCTGACAGACCGCATACAGGCCATTCGCGGGCAAACCCGCGATTGGCCCATCACTATTTCTCCTTGTCCACCAACCCCTTca > 2:635301/1‑150 (MQ=255) aaCCGCACCTTTGCCGGGTTGTTCATTGGTGCAGCCACCTTCCTCGCGACCTTGCGCCGCGCGCCGGTCTGACAGACCGCATACAGGCCATTCGCGGGCAAACCCGCGATTGGCCCATCACTATTTCTCCTTGTCCACCAACCCCTTcag < 1:478850/150‑1 (MQ=255) gCACCTTTGCCGGGTTGTTCATTGGTGCAGCCACCTTCCTCGCGACCTTGCGCCGCGCGCCGGTCTGACAGACCGCATACAGGCCATTCGCGGGCAAACCCGCGATt < 2:326814‑M2/107‑2 (MQ=255) gCACCTTTGCCGGGTTGTTCATTGGTGCAGCCACCTTCCTCGCGACCTTGCGCCGCGCGCCGGTCTGACAGACCGCATACAGGCCATTCGCGGGCAAACCCGCGATt > 1:326814‑M2/1‑106 (MQ=255) cACCTTTGCCGGGTTGTTCATTGGTGCAGCCACCTTCCTCGCGACCTTGCGCCGCGCGCCGGTCTGACAGACCGCATACAGGCCATTCGCGGGCAAACCCGCGATTGGCCCATCACTa > 2:158428/1‑118 (MQ=255) cACCTTTGCCGGGTTGTTCATTGGTGCAGCCACCTTCCTCGCGACCTTGCGCCGCGCGCCGGTCTGACAGACCGCATACAGGCCATTCGCGGGCAAACCCGCGATTGGCCCATCACTa < 1:158428/118‑1 (MQ=255) ccTTTGCCGGGTTGTTCATTGGTGCAGCCACCTTCCTCGCGACCTTGCGCCGCGCGCCGGTCTGACAGACCGCATACAGGCCATTCGCGGGCAAACCCGCGATtggcc > 1:461011‑M2/1‑103 (MQ=255) ccTTTGCCGGGTTGTTCATTGGTGCAGCCACCTTCCTCGCGACCTTGCGCCGCGCGCCGGTCTGACAGACCGCATACAGGCCATTCGCGGGCAAACCCGCGATtggcc < 2:461011‑M2/108‑6 (MQ=255) cTTTGCCGGGTTGTTCATTGGTGCAGCCACCTTCCTCGCGACCTTGCGCCGCGCGCCGGTCTGACAGACCGCATACAGGCCAATCGCGGGTTTGCCCGCGAAtggcctgtatgcggt > 1:543964‑M2/1‑102 (MQ=255) cTTTGCCGGGTTGTTCATTGGTGCAGCCACCTTCCTCGCGACCTTGCGCCGCGCGCCGGTCTGACAGACCGCATACAGGCCAATCGCGGGTTTGCCCGCGAAtggcctgtatgcggt < 2:543964‑M2/117‑16 (MQ=255) cATTGGTGCAGCCACCTTCCTCGCGACCTTGCGCCGCGCGCCGGTCTCACAGACCGCATACGGGCCATTCGCGGGCAAACCCGCGATTGGCCCATCACTATTTCTCCTTGTCCACCAACCCCTTCAGCAGATCTATCGGCAGCGGGAAGa < 1:122049/150‑1 (MQ=255) aGCCACCTTCCTCGCGACCTTGCGCCGCGCGCCGGTCTGACAGACCGCATACAGGCCATTCGCGGGCAAACCCGCGATTGGCCCATCACTATTTCTCCTTGTCCACCAACCCCTTCAGCAGa < 1:491768/122‑1 (MQ=255) aGCCACCTTCCTCGCGACCTTGCGCCGCGCGCCGGTCTGACAGACCGCATACAGGCCATTCGCGGGCAAACCCGCGATTGGCCCATCACTATTTCTCCTTGTCCACCAACCCCTTCAGCAGa > 2:491768/1‑122 (MQ=255) cTTCCTCGCGACCTTGCGCCGCGCGCCGGTCTGACAGACCGCATACAGGCCATTCGCGGGCAAACCCGCGATTGGCCCATCACTATTTCTcc > 2:668502/1‑92 (MQ=255) cTTCCTCGCGACCTTGCGCCGCGCGCCGGTCTGACAGACCGCATACAGGCCATTCGCGGGCAAACCCGCGATTGGCCCATCACTATTTCTcc < 1:668502/92‑1 (MQ=255) cTTGCGCCGGGCGCCGGTCTGACAGACCGCATACAGGCCATTCGCGGGCAAACCCGCGATTGGCCCATCACTATTTCTCCTTGTCCACCAACCCCTTCAGCAGATCTATCGGCAGCGGGAAGACGATGGTCGAGCTCTTGTCCCCGGCaa < 1:101494/150‑1 (MQ=255) ccgcGCGCCGGTCTGACAGACCGCATACAGGCCATTCGCGGGCAAACCCGCGATTGGCCCATCACTATTTCTCCTTGTCCACCAACCCCTTCAGCAGATCTATCGGCAGCGGGAAGACGATGGTCGAGCTCTTGTCCCCGGCAATCGTcc < 1:635301/150‑1 (MQ=255) aGACCGCATACAGGCCATTCGCGGGCAAACCCGCGATTGGCCCATCACTATTTCTCCTTGTCCACCAACCCCTTCAGCAGATCTATCGGCAGCGGGAAGACGATGGTCGAGCTCTTGTCCCCGGCAATCGTCCCCAGTGTCTGCATATAg > 1:249766/1‑150 (MQ=255) cGCATACAGGCCATTCGCGGGCAAACCCGCGATtggcctgtatgcggtctgtcagaccggcgcgcggcgcaaggtcgcga > 2:369017‑M2/1‑33 (MQ=255) cGCATACAGGCCATTCGCGGGCAAACCCGCGATtggcctgtatgcggtctgtcagaccggcgcgcggcgcaaggtcgcga < 1:369017‑M2/80‑48 (MQ=255) cAGGCCATTCGCGGGCAAACCCGCGATTGGCCCATCACTATTTCTCCTTGTCCACCAACCCCTTCAGCAGATCTATCGGCAGCGGGAAGACGATGGTCGAGCTCTTGTCCCCGGCAATCGTCCCCAGTGTCTGCATATAgc < 2:498764/141‑1 (MQ=255) cAGGCCATTCGCGGGCAAACCCGCGATTGGCCCATCACTATTTCTCCTTGTCCACCAACCCCTTCAGCAGATCTATCGGCAGCGGGAAGACGATGGTCGAGCTCTTGTCCCCGGCAATCGTCCCCAGTGTCTGCATATAgc > 1:498764/1‑141 (MQ=255) aGGCCATTCGCGGGCAAACCCGCGATTGGCCCATCACTATTTCTCCTTGTCCACCAACCCCTTCAGCAGATCTATCGGCAGCGGGAAGACGATGGTCGAGCTCTTGTCCCCGGCAATCGTCCCCAGTGTCTGCATATAGCGCAACTGCAt > 2:452094/1‑150 (MQ=255) aTTCGCGGGCAAACCCGCGATtggcctgtatgcggtctgtcagaccggcgcgcggcgcaaggtcgcgaggaaggtggctgcaccaatgaacaacccggcaaaggtgcggttcaaacgc < 1:685513‑M2/118‑98 (MQ=255) aTTCGCGGGCAAACCCGCGATtggcctgtatgcggtctgtcagaccggcgcgcggcgcaaggtcgcgaggaaggtggctgcaccaatgaacaacccggcaaaggtgcggttcaaacgc > 2:685513‑M2/1‑21 (MQ=255) aTTCGCGGGCAAACCCGCGATtggcctgtatgcggtctgtcagaccggcgcgcggcgcaaggtcgcgaggaaggtggctgcaccaatgaacaacccggcaaaggtgcggttc < 2:170074‑M2/112‑92 (MQ=255) aTTCGCGGGCAAACCCGCGATtggcctgtatgcggtctgtcagaccggcgcgcggcgcaaggtcgcgaggaaggtggctgcaccaatgaacaacccggcaaaggtgcggttc > 1:170074‑M2/1‑21 (MQ=255) aCCCGCGATTGGCCCATCACTATTTCTCCTTGTCCACCAACCCCTTCAGCAGATCTATCGGCAGCGGGAAGACGATGGTCGAGCTCTTGTCCCCGGCAATCGTCCCCAGTGTCTGCATATAGCGCAACTGCATCGCCCCCGGTTCCTTGc > 1:69520/1‑150 (MQ=255) aTTGGCCCATCACTATTTCTCCTTGTCCACCAACCCCTTCAGCAGATCTATCGGCAGCGGGAAGACGATGGTCGAGCTCTTGTCCCCGGCAATCGTCCCCAGTGTCTGCATATAGCGCAACTGCATCGCCCCCGGTTCCTTGCTCAGCAt < 1:577539/150‑1 (MQ=255) | TGCGCATGCTGCGCACGCCCAAACAGCAGAAGCGTTTGAACCGCACCTTTGCCGGGTTGTTCATTGGTGCAGCCACCTTCCTCGCGACCTTGCGCCGCGCGCCGGTCTGACAGACCGCATACAGGCCATTCGCGGGCAAACCCGCGATTGGCCCATCACTATTTCTCCTTGTCCACCAACCCCTTCAGCAGATCTATCGGCAGCGGGAAGACGATGGTCGAGCTCTTGTCCCCGGCAATCGTCCCCAGTGTCTGCATATAGCGCAACTGCATCGCCCCCGGTTCCTTGCTCAGCAT > NC_002947/248943‑249238 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |