New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 249070	24 (0.830)	8 (0.290)	7/254	2.4	25.8%	intergenic (+18/+31)	PP_0198/qmcA	putative transporter/membrane protease family protein
	?	NC_002947	= 249090	23 (0.830)					intergenic (+38/+11)	PP_0198/qmcA	putative transporter/membrane protease family protein

TTCGCATGTGTTGCGCATGCTGCGCACGCCCAAACAGCAGAAGCGTTTGAACCGCACCTTTGCCGGGTTGTTCATTGGTGCAGCCACCTTCCTCGCGACCTTGCGCCGCGCGCCGGTCTGACAGACCGCATACAGGCCATTCGCGGGCAAACCCGCGATTGGCCCATCACTATTTCTCCTTGTCCACCAACCCCTTCAGCAGATCTATCGGCAGCGGGAAGACGATGGTCGAGCTCTTGTCCCCGGCAATCGTCCCCAGTGTCTGCATATAGCGCAACTGCATCGCC  >  NC_002947/248932‑249218                                                                                                                                           |                                                                                                                                                     ttCGCATGTGTTGCGCATGCTGCGCACGCCCAAACAGCAGAAGCGTTTGAACCGCACCTTTGCCGGGTTGTTCATTGGTGCAGCCACCTTCCTCGCGACCTTGCGCCGCGCGCCGGTCTGACAGACCGCATACAGGCCATTCGCGGGCaa                                                                                                                                           >  2:577539/1‑150 (MQ=255)   cGCATGTGTTGCGCATGCTGCGCACGCCCAAACAGCAGAAGCGTTTGAACCGCACCTTTGCCGGGTTGTTCATTGGTGCAGCCACCTTCCTCGCGACCTTGCGCCGCGCGCCGGTCTGACAGACCGCATACAGGCTATTCGCGGGCAAAc                                                                                                                                         <  1:249678/150‑1 (MQ=255)    gCATGTGTTGCGCATGCTGCGCACGCCCAAACAGCAGAAGCGTTTGAACCGCACCTTTGCCGGGTTGTTCATTGGTGCAGCCACCTTCCTCGCGACCTTGCGCCGCGCGCCGGTCTGACAGACCGCATACAGGCCATTCGCGGGCAAAcc                                                                                                                                        >  2:325225/1‑150 (MQ=255)            tGCGCATGCTGCGCACGCCCAAACAGCAGAAGCGTTTGAACCGCACCTTTGCCGGGTTGTTCATTGGTGCAGCCACCTTCCTCGCGACCTTGCGCCGCGCGCCGGTCTGACAGACCGCATACAGGCCATTCGCGGGCAAACCCGCGATtg                                                                                                                                >  1:545247‑M2/1‑148 (MQ=255)                  tgctgcGCACGCCCAAACAGCAGAAGCGTTTGAACCGCACCTTTGCCGGGTTGTTCATTGGTGCAGCCACCTTCCTCGCGACCTTGCGCCGCGCGCCGGTCTGACAGACCGCATACAGGCCATTCGCGGGCAAACCCGCGATTGGCCCAt                                                                                                                          >  2:478850/1‑150 (MQ=255)                    gtgtgcACGCCCAAACAGCAGAGGCGTTTGAACAGAACCTTTGCCGGGTTGTTCATTGGTGCAGCAACCTTCCTCGCGACCTTGCGCCGCGCGCCGGTCTGACAGACCGCATACAGGCCATTCGCGGGCAAACCCGCGATTGGCCCATCa                                                                                                                        <  2:514752/146‑1 (MQ=255)                          aCGCCCAAACAGCAGAAGCGTTTGAACCGCACCTTTGCCGGGTTGTTCATTGGTGCAGCCACCTTCCTCGCGACCTTGCGCCGCGCGCCGGTCTGACAGACCGCATACAGGCCATTCGCGGGCAAACCCGCGATTGGCCCATCACTAttt                                                                                                                  <  1:428719/150‑1 (MQ=255)                          aCGCCCAAACAGCAGAAGCGTTTGAACCGCACCTTTGCCGGGTTGTGCATTGGTGCAGCCACCTTCCTCGCGACCTTGCGCCGCGCGCCGGTCTGACAGACCGCATACAGGCCATTCGCGGGCAAACCCGCGATTGGCCCATCACTAttt                                                                                                                  >  2:465867/1‑150 (MQ=255)                               cAAACAGCAGAAGCGTTTGAACCGCACCTTTGCCGGGTTGTTCATTGGTGCAGCCACCTTCCTCGCGACCTTGCGCCGCGCGCCGGTCTGACAGACCGCATACAGGCCATTCGCGGGCAAATCCGCGATTGGCCCATCACTATTTCTCCt                                                                                                             <  1:496348/150‑1 (MQ=255)                                           gCGTTTGAACCGCACCTTTGCCGGGTTGTTCATTGGTGCAGCCACCTTCCTCGCGACCTTGCGCCGCGCGCCGGTCTGACAGACCGCATACAGGCCAatcgcgggtttgcccgcgaat                                                                                                                                 <  1:685513‑M1/118‑22 (MQ=255)                                           gCGTTTGAACCGCACCTTTGCCGGGTTGTTCATTGGTGCAGCCACCTTCCTCGCGACCTTGCGCCGCGCGCCGGTCTGACAGACCGCATACAGGCCAatcgcgggtttgcccgcgaat                                                                                                                                 >  2:685513‑M1/1‑97 (MQ=255)                                                 gAACCGCACCTTTGCCGGGTTGTTCATTGGTGCAGCCACCTTCCTCGCGACCTTGCGCCGCGCGCCGGTCTGACAGACCGCATACAGGCCAatcgcgggtttgcccgcgaat                                                                                                                                 >  1:170074‑M1/1‑91 (MQ=255)                                                 gAACCGCACCTTTGCCGGGTTGTTCATTGGTGCAGCCACCTTCCTCGCGACCTTGCGCCGCGCGCCGGTCTGACAGACCGCATACAGGCCAatcgcgggtttgcccgcgaat                                                                                                                                 <  2:170074‑M1/112‑22 (MQ=255)                                                 gAACCGCACCTTTGCCGGGTTGTTCATTGGTGCAGCCACCTTCCTCGCGACCTTGCGCCGCGCGCCGGTCTGACAGACCGCATACAGGCCATTCGCGGGCAAACCCGCGATTGGCCCATCACTATTTCTCCTTGTCCACCAACCCCTTca                                                                                           >  2:635301/1‑150 (MQ=255)                                                 gAACCGCACCTTTGCCGGGTTGTTCATTGGTGCAGCCACCTTCCTCGCGACCTTGCGCCGCGCGCCGGTCTGACAGACCGCATACAGGCCATTCGCGGGCAAACCCGCGATTGGCCCATCACTATTTCTCCTTGTCCACCAACCCCTTca                                                                                           <  1:657055/150‑1 (MQ=255)                                                  aaCCGCACCTTTGCCGGGTTGTTCATTGGTGCAGCCACCTTCCTCGCGACCTTGCGCCGCGCGCCGGTCTGACAGACCGCATACAGGCCATTCGCGGGCAAACCCGCGATTGGCCCATCACTATTTCTCCTTGTCCACCAACCCCTTcag                                                                                          <  1:478850/150‑1 (MQ=255)                                                      gCACCTTTGCCGGGTTGTTCATTGGTGCAGCCACCTTCCTCGCGACCTTGCGCCGCGCGCCGGTCTGACAGACCGCATACAGGCCATTCGCGGGCAAACCCGCGATt                                                                                                                                 >  1:326814‑M2/1‑106 (MQ=255)                                                      gCACCTTTGCCGGGTTGTTCATTGGTGCAGCCACCTTCCTCGCGACCTTGCGCCGCGCGCCGGTCTGACAGACCGCATACAGGCCATTCGCGGGCAAACCCGCGATt                                                                                                                                 <  2:326814‑M2/107‑2 (MQ=255)                                                       cACCTTTGCCGGGTTGTTCATTGGTGCAGCCACCTTCCTCGCGACCTTGCGCCGCGCGCCGGTCTGACAGACCGCATACAGGCCATTCGCGGGCAAACCCGCGATTGGCCCATCACTa                                                                                                                     <  1:158428/118‑1 (MQ=255)                                                       cACCTTTGCCGGGTTGTTCATTGGTGCAGCCACCTTCCTCGCGACCTTGCGCCGCGCGCCGGTCTGACAGACCGCATACAGGCCATTCGCGGGCAAACCCGCGATTGGCCCATCACTa                                                                                                                     >  2:158428/1‑118 (MQ=255)                                                         ccTTTGCCGGGTTGTTCATTGGTGCAGCCACCTTCCTCGCGACCTTGCGCCGCGCGCCGGTCTGACAGACCGCATACAGGCCATTCGCGGGCAAACCCGCGATtggcc                                                                                                                             >  1:461011‑M2/1‑103 (MQ=255)                                                         ccTTTGCCGGGTTGTTCATTGGTGCAGCCACCTTCCTCGCGACCTTGCGCCGCGCGCCGGTCTGACAGACCGCATACAGGCCATTCGCGGGCAAACCCGCGATtggcc                                                                                                                             <  2:461011‑M2/108‑6 (MQ=255)                                                          cTTTGCCGGGTTGTTCATTGGTGCAGCCACCTTCCTCGCGACCTTGCGCCGCGCGCCGGTCTGACAGACCGCATACAGGCCAATCGCGGGTTTGCCCGCGAAtggcctgtatgcggt                                                                                                                   <  2:543964‑M2/117‑16 (MQ=255)                                                          cTTTGCCGGGTTGTTCATTGGTGCAGCCACCTTCCTCGCGACCTTGCGCCGCGCGCCGGTCTGACAGACCGCATACAGGCCAATCGCGGGTTTGCCCGCGAAtggcctgtatgcggt                                                                                                                   >  1:543964‑M2/1‑102 (MQ=255)                                                                         cATTGGTGCAGCCACCTTCCTCGCGACCTTGCGCCGCGCGCCGGTCTCACAGACCGCATACGGGCCATTCGCGGGCAAACCCGCGATTGGCCCATCACTATTTCTCCTTGTCCACCAACCCCTTCAGCAGATCTATCGGCAGCGGGAAGa                                                                   <  1:122049/150‑1 (MQ=255)                                                                                  aGCCACCTTCCTCGCGACCTTGCGCCGCGCGCCGGTCTGACAGACCGCATACAGGCCATTCGCGGGCAAACCCGCGATTGGCCCATCACTATTTCTCCTTGTCCACCAACCCCTTCAGCAGa                                                                                      >  2:491768/1‑122 (MQ=255)                                                                                  aGCCACCTTCCTCGCGACCTTGCGCCGCGCGCCGGTCTGACAGACCGCATACAGGCCATTCGCGGGCAAACCCGCGATTGGCCCATCACTATTTCTCCTTGTCCACCAACCCCTTCAGCAGa                                                                                      <  1:491768/122‑1 (MQ=255)                                                                                        cTTCCTCGCGACCTTGCGCCGCGCGCCGGTCTGACAGACCGCATACAGGCCATTCGCGGGCAAACCCGCGATTGGCCCATCACTATTTCTcc                                                                                                              <  1:668502/92‑1 (MQ=255)                                                                                        cTTCCTCGCGACCTTGCGCCGCGCGCCGGTCTGACAGACCGCATACAGGCCATTCGCGGGCAAACCCGCGATTGGCCCATCACTATTTCTcc                                                                                                              >  2:668502/1‑92 (MQ=255)                                                                                             tCGCGACCTTGCGCCGCGCGCCGGTCTGACAGACCGCATACAGGCCAatcgcgggtttgcccgcgaatggcctgtatgcg                                                                                                                     >  2:369017‑M1/1‑47 (MQ=255)                                                                                             tCGCGACCTTGCGCCGCGCGCCGGTCTGACAGACCGCATACAGGCCAatcgcgggtttgcccgcgaatggcctgtatgcg                                                                                                                     <  1:369017‑M1/80‑34 (MQ=255)                                                                                                    cTTGCGCCGGGCGCCGGTCTGACAGACCGCATACAGGCCATTCGCGGGCAAACCCGCGATTGGCCCATCACTATTTCTCCTTGTCCACCAACCCCTTCAGCAGATCTATCGGCAGCGGGAAGACGATGGTCGAGCTCTTGTCCCCGGCaa                                        <  1:101494/150‑1 (MQ=255)                                                                                                          ccgcGCGCCGGTCTGACAGACCGCATACAGGCCATTCGCGGGCAAACCCGCGATTGGCCCATCACTATTTCTCCTTGTCCACCAACCCCTTCAGCAGATCTATCGGCAGCGGGAAGACGATGGTCGAGCTCTTGTCCCCGGCAATCGTcc                                  <  1:635301/150‑1 (MQ=255)                                                                                                                           aGACCGCATACAGGCCATTCGCGGGCAAACCCGCGATTGGCCCATCACTATTTCTCCTTGTCCACCAACCCCTTCAGCAGATCTATCGGCAGCGGGAAGACGATGGTCGAGCTCTTGTCCCCGGCAATCGTCCCCAGTGTCTGCATATAg                 >  1:249766/1‑150 (MQ=255)                                                                                                                             aCCGCATACAGGCCAttcgcgggcaaacccgcgattggcctgtatgcggtctgtcagaccggcgcgcggcgcaaggtcgcgaggaaggtggctgcaccaatgaacaacccggcaaag                                                >  1:543964‑M1/1‑15 (MQ=255)                                                                                                                             aCCGCATACAGGCCAttcgcgggcaaacccgcgattggcctgtatgcggtctgtcagaccggcgcgcggcgcaaggtcgcgaggaaggtggctgcaccaatgaacaacccggcaaag                                                <  2:543964‑M1/117‑103 (MQ=255)                                                                                                                               cGCATACAGGCCATTCGCGGGCAAACCCGCGATtggcctgtatgcggtctgtcagaccggcgcgcggcgcaaggtcgcga                                                                                   >  2:369017‑M2/1‑33 (MQ=255)                                                                                                                               cGCATACAGGCCATTCGCGGGCAAACCCGCGATtggcctgtatgcggtctgtcagaccggcgcgcggcgcaaggtcgcga                                                                                   <  1:369017‑M2/80‑48 (MQ=255)                                                                                                                                     cAGGCCATTCGCGGGCAAACCCGCGATTGGCCCATCACTATTTCTCCTTGTCCACCAACCCCTTCAGCAGATCTATCGGCAGCGGGAAGACGATGGTCGAGCTCTTGTCCCCGGCAATCGTCCCCAGTGTCTGCATATAgc                >  1:498764/1‑141 (MQ=255)                                                                                                                                     cAGGCCATTCGCGGGCAAACCCGCGATTGGCCCATCACTATTTCTCCTTGTCCACCAACCCCTTCAGCAGATCTATCGGCAGCGGGAAGACGATGGTCGAGCTCTTGTCCCCGGCAATCGTCCCCAGTGTCTGCATATAgc                <  2:498764/141‑1 (MQ=255)                                                                                                                                      aGGCCATTCGCGGGCAAACCCGCGATTGGCCCATCACTATTTCTCCTTGTCCACCAACCCCTTCAGCAGATCTATCGGCAGCGGGAAGACGATGGTCGAGCTCTTGTCCCCGGCAATCGTCCCCAGTGTCTGCATATAGCGCAACTGCAt      >  2:452094/1‑150 (MQ=255)                                                                                                                                       ggCCAatcgcgggtttgcccgcgaatggcctgtatgcggtctgtcagaccggcgcgcggcgcaaggtcgcgaggaaggtggctgcaccaatgaacaacccggcaaagg                                               >  1:461011‑M1/1‑5 (MQ=255)                                                                                                                                       ggCCAatcgcgggtttgcccgcgaatggcctgtatgcggtctgtcagaccggcgcgcggcgcaaggtcgcgaggaaggtggctgcaccaatgaacaacccggcaaagg                                               <  2:461011‑M1/108‑104 (MQ=255)                                                                                                                                          cAatcgcgggtttgcccgcgaatggcctgtatgcggtctgtcagaccggcgcgcggcgcaaggtcgcgaggaaggtggctgcaccaatgaacaacccggcaaaggtgcggttcaaacgcttctgctgtttgggcgtgcgcagcatgcgca  >  1:545247‑M1/1‑2 (MQ=255)                                                                                                                                           aatcgcgggtttgcccgcgaatggcctgtatgcggtctgtcagaccggcgcgcggcgcaaggtcgcgaggaaggtggctgcaccaatgaacaacccggcaaaggtgc                                            >  1:326814‑M1/1‑1 (MQ=255)                                                                                                                                           aatcgcgggtttgcccgcgaatggcctgtatgcggtctgtcagaccggcgcgcggcgcaaggtcgcgaggaaggtggctgcaccaatgaacaacccggcaaaggtgc                                            <  2:326814‑M1/107‑107 (MQ=255)                                                                                                                                           aTTCGCGGGCAAACCCGCGATtggcctgtatgcggtctgtcagaccggcgcgcggcgcaaggtcgcgaggaaggtggctgcaccaatgaacaacccggcaaaggtgcggttcaaacgc                                 >  2:685513‑M2/1‑21 (MQ=255)                                                                                                                                           aTTCGCGGGCAAACCCGCGATtggcctgtatgcggtctgtcagaccggcgcgcggcgcaaggtcgcgaggaaggtggctgcaccaatgaacaacccggcaaaggtgcggttcaaacgc                                 <  1:685513‑M2/118‑98 (MQ=255)                                                                                                                                           aTTCGCGGGCAAACCCGCGATtggcctgtatgcggtctgtcagaccggcgcgcggcgcaaggtcgcgaggaaggtggctgcaccaatgaacaacccggcaaaggtgcggttc                                       >  1:170074‑M2/1‑21 (MQ=255)                                                                                                                                           aTTCGCGGGCAAACCCGCGATtggcctgtatgcggtctgtcagaccggcgcgcggcgcaaggtcgcgaggaaggtggctgcaccaatgaacaacccggcaaaggtgcggttc                                       <  2:170074‑M2/112‑92 (MQ=255)                                                                                                                                           |                                                                                                                                                     TTCGCATGTGTTGCGCATGCTGCGCACGCCCAAACAGCAGAAGCGTTTGAACCGCACCTTTGCCGGGTTGTTCATTGGTGCAGCCACCTTCCTCGCGACCTTGCGCCGCGCGCCGGTCTGACAGACCGCATACAGGCCATTCGCGGGCAAACCCGCGATTGGCCCATCACTATTTCTCCTTGTCCACCAACCCCTTCAGCAGATCTATCGGCAGCGGGAAGACGATGGTCGAGCTCTTGTCCCCGGCAATCGTCCCCAGTGTCTGCATATAGCGCAACTGCATCGCC  >  NC_002947/248932‑249218

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.